Wall clock time and date at job start Fri Apr 10 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35470 * 117.00037 * 2 1 4 4 N 1.32426 * 119.11230 * 359.97438 * 3 2 1 5 5 C 1.32138 * 120.97759 * 180.02562 * 4 3 2 6 6 C 1.38804 * 119.21849 * 0.02562 * 5 4 3 7 7 C 1.39464 * 118.38746 * 359.97438 * 6 5 4 8 8 C 1.48466 * 120.51761 * 180.02562 * 7 6 5 9 9 O 1.21473 * 119.99500 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00053 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99952 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46116 * 324.97846 * 11 10 8 13 13 C 1.53041 * 109.45693 * 84.93365 * 11 10 8 14 14 C 1.53192 * 109.30937 * 181.38804 * 13 11 10 15 15 N 1.46928 * 108.77673 * 305.36169 * 14 13 11 16 16 C 1.36934 * 120.63065 * 233.63529 * 15 14 13 17 17 H 1.07996 * 120.00564 * 27.65814 * 16 15 14 18 18 C 1.38814 * 119.99768 * 207.66029 * 16 15 14 19 19 N 1.31620 * 120.00021 * 17.37344 * 18 16 15 20 20 Si 1.86804 * 120.00076 * 197.37276 * 18 16 15 21 21 H 1.48492 * 109.47134 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46966 * 120.00259 * 20 18 16 23 23 H 1.48502 * 109.47129 * 239.99949 * 20 18 16 24 24 C 1.46922 * 118.73421 * 53.61028 * 15 14 13 25 25 C 1.53041 * 109.46088 * 205.00275 * 11 10 8 26 26 H 1.08998 * 109.49625 * 298.59646 * 25 11 10 27 27 O 1.42893 * 109.49663 * 58.66316 * 25 11 10 28 28 N 1.32085 * 119.11772 * 179.72827 * 3 2 1 29 29 H 1.09005 * 109.46736 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47850 * 300.00208 * 1 2 3 31 31 H 1.09002 * 109.47173 * 60.00857 * 1 2 3 32 32 H 1.08001 * 120.39041 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.80878 * 179.97438 * 6 5 4 34 34 H 0.96998 * 119.99993 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.49759 * 301.33705 * 13 11 10 36 36 H 1.08995 * 109.49578 * 61.43523 * 13 11 10 37 37 H 1.09009 * 109.58440 * 185.58188 * 14 13 11 38 38 H 1.08995 * 109.59122 * 65.15219 * 14 13 11 39 39 H 0.97000 * 120.00066 * 179.97438 * 19 18 16 40 40 H 1.09010 * 109.58614 * 186.60064 * 24 15 14 41 41 H 1.09004 * 109.70295 * 66.25315 * 24 15 14 42 42 H 0.96704 * 113.99645 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3056 2.3064 -0.0005 5 6 1.8669 3.5026 -0.0010 6 6 3.2514 3.6015 -0.0016 7 6 4.0001 2.4248 -0.0010 8 6 5.4839 2.4754 -0.0010 9 8 6.0550 3.5476 -0.0010 10 7 6.1972 1.3319 -0.0010 11 6 7.6614 1.3819 -0.0015 12 1 7.9954 2.2353 -0.5916 13 6 8.1670 1.5270 1.4356 14 6 9.6965 1.6138 1.4282 15 7 10.2329 0.4467 0.7147 16 6 11.1690 -0.3611 1.3031 17 1 11.2054 -0.4510 2.3787 18 6 12.0714 -1.0644 0.5171 19 7 12.2656 -0.7132 -0.7365 20 14 13.0102 -2.5095 1.2382 21 1 12.6147 -2.6981 2.6570 22 1 12.6941 -3.7391 0.4679 23 1 14.4685 -2.2395 1.1631 24 6 9.7453 0.1626 -0.6418 25 6 8.2153 0.0921 -0.6113 26 1 7.9019 -0.7595 -0.0075 27 8 7.7180 -0.0580 -1.9424 28 7 3.3639 1.2558 0.0055 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3635 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.2555 4.3929 -0.0010 33 1 3.7371 4.5661 -0.0024 34 1 5.7411 0.4759 -0.0013 35 1 7.7533 2.4337 1.8771 36 1 7.8545 0.6619 2.0203 37 1 10.0672 1.6175 2.4533 38 1 10.0083 2.5269 0.9213 39 1 12.8964 -1.2044 -1.2857 40 1 10.1483 -0.7911 -0.9827 41 1 10.0611 0.9559 -1.3195 42 1 8.0296 -0.8561 -2.3910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090423509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:19 Heat of formation + Delta-G solvation = -63.373309 kcal Electronic energy + Delta-G solvation = -27237.313084 eV Core-core repulsion = 23218.222985 eV Total energy + Delta-G solvation = -4019.090099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.52224 -41.08493 -39.66035 -39.05516 -36.91122 -35.98880 -35.16172 -33.89078 -32.63469 -31.27681 -30.53873 -28.54361 -27.47428 -26.26375 -24.97409 -24.09816 -23.46688 -21.99445 -21.27375 -19.95461 -19.32016 -18.85683 -18.13938 -17.96657 -17.56777 -17.37071 -16.69953 -16.58409 -16.22670 -15.79146 -15.63477 -15.56003 -15.19035 -15.11968 -14.84283 -14.73171 -14.39871 -13.88082 -13.58318 -13.37564 -13.07364 -12.95008 -12.69248 -12.54958 -12.38742 -12.35167 -12.14695 -12.04245 -12.00503 -11.89614 -11.69404 -11.30606 -10.98138 -10.61491 -10.46379 -10.26263 -10.12124 -8.77128 -7.91073 -5.37720 -0.69300 -0.11215 1.37031 1.47424 1.50269 1.56885 1.60550 1.86564 2.49529 2.65014 2.84075 3.07370 3.21677 3.30323 3.52126 3.61783 3.82110 3.86728 4.02650 4.17432 4.28813 4.38903 4.39277 4.41091 4.43288 4.56488 4.66833 4.72139 4.84755 4.90050 4.96854 5.03683 5.14868 5.29262 5.32111 5.44965 5.55848 5.64193 5.99405 6.30973 6.33919 6.77607 6.80145 6.95969 7.09720 7.77323 8.30034 9.15900 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.002801 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.842921 B = 9992.640083 C =10554.918129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.307 6.307 3 C 0.486 3.514 4 N -0.553 5.553 5 C 0.205 3.795 6 C -0.203 4.203 7 C 0.155 3.845 8 C 0.567 3.433 9 O -0.551 6.551 10 N -0.683 5.683 11 C 0.167 3.833 12 H 0.068 0.932 13 C -0.124 4.124 14 C 0.143 3.857 15 N -0.605 5.605 16 C -0.264 4.264 17 H 0.073 0.927 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.294 1.294 24 C 0.158 3.842 25 C 0.091 3.909 26 H 0.062 0.938 27 O -0.574 6.574 28 N -0.527 5.527 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.233 0.767 33 H 0.180 0.820 34 H 0.415 0.585 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.015 0.985 39 H 0.252 0.748 40 H 0.071 0.929 41 H 0.000 1.000 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.253 4.748 1.523 25.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.183 3.817 4 N -0.283 5.283 5 C 0.038 3.962 6 C -0.227 4.227 7 C 0.009 3.991 8 C 0.351 3.649 9 O -0.428 6.428 10 N -0.332 5.332 11 C 0.062 3.938 12 H 0.086 0.914 13 C -0.164 4.164 14 C 0.017 3.983 15 N -0.330 5.330 16 C -0.394 4.394 17 H 0.091 0.909 18 C -0.244 4.244 19 N -0.580 5.580 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.215 1.215 23 H -0.222 1.222 24 C 0.031 3.969 25 C 0.030 3.970 26 H 0.080 0.920 27 O -0.381 6.381 28 N -0.256 5.256 29 H 0.147 0.853 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.249 0.751 33 H 0.197 0.803 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.033 0.967 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.018 0.982 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -25.398 4.733 1.572 25.883 hybrid contribution 1.365 -0.828 -0.197 1.609 sum -24.033 3.905 1.376 24.387 Atomic orbital electron populations 1.23307 0.73376 1.05542 1.03275 1.86110 1.25597 1.22293 1.86839 1.20732 0.85488 0.85851 0.89626 1.68146 1.41189 0.99622 1.19352 1.23927 0.91796 0.95204 0.85240 1.23093 0.96374 1.00611 1.02610 1.21318 0.93861 0.89218 0.94711 1.18044 0.85604 0.84305 0.76916 1.90781 1.70936 1.29732 1.51375 1.45856 1.06774 1.09227 1.71312 1.20856 0.78335 0.97663 0.96918 0.91405 1.22243 0.97057 1.02451 0.94697 1.21046 0.91568 0.88908 0.96804 1.44266 1.46151 1.27985 1.14577 1.19575 1.07945 1.19912 0.91971 0.90943 1.25823 0.98305 1.03244 0.97009 1.70186 1.37839 1.41122 1.08824 0.85191 0.77569 0.79220 0.78344 1.18991 1.21463 1.22156 1.21202 0.89399 1.00121 0.86136 1.22579 0.94888 0.96147 0.83415 0.92004 1.86395 1.73848 1.49900 1.27963 1.67296 1.09377 1.29897 1.19078 0.85342 0.91292 0.91355 0.75114 0.80304 0.74779 0.90465 0.91000 0.91257 0.96675 0.93917 0.91071 0.98223 0.75825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.36 113.37 1.17 1.65 16 2 O -0.31 -6.69 10.56 -87.69 -0.93 -7.62 16 3 C 0.49 11.49 8.48 180.61 1.53 13.02 16 4 N -0.55 -10.08 9.20 -313.44 -2.88 -12.96 16 5 C 0.21 2.67 11.30 84.78 0.96 3.63 16 6 C -0.20 -3.71 9.71 22.70 0.22 -3.49 16 7 C 0.16 4.04 6.79 41.98 0.29 4.32 16 8 C 0.57 17.91 7.79 86.97 0.68 18.58 16 9 O -0.55 -19.83 16.08 -3.63 -0.06 -19.89 16 10 N -0.68 -21.87 4.91 -444.69 -2.18 -24.06 16 11 C 0.17 6.09 2.12 45.02 0.10 6.19 16 12 H 0.07 2.83 7.58 -2.39 -0.02 2.81 16 13 C -0.12 -4.41 5.65 30.67 0.17 -4.24 16 14 C 0.14 5.97 6.52 86.36 0.56 6.54 16 15 N -0.61 -29.91 2.99 -699.08 -2.09 -32.01 16 16 C -0.26 -14.13 9.59 84.03 0.81 -13.32 16 17 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 18 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 19 N -0.93 -53.95 11.19 21.65 0.24 -53.71 16 20 Si 0.97 43.66 29.59 68.60 2.03 45.69 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 C 0.16 7.52 4.94 86.36 0.43 7.94 16 25 C 0.09 3.45 3.14 30.67 0.10 3.55 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 O -0.57 -20.06 13.16 -148.98 -1.96 -22.02 16 28 N -0.53 -14.26 9.73 -302.69 -2.94 -17.21 16 29 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 32 H 0.23 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.18 2.73 7.73 -2.91 -0.02 2.71 16 34 H 0.42 12.55 7.99 -92.71 -0.74 11.81 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.07 2.76 7.93 -2.38 -0.02 2.74 16 38 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.07 3.70 6.04 -2.38 -0.01 3.69 16 41 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 42 H 0.39 10.95 9.08 -74.05 -0.67 10.28 16 Total: -1.00 -71.74 355.66 -3.69 -75.44 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.34 Total: 26.17 kcal Atomic # 6 Polarization: 34.74 SS G_CDS: 7.42 Total: 42.16 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -9.86 Total: -139.94 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -2.94 Total: -49.52 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -71.74 -3.69 -75.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090423509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.063 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds