Wall clock time and date at job start Fri Apr 10 2020 18:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38208 * 120.08947 * 2 1 4 4 F 1.35106 * 119.95223 * 0.02562 * 3 2 1 5 5 C 1.38544 * 120.09763 * 180.02562 * 3 2 1 6 6 C 1.38347 * 120.26642 * 359.97438 * 5 3 2 7 7 C 1.37941 * 120.17061 * 359.74684 * 6 5 3 8 8 C 1.39534 * 120.08963 * 180.02562 * 2 1 3 9 9 C 1.47857 * 120.12741 * 359.95103 * 8 2 1 10 10 O 1.21549 * 120.00189 * 353.14279 * 9 8 2 11 11 N 1.34775 * 119.99859 * 173.14927 * 9 8 2 12 12 C 1.46496 * 120.00183 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46596 * 35.02062 * 12 11 9 14 14 C 1.53039 * 109.45797 * 275.06248 * 12 11 9 15 15 C 1.53627 * 109.24444 * 178.49195 * 14 12 11 16 16 N 1.46922 * 108.54242 * 54.85120 * 15 14 12 17 17 C 1.36942 * 120.62721 * 126.37413 * 16 15 14 18 18 H 1.08000 * 120.00050 * 213.37783 * 17 16 15 19 19 C 1.38808 * 120.00174 * 33.37351 * 17 16 15 20 20 N 1.31622 * 120.00205 * 197.46097 * 19 17 16 21 21 Si 1.86810 * 120.00004 * 17.45518 * 19 17 16 22 22 H 1.48498 * 109.47046 * 272.76596 * 21 19 17 23 23 H 1.48497 * 109.46557 * 32.76264 * 21 19 17 24 24 H 1.48499 * 109.46926 * 152.76139 * 21 19 17 25 25 C 1.46918 * 118.74333 * 306.09945 * 16 15 14 26 26 C 1.53040 * 109.46164 * 154.99798 * 12 11 9 27 27 H 1.08994 * 109.50399 * 61.43410 * 26 12 11 28 28 O 1.42907 * 109.49501 * 301.33149 * 26 12 11 29 29 H 1.09003 * 109.46987 * 262.10144 * 1 2 3 30 30 H 1.09001 * 109.47445 * 22.10148 * 1 2 3 31 31 H 1.09006 * 109.47288 * 142.10394 * 1 2 3 32 32 H 1.07996 * 119.87239 * 180.02562 * 5 3 2 33 33 H 1.07999 * 119.91499 * 180.02562 * 6 5 3 34 34 H 1.08003 * 120.05045 * 180.24859 * 7 6 5 35 35 H 0.97008 * 119.99877 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.49985 * 298.56335 * 14 12 11 37 37 H 1.08998 * 109.50016 * 58.63184 * 14 12 11 38 38 H 1.09000 * 109.73502 * 295.12108 * 15 14 12 39 39 H 1.08996 * 109.66550 * 174.55214 * 15 14 12 40 40 H 0.97002 * 120.00019 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.58745 * 173.64831 * 25 16 15 42 42 H 1.08997 * 109.58705 * 293.93057 * 25 16 15 43 43 H 0.96704 * 113.99518 * 180.16086 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1958 0.0000 4 9 1.5252 2.3664 0.0005 5 6 3.5853 1.1960 -0.0005 6 6 4.2828 0.0012 -0.0005 7 6 3.6024 -1.1987 0.0053 8 6 2.2065 -1.2073 -0.0005 9 6 1.4721 -2.4906 0.0000 10 8 0.2633 -2.4990 0.1266 11 7 2.1431 -3.6510 -0.1398 12 6 1.4154 -4.9225 -0.1398 13 1 0.4486 -4.7876 -0.6246 14 6 1.2018 -5.3877 1.3024 15 6 0.4057 -6.7016 1.2980 16 7 1.1105 -7.6720 0.4494 17 6 1.4432 -8.9094 0.9328 18 1 2.3489 -9.3938 0.5992 19 6 0.6163 -9.5408 1.8517 20 7 1.0761 -10.5425 2.5712 21 14 -1.1489 -8.9689 2.0673 22 1 -1.1950 -7.8709 3.0660 23 1 -1.6724 -8.4780 0.7673 24 1 -1.9825 -10.1034 2.5400 25 6 1.4461 -7.2921 -0.9296 26 6 2.2257 -5.9737 -0.9019 27 1 3.1826 -6.1273 -0.4033 28 8 2.4509 -5.5245 -2.2397 29 1 -0.3633 -0.1412 1.0179 30 1 -0.3634 0.9521 -0.3867 31 1 -0.3634 -0.8110 -0.6313 32 1 4.1231 2.1326 -0.0001 33 1 5.3628 0.0080 -0.0005 34 1 4.1489 -2.1303 0.0093 35 1 3.1078 -3.6443 -0.2411 36 1 2.1684 -5.5468 1.7803 37 1 0.6454 -4.6279 1.8511 38 1 -0.5933 -6.5253 0.8993 39 1 0.3327 -7.0896 2.3139 40 1 0.4984 -10.9836 3.2136 41 1 2.0597 -8.0700 -1.3838 42 1 0.5303 -7.1655 -1.5069 43 1 2.9576 -6.1441 -2.7825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090278730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:42 Heat of formation + Delta-G solvation = -77.940038 kcal Electronic energy + Delta-G solvation = -27491.245355 eV Core-core repulsion = 23451.603634 eV Total energy + Delta-G solvation = -4039.641721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.18342 -40.56264 -38.96434 -37.81639 -35.66607 -34.72576 -32.89011 -32.32387 -31.29799 -29.99172 -29.14326 -27.34024 -25.34927 -23.95870 -22.78323 -22.26485 -21.68924 -20.56307 -19.93181 -18.29430 -17.22125 -17.02620 -16.63144 -16.26532 -16.11519 -16.03226 -15.92035 -15.03090 -14.89359 -14.55339 -14.21857 -13.97885 -13.63212 -13.50144 -13.42813 -13.13510 -12.85339 -12.61349 -12.51017 -12.27863 -12.22046 -12.05530 -12.01057 -11.59770 -11.55599 -11.18390 -11.03237 -10.28075 -10.21042 -10.02999 -9.92434 -9.64486 -9.58281 -9.35064 -8.97785 -8.83106 -8.67499 -7.03127 -6.04840 -3.49361 0.43871 0.81707 2.64935 3.06247 3.28911 3.44597 3.47687 3.48634 3.93392 4.22498 4.38394 4.39403 4.45889 4.57537 4.64947 4.88635 4.91491 5.08908 5.28955 5.30768 5.34882 5.41384 5.51882 5.57891 5.66782 5.70917 5.73342 5.75869 5.88306 5.93461 5.95772 6.14171 6.24785 6.26122 6.36721 6.49208 6.49663 6.56598 6.63501 6.75480 7.52095 7.74380 7.91658 8.21196 8.24219 8.82179 9.60260 9.97901 11.10553 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.003063 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.466932 B = 9140.446669 C = 9666.636116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.057 4.057 3 C 0.085 3.915 4 F -0.135 7.135 5 C -0.128 4.128 6 C -0.106 4.106 7 C -0.091 4.091 8 C -0.107 4.107 9 C 0.556 3.444 10 O -0.528 6.528 11 N -0.708 5.708 12 C 0.162 3.838 13 H 0.091 0.909 14 C -0.140 4.140 15 C 0.127 3.873 16 N -0.602 5.602 17 C -0.269 4.269 18 H 0.084 0.916 19 C 0.032 3.968 20 N -0.906 5.906 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.270 1.270 24 H -0.301 1.301 25 C 0.122 3.878 26 C 0.080 3.920 27 H 0.061 0.939 28 O -0.570 6.570 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.397 0.603 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.080 0.920 40 H 0.265 0.735 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 21.099 -6.647 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.059 4.059 3 C 0.065 3.935 4 F -0.114 7.114 5 C -0.147 4.147 6 C -0.124 4.124 7 C -0.110 4.110 8 C -0.110 4.110 9 C 0.343 3.657 10 O -0.407 6.407 11 N -0.358 5.358 12 C 0.058 3.942 13 H 0.109 0.891 14 C -0.181 4.181 15 C 0.001 3.999 16 N -0.327 5.327 17 C -0.398 4.398 18 H 0.102 0.898 19 C -0.169 4.169 20 N -0.548 5.548 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.195 1.195 24 H -0.229 1.229 25 C -0.005 4.005 26 C 0.019 3.981 27 H 0.079 0.921 28 O -0.374 6.374 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.232 0.768 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.889 21.465 -6.229 23.114 hybrid contribution -0.157 -0.029 0.039 0.165 sum 5.732 21.436 -6.190 23.037 Atomic orbital electron populations 1.21012 0.88872 1.03372 1.04344 1.20069 0.97975 0.90473 0.97386 1.17410 0.90000 0.80956 1.05103 1.91496 1.80401 1.45478 1.94021 1.21319 0.92116 1.00144 1.01120 1.20928 1.00504 0.91090 0.99896 1.21397 0.92873 0.99012 0.97722 1.19737 0.93511 0.93066 1.04701 1.18069 0.87136 0.83461 0.77058 1.90749 1.13583 1.86994 1.49326 1.45965 1.10923 1.05756 1.73127 1.20995 0.96200 0.80678 0.96287 0.89094 1.22504 1.02035 0.98913 0.94628 1.21495 0.93655 0.88189 0.96562 1.44308 1.68365 1.13051 1.06993 1.18841 1.04739 0.92544 1.23627 0.89831 1.25417 0.97840 0.95673 0.97937 1.69799 1.36042 1.24750 1.24171 0.86936 0.86511 0.76806 0.78379 1.21072 1.19540 1.22867 1.21581 0.97562 0.93470 0.87851 1.22727 0.98426 0.94824 0.82149 0.92087 1.86480 1.78248 1.48815 1.23891 0.90105 0.92134 0.88132 0.84355 0.84334 0.84806 0.76771 0.91263 0.91414 0.95260 0.90224 0.92540 0.91132 0.94828 0.77661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 8.55 36.00 0.31 -1.16 16 2 C -0.06 -0.69 5.92 -104.15 -0.62 -1.30 16 3 C 0.08 0.90 7.24 -39.48 -0.29 0.62 16 4 F -0.14 -1.50 16.35 2.25 0.04 -1.47 16 5 C -0.13 -1.05 10.02 -39.43 -0.40 -1.45 16 6 C -0.11 -0.78 10.03 -39.65 -0.40 -1.18 16 7 C -0.09 -0.81 9.52 -39.19 -0.37 -1.18 16 8 C -0.11 -1.27 5.87 -104.97 -0.62 -1.89 16 9 C 0.56 8.00 7.66 -12.32 -0.09 7.91 16 10 O -0.53 -9.16 13.05 5.32 0.07 -9.09 16 11 N -0.71 -9.48 4.87 -54.71 -0.27 -9.74 16 12 C 0.16 2.61 2.11 -67.89 -0.14 2.46 16 13 H 0.09 1.67 7.58 -51.93 -0.39 1.27 16 14 C -0.14 -2.47 5.67 -26.39 -0.15 -2.62 16 15 C 0.13 2.71 4.24 -3.49 -0.01 2.69 16 16 N -0.60 -13.61 2.68 -172.06 -0.46 -14.07 16 17 C -0.27 -7.21 9.99 -15.06 -0.15 -7.36 16 18 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 19 C 0.03 0.89 5.24 -17.43 -0.09 0.79 16 20 N -0.91 -27.03 13.97 55.49 0.78 -26.25 16 21 Si 0.88 22.06 24.40 -169.99 -4.15 17.92 16 22 H -0.28 -6.82 6.50 56.52 0.37 -6.45 16 23 H -0.27 -6.72 6.95 56.52 0.39 -6.33 16 24 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 25 C 0.12 2.26 6.14 -3.71 -0.02 2.23 16 26 C 0.08 1.21 3.14 -26.61 -0.08 1.13 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -7.54 13.16 -35.23 -0.46 -8.01 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.65 7.42 -51.93 -0.39 0.27 16 31 H 0.10 1.40 5.98 -51.93 -0.31 1.09 16 32 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.91 6.47 -52.48 -0.34 0.57 16 35 H 0.40 4.27 6.69 -40.82 -0.27 3.99 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.03 0.64 7.15 -51.93 -0.37 0.27 16 39 H 0.08 1.85 4.95 -51.93 -0.26 1.59 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.38 3.45 9.08 45.56 0.41 3.87 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -32.29 346.83 -7.25 -39.54 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.89 Total: 6.25 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -3.13 Total: -0.31 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.05 Total: -50.07 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.39 Total: -17.09 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.15 Total: 17.92 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.29 -7.25 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090278730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.403 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds