Wall clock time and date at job start Fri Apr 10 2020 18:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38336 * 119.86960 * 2 1 4 4 C 1.37945 * 120.17373 * 179.69891 * 3 2 1 5 5 C 1.39590 * 119.90689 * 0.51984 * 4 3 2 6 6 C 1.47848 * 120.13440 * 179.74471 * 5 4 3 7 7 O 1.21549 * 120.00101 * 179.73115 * 6 5 4 8 8 N 1.34777 * 120.00162 * 359.72945 * 6 5 4 9 9 C 1.46504 * 120.00322 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.45739 * 325.03256 * 9 8 6 11 11 C 1.53034 * 109.45561 * 85.00412 * 9 8 6 12 12 C 1.53197 * 109.30828 * 181.38979 * 11 9 8 13 13 N 1.46928 * 108.77423 * 305.35851 * 12 11 9 14 14 C 1.36929 * 120.63162 * 233.59085 * 13 12 11 15 15 H 1.08000 * 120.00027 * 152.02104 * 14 13 12 16 16 C 1.38816 * 120.00312 * 332.01318 * 14 13 12 17 17 N 1.31616 * 119.99645 * 342.88088 * 16 14 13 18 18 Si 1.86797 * 119.99987 * 162.59532 * 16 14 13 19 19 H 1.48500 * 109.47281 * 266.51043 * 18 16 14 20 20 H 1.48497 * 109.47253 * 26.51425 * 18 16 14 21 21 H 1.48501 * 109.46944 * 146.51417 * 18 16 14 22 22 C 1.46925 * 118.73362 * 53.86492 * 13 12 11 23 23 C 1.53040 * 109.45782 * 205.07251 * 9 8 6 24 24 H 1.08999 * 109.49541 * 298.59286 * 23 9 8 25 25 O 1.42891 * 109.50079 * 58.66533 * 23 9 8 26 26 C 1.39529 * 119.73179 * 359.47846 * 5 4 3 27 27 C 1.38207 * 119.82924 * 0.27210 * 26 5 4 28 28 F 1.35101 * 119.95594 * 180.02562 * 27 26 5 29 29 H 1.08996 * 109.47645 * 270.03208 * 1 2 3 30 30 H 1.09009 * 109.46603 * 30.03037 * 1 2 3 31 31 H 1.08999 * 109.46992 * 150.02647 * 1 2 3 32 32 H 1.07999 * 119.91380 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.04654 * 180.26977 * 4 3 2 34 34 H 0.97003 * 120.00050 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.50256 * 61.43858 * 11 9 8 36 36 H 1.09007 * 109.52654 * 301.34780 * 11 9 8 37 37 H 1.09008 * 109.58380 * 185.57989 * 12 11 9 38 38 H 1.08991 * 109.70714 * 65.22210 * 12 11 9 39 39 H 0.97003 * 120.00029 * 179.72447 * 17 16 14 40 40 H 1.09001 * 109.58930 * 65.92608 * 22 13 12 41 41 H 1.09003 * 109.58076 * 186.35083 * 22 13 12 42 42 H 0.96706 * 113.99985 * 179.97438 * 25 23 9 43 43 H 1.08004 * 120.08477 * 180.29117 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1996 0.0000 4 6 3.5754 1.2069 0.0063 5 6 4.2778 0.0006 0.0016 6 6 5.7563 0.0027 0.0026 7 8 6.3655 -1.0491 0.0035 8 7 6.4286 1.1708 0.0025 9 6 7.8936 1.1728 0.0040 10 1 8.2572 0.3316 0.5940 11 6 8.4050 1.0468 -1.4328 12 6 9.9366 1.0143 -1.4244 13 7 10.4308 2.1992 -0.7097 14 6 11.3387 3.0396 -1.2965 15 1 11.3669 4.0829 -1.0189 16 6 12.2232 2.5506 -2.2482 17 7 12.4306 1.2548 -2.3494 18 14 13.1128 3.7310 -3.3903 19 1 12.3412 3.8764 -4.6508 20 1 13.2395 5.0560 -2.7319 21 1 14.4650 3.1991 -3.6964 22 6 9.9368 2.4617 0.6488 23 6 8.4010 2.4810 0.6151 24 1 8.0579 3.3214 0.0117 25 8 7.8978 2.6124 1.9460 26 6 3.5790 -1.2070 0.0017 27 6 2.1969 -1.2016 0.0007 28 9 1.5177 -2.3694 0.0013 29 1 -0.3634 0.0006 1.0276 30 1 -0.3633 0.8898 -0.5144 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6524 2.1328 -0.0004 33 1 4.1112 2.1447 0.0107 34 1 5.9425 2.0102 0.0021 35 1 8.0625 1.9007 -2.0172 36 1 8.0242 0.1264 -1.8757 37 1 10.3080 1.0245 -2.4492 38 1 10.2824 0.1124 -0.9194 39 1 13.0456 0.9128 -3.0171 40 1 10.2804 1.6754 1.3210 41 1 10.3082 3.4272 0.9924 42 1 8.1805 3.4208 2.3953 43 1 4.1167 -2.1437 0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090412705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:53 Heat of formation + Delta-G solvation = -87.005375 kcal Electronic energy + Delta-G solvation = -27010.762621 eV Core-core repulsion = 22970.727797 eV Total energy + Delta-G solvation = -4040.034824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.15794 -40.33293 -38.87891 -37.74214 -35.44132 -34.44616 -33.28631 -31.97660 -30.90125 -30.01859 -28.68315 -27.60923 -25.16908 -23.24473 -22.94144 -22.34057 -21.75404 -20.33494 -19.65790 -18.28216 -17.11758 -16.94782 -16.58555 -16.27756 -15.98311 -15.74266 -15.56929 -14.89438 -14.65661 -14.33021 -14.02419 -13.92743 -13.75481 -13.64213 -13.50815 -13.22997 -12.83396 -12.74501 -12.35921 -12.23761 -12.05589 -11.93823 -11.59480 -11.53382 -11.13823 -10.91063 -10.71337 -10.36809 -10.27908 -10.01037 -9.92306 -9.76863 -9.48945 -9.28019 -9.00725 -8.77625 -8.48179 -6.80344 -5.87389 -3.32360 0.46184 0.86865 2.69051 3.17299 3.33038 3.39719 3.41470 3.58202 3.95446 4.28475 4.34990 4.37355 4.48549 4.65930 4.72387 4.90049 5.15235 5.17931 5.25922 5.29574 5.35187 5.44571 5.51059 5.61006 5.65584 5.72217 5.75286 5.92483 5.93448 5.95268 6.07643 6.25876 6.44826 6.48348 6.49969 6.63575 6.74067 6.80579 7.25851 7.57654 7.64495 7.70595 7.87930 8.32300 8.35094 9.10363 9.72607 10.28625 11.20990 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.002615 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.112602 B =10706.739550 C =10957.718674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.100 4.100 3 C -0.100 4.100 4 C -0.092 4.092 5 C -0.103 4.103 6 C 0.555 3.445 7 O -0.533 6.533 8 N -0.708 5.708 9 C 0.162 3.838 10 H 0.090 0.910 11 C -0.147 4.147 12 C 0.171 3.829 13 N -0.588 5.588 14 C -0.260 4.260 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.898 5.898 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.278 1.278 21 H -0.290 1.290 22 C 0.121 3.879 23 C 0.080 3.920 24 H 0.057 0.943 25 O -0.571 6.571 26 C -0.093 4.093 27 C 0.088 3.912 28 F -0.135 7.135 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.396 0.604 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.025 0.975 39 H 0.256 0.744 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.374 0.626 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.142 1.944 5.216 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.101 4.101 3 C -0.118 4.118 4 C -0.111 4.111 5 C -0.106 4.106 6 C 0.341 3.659 7 O -0.411 6.411 8 N -0.357 5.357 9 C 0.059 3.941 10 H 0.108 0.892 11 C -0.187 4.187 12 C 0.045 3.955 13 N -0.312 5.312 14 C -0.390 4.390 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.542 5.542 18 Si 0.734 3.266 19 H -0.214 1.214 20 H -0.204 1.204 21 H -0.217 1.217 22 C -0.007 4.007 23 C 0.019 3.981 24 H 0.075 0.925 25 O -0.376 6.376 26 C -0.112 4.112 27 C 0.069 3.931 28 F -0.114 7.114 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.230 0.770 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.221 0.779 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.844 0.492 4.964 22.406 hybrid contribution 0.467 1.283 -0.493 1.451 sum -21.377 1.775 4.472 21.911 Atomic orbital electron populations 1.20788 0.89877 1.03615 1.03076 1.20141 0.97273 0.91943 1.00792 1.20860 0.93708 0.97249 1.00018 1.21397 0.94384 0.97473 0.97813 1.19873 0.93737 0.93349 1.03675 1.18082 0.86460 0.84368 0.77020 1.90796 1.69465 1.31179 1.49680 1.46007 1.08034 1.07788 1.73898 1.21067 0.77319 0.98014 0.97734 0.89218 1.22610 1.00979 1.01244 0.93859 1.20834 0.86548 0.88440 0.99718 1.44067 1.48651 1.28359 1.10130 1.19171 1.10070 0.90157 1.19581 0.91486 1.25094 0.97011 0.95809 1.01491 1.70037 1.37347 1.11380 1.35415 0.86245 0.78826 0.80326 0.81154 1.21355 1.20357 1.21681 1.21615 0.90149 0.99700 0.89218 1.22874 0.96658 0.96279 0.82327 0.92521 1.86481 1.75722 1.46787 1.28583 1.21243 0.91886 0.99817 0.98273 1.17364 0.89614 0.81215 1.04904 1.91498 1.79876 1.46013 1.93996 0.90453 0.90654 0.90959 0.84370 0.84775 0.76967 0.92266 0.91837 0.88850 0.95721 0.93400 0.95221 0.92089 0.77941 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.83 36.01 0.35 -0.38 16 2 C -0.10 -0.89 5.89 -104.47 -0.62 -1.51 16 3 C -0.10 -0.79 9.68 -39.65 -0.38 -1.18 16 4 C -0.09 -0.86 9.54 -39.18 -0.37 -1.24 16 5 C -0.10 -1.29 5.87 -104.98 -0.62 -1.91 16 6 C 0.55 8.77 7.74 -12.33 -0.10 8.68 16 7 O -0.53 -10.50 16.01 5.32 0.09 -10.42 16 8 N -0.71 -10.39 4.87 -54.71 -0.27 -10.66 16 9 C 0.16 2.87 2.11 -67.89 -0.14 2.73 16 10 H 0.09 1.84 7.57 -51.93 -0.39 1.45 16 11 C -0.15 -2.84 5.65 -26.61 -0.15 -2.99 16 12 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 13 N -0.59 -14.17 2.99 -172.05 -0.51 -14.68 16 14 C -0.26 -6.86 9.58 -15.06 -0.14 -7.01 16 15 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 16 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 17 N -0.90 -25.64 11.20 55.49 0.62 -25.01 16 18 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.12 2.40 6.17 -3.48 -0.02 2.38 16 23 C 0.08 1.31 3.16 -26.38 -0.08 1.23 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 25 O -0.57 -8.20 13.16 -35.23 -0.46 -8.67 16 26 C -0.09 -1.15 9.57 -39.11 -0.37 -1.53 16 27 C 0.09 0.97 7.23 -39.47 -0.29 0.69 16 28 F -0.14 -1.54 16.46 2.25 0.04 -1.50 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.35 8.08 -51.92 -0.42 -0.07 16 31 H 0.07 0.47 7.63 -51.93 -0.40 0.07 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.13 0.98 6.40 -52.48 -0.34 0.64 16 34 H 0.40 4.64 6.64 -40.82 -0.27 4.37 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 37 H 0.09 2.45 6.05 -51.92 -0.31 2.14 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 42 H 0.37 3.78 9.09 45.56 0.41 4.19 16 43 H 0.15 1.94 7.65 -52.48 -0.40 1.54 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -32.17 357.98 -8.21 -40.38 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.04 Total: 7.07 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -3.04 Total: 2.04 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.16 Total: -50.36 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.38 Total: -19.09 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.17 -8.21 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090412705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.624 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds