Wall clock time and date at job start Fri Apr 10 2020 18:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38210 * 120.08887 * 2 1 4 4 F 1.35102 * 119.95210 * 359.97438 * 3 2 1 5 5 C 1.38552 * 120.09519 * 180.02562 * 3 2 1 6 6 C 1.38345 * 120.26633 * 0.02562 * 5 3 2 7 7 C 1.37938 * 120.17241 * 359.97438 * 6 5 3 8 8 C 1.39535 * 120.08734 * 180.26041 * 2 1 3 9 9 C 1.47847 * 120.13388 * 0.02562 * 8 2 1 10 10 O 1.21558 * 119.99856 * 1.30689 * 9 8 2 11 11 N 1.34774 * 120.00260 * 181.31020 * 9 8 2 12 12 C 1.46497 * 120.00123 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46113 * 325.00101 * 12 11 9 14 14 C 1.53040 * 109.45799 * 84.97359 * 12 11 9 15 15 C 1.53195 * 109.30968 * 181.39743 * 14 12 11 16 16 N 1.46925 * 108.76967 * 305.34283 * 15 14 12 17 17 C 1.36936 * 120.63442 * 233.64075 * 16 15 14 18 18 H 1.08003 * 119.99881 * 146.83957 * 17 16 15 19 19 C 1.38809 * 119.99781 * 326.83718 * 17 16 15 20 20 N 1.31618 * 119.99832 * 162.77327 * 19 17 16 21 21 Si 1.86800 * 120.00222 * 342.77841 * 19 17 16 22 22 H 1.48503 * 109.47137 * 89.57777 * 21 19 17 23 23 H 1.48503 * 109.46988 * 209.57910 * 21 19 17 24 24 H 1.48500 * 109.46938 * 329.57828 * 21 19 17 25 25 C 1.46934 * 118.73310 * 53.61688 * 16 15 14 26 26 C 1.53046 * 109.46116 * 205.02779 * 12 11 9 27 27 H 1.09003 * 109.49667 * 58.62866 * 26 12 11 28 28 O 1.42902 * 109.49656 * 298.56723 * 26 12 11 29 29 H 1.09000 * 109.47271 * 97.24972 * 1 2 3 30 30 H 1.08999 * 109.46662 * 217.25071 * 1 2 3 31 31 H 1.08999 * 109.46653 * 337.24960 * 1 2 3 32 32 H 1.08003 * 119.86914 * 180.02562 * 5 3 2 33 33 H 1.07999 * 119.91257 * 179.97438 * 6 5 3 34 34 H 1.08007 * 120.04752 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00008 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.49995 * 301.33198 * 14 12 11 37 37 H 1.08995 * 109.49905 * 61.43759 * 14 12 11 38 38 H 1.09000 * 109.58601 * 185.56238 * 15 14 12 39 39 H 1.09006 * 109.60076 * 65.13774 * 15 14 12 40 40 H 0.96998 * 120.00363 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.58119 * 186.60813 * 25 16 15 42 42 H 1.08997 * 109.69975 * 66.25448 * 25 16 15 43 43 H 0.96697 * 113.99962 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1959 0.0000 4 9 1.5253 2.3664 -0.0005 5 6 3.5854 1.1960 -0.0005 6 6 4.2829 0.0012 -0.0016 7 6 3.6025 -1.1987 -0.0016 8 6 2.2065 -1.2073 -0.0055 9 6 1.4723 -2.4906 -0.0119 10 8 0.2569 -2.4952 -0.0364 11 7 2.1503 -3.6551 0.0095 12 6 1.4227 -4.9266 0.0037 13 1 0.5001 -4.8197 0.5743 14 6 1.0883 -5.3161 -1.4380 15 6 0.2973 -6.6280 -1.4379 16 7 1.0640 -7.6422 -0.7015 17 6 1.3534 -8.8512 -1.2758 18 1 2.2796 -9.3537 -1.0389 19 6 0.4562 -9.4309 -2.1622 20 7 0.8543 -10.3949 -2.9651 21 14 -1.3160 -8.8429 -2.2159 22 1 -1.4391 -7.7307 -3.1922 23 1 -2.1973 -9.9644 -2.6293 24 1 -1.7203 -8.3662 -0.8689 25 6 1.5148 -7.3343 0.6627 26 6 2.2919 -6.0144 0.6390 27 1 2.5498 -5.7251 1.6578 28 8 3.4869 -6.1781 -0.1273 29 1 -0.3634 -0.1297 -1.0194 30 1 -0.3632 -0.8180 0.6221 31 1 -0.3632 0.9477 0.3974 32 1 4.1232 2.1326 -0.0001 33 1 5.3628 0.0080 -0.0024 34 1 4.1490 -2.1303 -0.0029 35 1 3.1201 -3.6514 0.0287 36 1 0.4889 -4.5302 -1.8975 37 1 2.0112 -5.4476 -2.0027 38 1 0.1420 -6.9612 -2.4640 39 1 -0.6662 -6.4740 -0.9519 40 1 0.2276 -10.7998 -3.5849 41 1 2.1629 -8.1335 1.0224 42 1 0.6520 -7.2388 1.3219 43 1 4.0866 -6.8531 0.2187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090278729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:40 Heat of formation + Delta-G solvation = -74.406690 kcal Electronic energy + Delta-G solvation = -27602.728983 eV Core-core repulsion = 23563.240479 eV Total energy + Delta-G solvation = -4039.488504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.19386 -40.58632 -38.98355 -37.85867 -35.17589 -34.71620 -32.88893 -32.24392 -31.26997 -30.00003 -29.28243 -27.34727 -25.31299 -23.94848 -22.80005 -22.23628 -21.70777 -20.52223 -19.84733 -18.28325 -17.20526 -16.97565 -16.37523 -16.15867 -16.09972 -16.02532 -15.84512 -14.97994 -14.93644 -14.34779 -14.29646 -14.09653 -13.75282 -13.49783 -13.47416 -13.17055 -12.88351 -12.58918 -12.38756 -12.23653 -12.12760 -12.02096 -11.95084 -11.56821 -11.45523 -11.10853 -10.85664 -10.27635 -10.17511 -10.09796 -9.73325 -9.60780 -9.50684 -9.36060 -8.98178 -8.81776 -8.58703 -6.91640 -5.97335 -3.39484 0.41692 0.80614 2.62091 3.05431 3.34035 3.45686 3.48384 3.51703 3.92683 4.34770 4.38051 4.50671 4.52550 4.57318 4.63871 4.89177 4.93558 5.07411 5.22211 5.30005 5.38458 5.40568 5.52799 5.57352 5.65459 5.70434 5.72490 5.87575 5.92323 5.93033 6.02725 6.20074 6.23892 6.28002 6.39655 6.45935 6.48958 6.63816 6.70282 6.94161 7.52991 7.92112 8.02189 8.19401 8.31418 8.90274 9.68413 10.07020 11.18483 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.003098 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.387137 B = 9034.501072 C = 9723.991336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.056 4.056 3 C 0.084 3.916 4 F -0.135 7.135 5 C -0.127 4.127 6 C -0.106 4.106 7 C -0.091 4.091 8 C -0.109 4.109 9 C 0.554 3.446 10 O -0.529 6.529 11 N -0.711 5.711 12 C 0.161 3.839 13 H 0.094 0.906 14 C -0.138 4.138 15 C 0.130 3.870 16 N -0.596 5.596 17 C -0.260 4.260 18 H 0.082 0.918 19 C 0.028 3.972 20 N -0.909 5.909 21 Si 0.885 3.115 22 H -0.286 1.286 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.120 3.880 26 C 0.081 3.919 27 H 0.051 0.949 28 O -0.554 6.554 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.402 0.598 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.071 0.929 42 H 0.032 0.968 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 21.156 8.914 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.058 4.058 3 C 0.065 3.935 4 F -0.114 7.114 5 C -0.146 4.146 6 C -0.124 4.124 7 C -0.110 4.110 8 C -0.112 4.112 9 C 0.341 3.659 10 O -0.407 6.407 11 N -0.361 5.361 12 C 0.058 3.942 13 H 0.112 0.888 14 C -0.178 4.178 15 C 0.004 3.996 16 N -0.319 5.319 17 C -0.388 4.388 18 H 0.100 0.900 19 C -0.172 4.172 20 N -0.551 5.551 21 Si 0.715 3.285 22 H -0.213 1.213 23 H -0.231 1.231 24 H -0.196 1.196 25 C -0.007 4.007 26 C 0.020 3.980 27 H 0.068 0.932 28 O -0.360 6.360 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.238 0.762 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.139 21.480 8.412 23.872 hybrid contribution -0.270 0.093 0.131 0.314 sum 5.869 21.574 8.543 23.934 Atomic orbital electron populations 1.21086 0.88880 1.03705 1.04379 1.20081 0.97987 0.90457 0.97296 1.17420 0.90002 0.80975 1.05139 1.91495 1.80398 1.45479 1.94020 1.21331 0.92123 1.00156 1.01027 1.20933 1.00533 0.91080 0.99890 1.21427 0.92892 0.99079 0.97583 1.19728 0.93505 0.93057 1.04938 1.18128 0.87263 0.83575 0.76954 1.90731 1.13211 1.87068 1.49736 1.46082 1.10687 1.05403 1.73965 1.21029 0.94491 0.80223 0.98483 0.88809 1.22320 1.01819 0.98405 0.95233 1.21351 0.92933 0.87915 0.97449 1.44171 1.64078 1.13588 1.10110 1.18815 1.01931 0.94872 1.23184 0.90035 1.25396 0.97842 0.96000 0.97928 1.69801 1.34968 1.27827 1.22544 0.86904 0.86590 0.76724 0.78295 1.21336 1.23057 1.19558 1.21591 0.96932 0.94143 0.88020 1.22587 0.86392 0.96478 0.92547 0.93166 1.86435 1.31407 1.61764 1.56364 0.90238 0.87604 0.92142 0.84347 0.84311 0.84689 0.76219 0.92490 0.90529 0.90645 0.95673 0.92698 0.91019 0.95010 0.77661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.66 36.01 0.31 -1.18 16 2 C -0.06 -0.66 5.92 -104.15 -0.62 -1.28 16 3 C 0.08 0.88 7.24 -39.48 -0.29 0.60 16 4 F -0.14 -1.49 16.36 2.25 0.04 -1.45 16 5 C -0.13 -1.03 10.02 -39.43 -0.40 -1.43 16 6 C -0.11 -0.77 10.03 -39.65 -0.40 -1.17 16 7 C -0.09 -0.80 9.54 -39.18 -0.37 -1.17 16 8 C -0.11 -1.27 5.87 -104.98 -0.62 -1.88 16 9 C 0.55 7.76 7.71 -12.33 -0.10 7.66 16 10 O -0.53 -8.89 12.93 5.31 0.07 -8.82 16 11 N -0.71 -9.36 5.00 -54.71 -0.27 -9.64 16 12 C 0.16 2.55 2.20 -67.89 -0.15 2.40 16 13 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 14 C -0.14 -2.57 5.51 -26.61 -0.15 -2.72 16 15 C 0.13 2.85 4.21 -3.71 -0.02 2.84 16 16 N -0.60 -13.63 2.63 -172.31 -0.45 -14.09 16 17 C -0.26 -7.06 10.00 -15.06 -0.15 -7.21 16 18 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 19 C 0.03 0.80 5.25 -17.43 -0.09 0.70 16 20 N -0.91 -27.66 13.97 55.49 0.78 -26.88 16 21 Si 0.88 22.50 24.38 -169.99 -4.14 18.35 16 22 H -0.29 -7.10 6.60 56.52 0.37 -6.73 16 23 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 24 H -0.27 -6.76 6.80 56.52 0.38 -6.38 16 25 C 0.12 2.17 6.16 -3.71 -0.02 2.14 16 26 C 0.08 1.19 3.38 -26.61 -0.09 1.10 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 O -0.55 -8.15 12.08 -35.23 -0.43 -8.57 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.11 1.43 5.77 -51.93 -0.30 1.13 16 31 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 32 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.14 0.93 6.40 -52.48 -0.34 0.60 16 35 H 0.40 4.43 6.29 -40.82 -0.26 4.18 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.52 7.61 -51.93 -0.40 1.13 16 38 H 0.08 1.83 4.96 -51.93 -0.26 1.58 16 39 H 0.03 0.56 7.06 -51.93 -0.37 0.19 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.07 1.24 7.93 -51.93 -0.41 0.82 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.38 4.37 9.08 45.56 0.41 4.79 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -32.70 344.72 -7.19 -39.89 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.83 Total: 6.62 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -3.13 Total: -0.60 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.05 Total: -50.61 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.36 Total: -17.40 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.70 -7.19 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090278729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.518 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds