Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38208 * 120.08947 * 2 1 4 4 F 1.35106 * 119.95223 * 0.02562 * 3 2 1 5 5 C 1.38544 * 120.09763 * 180.02562 * 3 2 1 6 6 C 1.38347 * 120.26642 * 359.97438 * 5 3 2 7 7 C 1.37941 * 120.17061 * 359.74684 * 6 5 3 8 8 C 1.39534 * 120.08963 * 180.02562 * 2 1 3 9 9 C 1.47857 * 120.12741 * 359.95103 * 8 2 1 10 10 O 1.21549 * 120.00189 * 353.14279 * 9 8 2 11 11 N 1.34775 * 119.99859 * 173.14927 * 9 8 2 12 12 C 1.46496 * 120.00183 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46596 * 35.02062 * 12 11 9 14 14 C 1.53039 * 109.45797 * 275.06248 * 12 11 9 15 15 C 1.53627 * 109.24444 * 178.49195 * 14 12 11 16 16 N 1.46922 * 108.54242 * 54.85120 * 15 14 12 17 17 C 1.36942 * 120.62721 * 126.37413 * 16 15 14 18 18 H 1.08000 * 120.00050 * 213.37783 * 17 16 15 19 19 C 1.38808 * 120.00174 * 33.37351 * 17 16 15 20 20 N 1.31622 * 120.00205 * 197.46097 * 19 17 16 21 21 Si 1.86810 * 120.00004 * 17.45518 * 19 17 16 22 22 H 1.48498 * 109.47046 * 272.76596 * 21 19 17 23 23 H 1.48497 * 109.46557 * 32.76264 * 21 19 17 24 24 H 1.48499 * 109.46926 * 152.76139 * 21 19 17 25 25 C 1.46918 * 118.74333 * 306.09945 * 16 15 14 26 26 C 1.53040 * 109.46164 * 154.99798 * 12 11 9 27 27 H 1.08994 * 109.50399 * 61.43410 * 26 12 11 28 28 O 1.42907 * 109.49501 * 301.33149 * 26 12 11 29 29 H 1.09003 * 109.46987 * 262.10144 * 1 2 3 30 30 H 1.09001 * 109.47445 * 22.10148 * 1 2 3 31 31 H 1.09006 * 109.47288 * 142.10394 * 1 2 3 32 32 H 1.07996 * 119.87239 * 180.02562 * 5 3 2 33 33 H 1.07999 * 119.91499 * 180.02562 * 6 5 3 34 34 H 1.08003 * 120.05045 * 180.24859 * 7 6 5 35 35 H 0.97008 * 119.99877 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.49985 * 298.56335 * 14 12 11 37 37 H 1.08998 * 109.50016 * 58.63184 * 14 12 11 38 38 H 1.09000 * 109.73502 * 295.12108 * 15 14 12 39 39 H 1.08996 * 109.66550 * 174.55214 * 15 14 12 40 40 H 0.97002 * 120.00019 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.58745 * 173.64831 * 25 16 15 42 42 H 1.08997 * 109.58705 * 293.93057 * 25 16 15 43 43 H 0.96704 * 113.99518 * 180.16086 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1958 0.0000 4 9 1.5252 2.3664 0.0005 5 6 3.5853 1.1960 -0.0005 6 6 4.2828 0.0012 -0.0005 7 6 3.6024 -1.1987 0.0053 8 6 2.2065 -1.2073 -0.0005 9 6 1.4721 -2.4906 0.0000 10 8 0.2633 -2.4990 0.1266 11 7 2.1431 -3.6510 -0.1398 12 6 1.4154 -4.9225 -0.1398 13 1 0.4486 -4.7876 -0.6246 14 6 1.2018 -5.3877 1.3024 15 6 0.4057 -6.7016 1.2980 16 7 1.1105 -7.6720 0.4494 17 6 1.4432 -8.9094 0.9328 18 1 2.3489 -9.3938 0.5992 19 6 0.6163 -9.5408 1.8517 20 7 1.0761 -10.5425 2.5712 21 14 -1.1489 -8.9689 2.0673 22 1 -1.1950 -7.8709 3.0660 23 1 -1.6724 -8.4780 0.7673 24 1 -1.9825 -10.1034 2.5400 25 6 1.4461 -7.2921 -0.9296 26 6 2.2257 -5.9737 -0.9019 27 1 3.1826 -6.1273 -0.4033 28 8 2.4509 -5.5245 -2.2397 29 1 -0.3633 -0.1412 1.0179 30 1 -0.3634 0.9521 -0.3867 31 1 -0.3634 -0.8110 -0.6313 32 1 4.1231 2.1326 -0.0001 33 1 5.3628 0.0080 -0.0005 34 1 4.1489 -2.1303 0.0093 35 1 3.1078 -3.6443 -0.2411 36 1 2.1684 -5.5468 1.7803 37 1 0.6454 -4.6279 1.8511 38 1 -0.5933 -6.5253 0.8993 39 1 0.3327 -7.0896 2.3139 40 1 0.4984 -10.9836 3.2136 41 1 2.0597 -8.0700 -1.3838 42 1 0.5303 -7.1655 -1.5069 43 1 2.9576 -6.1441 -2.7825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090278730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -101.807688 kcal Electronic energy + Delta-G solvation = -27492.280334 eV Core-core repulsion = 23451.603634 eV Total energy + Delta-G solvation = -4040.676700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.97321 -41.59776 -40.11137 -38.91692 -37.09785 -35.97613 -34.13995 -33.67986 -32.58204 -31.29190 -30.54779 -28.23857 -26.94403 -25.00695 -24.26028 -23.64981 -22.65101 -21.67367 -21.33513 -19.32828 -18.81029 -18.10207 -17.90358 -17.38975 -17.09680 -16.84688 -16.79495 -16.62603 -16.16848 -16.03355 -15.52447 -15.22572 -14.94577 -14.66224 -14.44453 -14.27183 -14.17837 -14.00601 -13.85881 -13.64741 -13.36041 -13.18324 -12.97841 -12.93153 -12.84174 -12.65642 -12.31504 -12.15328 -11.93941 -11.71456 -11.44681 -11.14086 -10.84561 -10.64400 -10.25774 -9.91470 -9.70582 -8.92921 -8.21181 -5.60773 -0.33635 0.09764 1.28599 1.39392 1.47294 1.73375 1.98713 2.37907 2.63764 2.93762 3.09903 3.20139 3.34466 3.54627 3.66852 3.79151 3.88517 3.93710 4.00370 4.10013 4.22820 4.25964 4.31680 4.53823 4.58940 4.60670 4.66489 4.70557 4.81335 4.86889 4.88374 4.91397 5.03523 5.06094 5.13587 5.21990 5.23506 5.30385 5.44776 5.77857 5.85787 6.11404 6.49321 6.80203 6.92890 7.16126 7.54320 7.97060 8.98037 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.003063 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.466932 B = 9140.446669 C = 9666.636116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C 0.068 3.932 4 F -0.143 7.143 5 C -0.116 4.116 6 C -0.094 4.094 7 C -0.084 4.084 8 C -0.126 4.126 9 C 0.552 3.448 10 O -0.566 6.566 11 N -0.696 5.696 12 C 0.168 3.832 13 H 0.067 0.933 14 C -0.127 4.127 15 C 0.123 3.877 16 N -0.613 5.613 17 C -0.250 4.250 18 H 0.062 0.938 19 C -0.021 4.021 20 N -0.951 5.951 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.307 1.307 25 C 0.118 3.882 26 C 0.101 3.899 27 H 0.075 0.925 28 O -0.569 6.569 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.167 0.833 33 H 0.180 0.820 34 H 0.158 0.842 35 H 0.413 0.587 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.616 23.447 -7.618 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C 0.049 3.951 4 F -0.122 7.122 5 C -0.135 4.135 6 C -0.111 4.111 7 C -0.103 4.103 8 C -0.130 4.130 9 C 0.341 3.659 10 O -0.447 6.447 11 N -0.347 5.347 12 C 0.063 3.937 13 H 0.085 0.915 14 C -0.167 4.167 15 C -0.002 4.002 16 N -0.339 5.339 17 C -0.380 4.380 18 H 0.080 0.920 19 C -0.217 4.217 20 N -0.596 5.596 21 Si 0.764 3.236 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.236 1.236 25 C -0.008 4.008 26 C 0.040 3.960 27 H 0.092 0.908 28 O -0.376 6.376 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.197 0.803 34 H 0.176 0.824 35 H 0.251 0.749 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.382 23.854 -7.244 26.301 hybrid contribution -0.815 -0.689 0.237 1.093 sum 7.568 23.165 -7.008 25.357 Atomic orbital electron populations 1.20864 0.90073 1.02842 1.03274 1.20104 0.97557 0.91507 0.98958 1.17612 0.91104 0.80202 1.06201 1.91475 1.80802 1.45684 1.94214 1.21732 0.90938 1.01985 0.98829 1.21400 1.02361 0.89808 0.97537 1.21720 0.91453 1.00955 0.96166 1.19587 0.94804 0.91371 1.07205 1.18534 0.86873 0.84430 0.76065 1.90737 1.15397 1.87585 1.50986 1.45711 1.11555 1.04527 1.72872 1.20687 0.95844 0.82163 0.95008 0.91494 1.22302 1.01626 0.96746 0.96062 1.21448 0.94056 0.89588 0.95122 1.44388 1.68503 1.12050 1.08977 1.18828 1.03397 0.93571 1.22202 0.92043 1.25943 1.00846 0.96296 0.98603 1.69904 1.37119 1.26799 1.25764 0.86089 0.82657 0.76343 0.78462 1.19865 1.19487 1.23591 1.21773 0.98043 0.95601 0.85404 1.22282 0.97983 0.92370 0.83372 0.90763 1.86460 1.78751 1.49359 1.23034 0.91158 0.91366 0.90250 0.81498 0.80304 0.82409 0.74884 0.90511 0.91352 0.95745 0.92327 0.92769 0.90370 0.95171 0.75222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.92 8.55 71.24 0.61 -2.31 16 2 C -0.08 -1.86 5.92 -19.56 -0.12 -1.97 16 3 C 0.07 1.33 7.24 22.34 0.16 1.49 16 4 F -0.14 -3.02 16.35 44.97 0.74 -2.29 16 5 C -0.12 -1.45 10.02 22.37 0.22 -1.23 16 6 C -0.09 -0.91 10.03 22.23 0.22 -0.68 16 7 C -0.08 -1.17 9.52 22.53 0.21 -0.96 16 8 C -0.13 -2.80 5.87 -20.09 -0.12 -2.91 16 9 C 0.55 15.43 7.66 86.79 0.66 16.10 16 10 O -0.57 -20.02 13.05 -3.87 -0.05 -20.07 16 11 N -0.70 -17.18 4.87 -445.29 -2.17 -19.34 16 12 C 0.17 5.15 2.11 45.02 0.10 5.25 16 13 H 0.07 2.42 7.58 -2.39 -0.02 2.41 16 14 C -0.13 -4.34 5.67 30.82 0.17 -4.17 16 15 C 0.12 5.22 4.24 86.51 0.37 5.59 16 16 N -0.61 -27.39 2.68 -698.28 -1.87 -29.26 16 17 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 19 C -0.02 -1.18 5.24 84.86 0.45 -0.74 16 20 N -0.95 -58.02 13.97 21.65 0.30 -57.72 16 21 Si 0.94 46.32 24.40 68.60 1.67 48.00 16 22 H -0.27 -12.83 6.50 99.48 0.65 -12.18 16 23 H -0.27 -13.17 6.95 99.48 0.69 -12.47 16 24 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 25 C 0.12 4.17 6.14 86.37 0.53 4.70 16 26 C 0.10 2.82 3.14 30.67 0.10 2.92 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 O -0.57 -13.21 13.16 -148.98 -1.96 -15.17 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.54 7.42 -2.39 -0.02 1.52 16 31 H 0.08 2.35 5.98 -2.38 -0.01 2.33 16 32 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 34 H 0.16 1.36 6.47 -2.91 -0.02 1.34 16 35 H 0.41 7.43 6.69 -92.70 -0.62 6.81 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.02 1.06 7.15 -2.39 -0.02 1.04 16 39 H 0.06 2.72 4.95 -2.39 -0.01 2.70 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.08 2.62 7.93 -2.39 -0.02 2.61 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.40 5.80 9.08 -74.05 -0.67 5.13 16 Total: -1.00 -72.50 346.83 0.77 -71.73 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.30 Total: 15.71 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 4.41 Total: 8.42 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -3.73 Total: -106.33 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -2.01 Total: -35.24 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.74 Total: -2.29 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.67 Total: 48.00 kcal Total: -72.50 0.77 -71.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090278730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.077 kcal (2) G-P(sol) polarization free energy of solvation -72.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds