Wall clock time and date at job start Fri Apr 10 2020 18:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38210 * 120.08715 * 2 1 4 4 F 1.35103 * 119.95484 * 359.95628 * 3 2 1 5 5 C 1.38547 * 120.09392 * 179.97438 * 3 2 1 6 6 C 1.38348 * 120.26617 * 359.97438 * 5 3 2 7 7 C 1.37941 * 120.17521 * 359.76195 * 6 5 3 8 8 C 1.39532 * 120.08891 * 179.97438 * 2 1 3 9 9 C 1.47849 * 120.13329 * 0.02934 * 8 2 1 10 10 O 1.21559 * 119.99836 * 354.36527 * 9 8 2 11 11 N 1.34771 * 120.00600 * 174.37063 * 9 8 2 12 12 C 1.46502 * 120.00372 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.45836 * 34.97872 * 12 11 9 14 14 C 1.53038 * 109.46007 * 274.99603 * 12 11 9 15 15 C 1.53196 * 109.31034 * 178.61127 * 14 12 11 16 16 N 1.46930 * 108.77222 * 54.64185 * 15 14 12 17 17 C 1.36928 * 120.62929 * 126.36663 * 16 15 14 18 18 H 1.08001 * 120.00396 * 331.65966 * 17 16 15 19 19 C 1.38814 * 119.99976 * 151.38588 * 17 16 15 20 20 N 1.31622 * 119.99929 * 346.32427 * 19 17 16 21 21 Si 1.86798 * 120.00159 * 166.31888 * 19 17 16 22 22 H 1.48502 * 109.47233 * 90.00217 * 21 19 17 23 23 H 1.48501 * 109.47339 * 210.00358 * 21 19 17 24 24 H 1.48498 * 109.47159 * 330.00295 * 21 19 17 25 25 C 1.46930 * 118.73707 * 306.63787 * 16 15 14 26 26 C 1.52765 * 109.00456 * 53.31498 * 25 16 15 27 27 H 1.09001 * 109.55949 * 185.55274 * 26 25 16 28 28 O 1.42900 * 109.36325 * 65.49627 * 26 25 16 29 29 H 1.09002 * 109.46905 * 263.48158 * 1 2 3 30 30 H 1.08993 * 109.47180 * 23.48590 * 1 2 3 31 31 H 1.09003 * 109.47081 * 143.48369 * 1 2 3 32 32 H 1.07999 * 119.86767 * 179.97438 * 5 3 2 33 33 H 1.08008 * 119.91099 * 180.02562 * 6 5 3 34 34 H 1.08000 * 120.04767 * 180.25634 * 7 6 5 35 35 H 0.97010 * 119.99804 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.49130 * 58.66966 * 14 12 11 37 37 H 1.08998 * 109.52882 * 298.58430 * 14 12 11 38 38 H 1.09001 * 109.58793 * 294.85635 * 15 14 12 39 39 H 1.08996 * 109.58733 * 174.42568 * 15 14 12 40 40 H 0.96995 * 119.99607 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.58069 * 173.14520 * 25 16 15 42 42 H 1.08998 * 109.58922 * 293.56998 * 25 16 15 43 43 H 0.96697 * 113.99470 * 60.15545 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.1959 0.0000 4 9 1.5252 2.3664 -0.0009 5 6 3.5853 1.1960 0.0005 6 6 4.2828 0.0012 0.0016 7 6 3.6024 -1.1987 0.0071 8 6 2.2065 -1.2073 0.0005 9 6 1.4722 -2.4906 0.0005 10 8 0.2610 -2.4978 0.1033 11 7 2.1457 -3.6524 -0.1135 12 6 1.4181 -4.9240 -0.1130 13 1 0.4603 -4.7944 -0.6168 14 6 1.1786 -5.3738 1.3300 15 6 0.3875 -6.6857 1.3271 16 7 1.1026 -7.6672 0.4999 17 6 1.4274 -8.8987 1.0026 18 1 1.5933 -9.0227 2.0626 19 6 1.5378 -9.9891 0.1507 20 7 1.0761 -9.9124 -1.0795 21 14 2.3416 -11.5651 0.7501 22 1 1.3100 -12.4511 1.3469 23 1 2.9871 -12.2578 -0.3940 24 1 3.3668 -11.2396 1.7739 25 6 1.4679 -7.2998 -0.8751 26 6 2.2419 -5.9830 -0.8492 27 1 2.4320 -5.6513 -1.8699 28 8 3.4846 -6.1771 -0.1708 29 1 -0.3633 -0.1167 1.0210 30 1 -0.3633 0.9425 -0.4095 31 1 -0.3633 -0.8259 -0.6115 32 1 4.1230 2.1326 0.0001 33 1 5.3628 0.0081 0.0024 34 1 4.1490 -2.1302 0.0121 35 1 3.1122 -3.6467 -0.1959 36 1 0.6118 -4.6085 1.8603 37 1 2.1362 -5.5275 1.8274 38 1 -0.6055 -6.5127 0.9123 39 1 0.2998 -7.0618 2.3463 40 1 1.1529 -10.6745 -1.6747 41 1 2.0927 -8.0809 -1.3082 42 1 0.5647 -7.1779 -1.4730 43 1 4.0590 -6.8366 -0.5834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090278728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:37 Heat of formation + Delta-G solvation = -79.466026 kcal Electronic energy + Delta-G solvation = -27513.393351 eV Core-core repulsion = 23473.685458 eV Total energy + Delta-G solvation = -4039.707893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.15353 -40.48788 -38.80467 -37.68325 -34.83396 -34.58726 -32.84561 -32.34320 -31.05622 -29.28872 -29.05603 -27.28090 -25.28739 -23.97340 -22.43624 -22.14575 -21.57654 -20.40524 -19.50437 -18.20058 -17.26949 -16.88676 -16.24690 -16.06833 -15.98498 -15.84154 -15.45354 -15.04922 -14.78941 -14.22782 -13.90462 -13.85317 -13.59665 -13.44843 -13.37023 -13.10260 -12.75740 -12.50113 -12.21684 -12.17492 -12.04695 -11.97551 -11.51795 -11.26733 -11.14547 -10.81464 -10.62327 -10.50950 -10.18071 -10.06831 -9.78177 -9.56966 -9.30925 -9.21123 -8.93301 -8.71012 -8.53280 -6.69229 -5.83695 -3.26553 0.47657 0.85393 2.69374 3.17236 3.34158 3.41396 3.43753 3.52014 3.97926 4.41533 4.43298 4.45187 4.62880 4.67665 4.81003 4.96138 5.25680 5.33771 5.38017 5.43035 5.46718 5.54141 5.62666 5.69838 5.77265 5.91349 5.93237 5.97021 6.03427 6.14093 6.20032 6.32246 6.43446 6.51916 6.55209 6.76597 6.81426 6.96131 7.14893 7.43153 7.65073 7.74913 8.19665 8.29918 8.41016 9.15977 9.78220 10.35080 11.24996 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031672 B = 0.002760 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.857929 B =10141.367600 C =10587.237161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.057 4.057 3 C 0.084 3.916 4 F -0.136 7.136 5 C -0.128 4.128 6 C -0.106 4.106 7 C -0.091 4.091 8 C -0.108 4.108 9 C 0.552 3.448 10 O -0.530 6.530 11 N -0.710 5.710 12 C 0.163 3.837 13 H 0.092 0.908 14 C -0.136 4.136 15 C 0.148 3.852 16 N -0.583 5.583 17 C -0.242 4.242 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.145 3.855 26 C 0.073 3.927 27 H 0.044 0.956 28 O -0.561 6.561 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.401 0.599 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.020 0.980 39 H 0.057 0.943 40 H 0.254 0.746 41 H 0.099 0.901 42 H 0.027 0.973 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.875 19.612 -0.561 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.059 4.059 3 C 0.064 3.936 4 F -0.114 7.114 5 C -0.147 4.147 6 C -0.125 4.125 7 C -0.110 4.110 8 C -0.111 4.111 9 C 0.339 3.661 10 O -0.409 6.409 11 N -0.361 5.361 12 C 0.059 3.941 13 H 0.110 0.890 14 C -0.177 4.177 15 C 0.021 3.979 16 N -0.305 5.305 17 C -0.372 4.372 18 H 0.083 0.917 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.018 3.982 26 C 0.011 3.989 27 H 0.062 0.938 28 O -0.366 6.366 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.237 0.763 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.117 0.883 42 H 0.045 0.955 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.712 19.921 -0.211 20.725 hybrid contribution 1.111 -0.998 -0.197 1.506 sum 6.822 18.923 -0.407 20.120 Atomic orbital electron populations 1.21050 0.88881 1.03613 1.04274 1.20074 0.97980 0.90455 0.97398 1.17416 0.89996 0.80962 1.05190 1.91493 1.80408 1.45497 1.94035 1.21317 0.92125 1.00117 1.01186 1.20934 1.00505 0.91094 0.99919 1.21440 0.92934 0.99087 0.97567 1.19773 0.93519 0.93162 1.04669 1.18125 0.87215 0.83568 0.77203 1.90734 1.13447 1.87054 1.49649 1.46158 1.11106 1.05692 1.73095 1.21065 0.94945 0.80107 0.97976 0.88975 1.22308 1.01645 0.98597 0.95106 1.20899 0.92947 0.88312 0.95723 1.43857 1.63911 1.12339 1.10420 1.19183 1.40383 0.84428 0.93164 0.91706 1.25062 1.00474 0.97471 0.96883 1.69975 1.48220 1.30578 1.06706 0.86262 0.79261 0.83383 0.77662 1.21427 1.21653 1.20491 1.21382 0.97311 0.92230 0.87302 1.22787 0.85717 0.97639 0.92712 0.93838 1.86335 1.29430 1.63628 1.57254 0.90202 0.92183 0.87814 0.84397 0.84357 0.84665 0.76343 0.92823 0.91193 0.96191 0.92435 0.93627 0.88309 0.95520 0.77750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.62 36.00 0.31 -1.20 16 2 C -0.06 -0.70 5.92 -104.15 -0.62 -1.31 16 3 C 0.08 0.91 7.24 -39.48 -0.29 0.62 16 4 F -0.14 -1.53 16.37 2.25 0.04 -1.49 16 5 C -0.13 -1.09 10.02 -39.43 -0.40 -1.49 16 6 C -0.11 -0.83 10.03 -39.65 -0.40 -1.22 16 7 C -0.09 -0.86 9.52 -39.18 -0.37 -1.23 16 8 C -0.11 -1.32 5.87 -104.98 -0.62 -1.93 16 9 C 0.55 8.13 7.67 -12.33 -0.09 8.04 16 10 O -0.53 -9.24 12.99 5.31 0.07 -9.17 16 11 N -0.71 -10.11 5.00 -54.71 -0.27 -10.39 16 12 C 0.16 2.78 2.20 -67.89 -0.15 2.63 16 13 H 0.09 1.71 7.57 -51.93 -0.39 1.32 16 14 C -0.14 -2.52 5.51 -26.61 -0.15 -2.66 16 15 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 16 N -0.58 -14.08 2.94 -172.57 -0.51 -14.59 16 17 C -0.24 -6.43 9.59 -15.06 -0.14 -6.58 16 18 H 0.07 1.72 7.87 -52.49 -0.41 1.31 16 19 C 0.00 -0.03 5.00 -17.43 -0.09 -0.12 16 20 N -0.91 -25.31 11.04 55.49 0.61 -24.70 16 21 Si 0.90 21.08 29.58 -169.99 -5.03 16.06 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 C 0.14 3.21 4.89 -3.93 -0.02 3.19 16 26 C 0.07 1.27 3.37 -26.83 -0.09 1.18 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 O -0.56 -9.43 12.08 -35.23 -0.43 -9.86 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.65 7.46 -51.93 -0.39 0.27 16 31 H 0.10 1.45 5.83 -51.93 -0.30 1.14 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 34 H 0.14 1.05 6.45 -52.49 -0.34 0.71 16 35 H 0.40 4.90 6.32 -40.82 -0.26 4.64 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.36 7.61 -51.93 -0.40 0.96 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 40 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.10 2.41 6.00 -51.93 -0.31 2.10 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.38 5.47 9.08 45.56 0.41 5.88 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -30.43 350.56 -8.26 -38.69 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.89 Total: 9.14 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -3.13 Total: 1.03 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.17 Total: -49.68 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.36 Total: -19.03 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.43 -8.26 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090278728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.778 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds