Wall clock time and date at job start Fri Apr 10 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37985 * 120.04715 * 2 1 4 4 C 1.38302 * 120.17004 * 180.25240 * 3 2 1 5 5 C 1.38596 * 120.26773 * 359.79419 * 4 3 2 6 6 F 1.35102 * 119.94984 * 179.97438 * 5 4 3 7 7 C 1.38163 * 120.09278 * 359.94846 * 5 4 3 8 8 C 1.39554 * 120.04632 * 179.77066 * 2 1 3 9 9 C 1.47863 * 120.13259 * 359.97438 * 8 2 1 10 10 O 1.21545 * 119.99646 * 353.72519 * 9 8 2 11 11 N 1.34774 * 119.99754 * 173.72205 * 9 8 2 12 12 C 1.46504 * 119.99774 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.44432 * 35.03655 * 12 11 9 14 14 C 1.53034 * 109.45931 * 275.06957 * 12 11 9 15 15 C 1.53192 * 109.31278 * 301.34121 * 14 12 11 16 16 N 1.46928 * 108.77783 * 305.37042 * 15 14 12 17 17 C 1.36936 * 120.62860 * 233.88298 * 16 15 14 18 18 H 1.08003 * 120.00049 * 150.52772 * 17 16 15 19 19 C 1.38813 * 120.00142 * 330.52855 * 17 16 15 20 20 N 1.31622 * 119.99878 * 345.33739 * 19 17 16 21 21 Si 1.86796 * 120.00194 * 165.33897 * 19 17 16 22 22 H 1.48503 * 109.47155 * 89.99794 * 21 19 17 23 23 H 1.48504 * 109.47297 * 209.99744 * 21 19 17 24 24 H 1.48496 * 109.47268 * 329.99822 * 21 19 17 25 25 C 1.46925 * 118.74027 * 53.60520 * 16 15 14 26 26 C 1.53040 * 109.45857 * 154.99993 * 12 11 9 27 27 H 1.09006 * 109.52225 * 178.62688 * 26 12 11 28 28 O 1.42905 * 109.49680 * 298.70118 * 26 12 11 29 29 H 1.08995 * 109.47185 * 263.74987 * 1 2 3 30 30 H 1.09003 * 109.47133 * 23.75092 * 1 2 3 31 31 H 1.09002 * 109.47237 * 143.74844 * 1 2 3 32 32 H 1.07992 * 119.91543 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.86654 * 179.76671 * 4 3 2 34 34 H 1.08001 * 120.08788 * 180.02562 * 7 5 4 35 35 H 0.97001 * 120.00125 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.49881 * 61.29287 * 14 12 11 37 37 H 1.08999 * 109.49894 * 181.36019 * 14 12 11 38 38 H 1.09003 * 109.58996 * 185.57882 * 15 14 12 39 39 H 1.09005 * 109.58270 * 65.15551 * 15 14 12 40 40 H 0.96999 * 120.00353 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.58427 * 66.17789 * 25 16 15 42 42 H 1.08990 * 109.58480 * 186.46533 * 25 16 15 43 43 H 0.96701 * 113.99866 * 179.83991 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1944 0.0000 4 6 3.5810 1.1974 -0.0053 5 6 4.2821 0.0019 -0.0063 6 9 5.6331 0.0123 -0.0120 7 6 3.6014 -1.2004 -0.0009 8 6 2.2058 -1.2080 0.0048 9 6 1.4705 -2.4908 0.0105 10 8 0.2605 -2.4972 0.1261 11 7 2.1419 -3.6529 -0.1124 12 6 1.4133 -4.9239 -0.1074 13 1 0.4511 -4.7926 -0.6024 14 6 1.1862 -5.3756 1.3371 15 6 2.5392 -5.5257 2.0397 16 7 3.3843 -6.4316 1.2499 17 6 3.9604 -7.5306 1.8291 18 1 4.1589 -8.4116 1.2368 19 6 4.2893 -7.5123 3.1776 20 7 4.3219 -6.3705 3.8316 21 14 4.6855 -9.1080 4.0641 22 1 6.1423 -9.3796 3.9673 23 1 4.2979 -8.9901 5.4928 24 1 3.9315 -10.2231 3.4371 25 6 3.5945 -6.1394 -0.1746 26 6 2.2297 -5.9825 -0.8523 27 1 1.6998 -6.9348 -0.8281 28 8 2.4150 -5.5743 -2.2092 29 1 -0.3633 -0.1119 1.0215 30 1 -0.3633 0.9406 -0.4139 31 1 -0.3634 -0.8287 -0.6077 32 1 1.6574 2.1293 -0.0004 33 1 4.1167 2.1351 -0.0091 34 1 4.1479 -2.1320 -0.0013 35 1 3.1075 -3.6477 -0.2051 36 1 0.5849 -4.6321 1.8605 37 1 0.6654 -6.3331 1.3412 38 1 2.3894 -5.9414 3.0361 39 1 3.0209 -4.5509 2.1168 40 1 4.5521 -6.3576 4.7738 41 1 4.1623 -5.2147 -0.2780 42 1 4.1432 -6.9590 -0.6385 43 1 2.9275 -6.1983 -2.7412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090456694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:24 Heat of formation + Delta-G solvation = -79.815041 kcal Electronic energy + Delta-G solvation = -28055.088462 eV Core-core repulsion = 24015.365435 eV Total energy + Delta-G solvation = -4039.723028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.93920 -40.42958 -38.88750 -37.55068 -35.47149 -34.27839 -32.45456 -32.07529 -31.22883 -29.96307 -28.60230 -26.77603 -25.40030 -24.13889 -22.45508 -22.14715 -21.57017 -20.74500 -18.77125 -18.28518 -17.13444 -16.73667 -16.58312 -15.94403 -15.74010 -15.68226 -15.28629 -14.95195 -14.73810 -14.32291 -14.08865 -13.86213 -13.76416 -13.54665 -13.34536 -13.10489 -12.68953 -12.34029 -12.08928 -11.98140 -11.86109 -11.75742 -11.68775 -11.51776 -11.19293 -10.91714 -10.68010 -10.42570 -10.23940 -9.99096 -9.85776 -9.46938 -9.44701 -9.27991 -8.75537 -8.57186 -8.51110 -6.78581 -5.89498 -3.36367 0.65699 1.02471 2.86905 3.31097 3.37494 3.38943 3.40173 3.69095 4.09752 4.33147 4.47772 4.51192 4.65363 4.78876 4.96892 5.11934 5.25859 5.27728 5.41566 5.46575 5.54447 5.64399 5.67688 5.76396 5.82836 5.85047 5.92341 5.97151 6.02116 6.16831 6.22062 6.41006 6.44060 6.52503 6.60701 6.65974 6.70499 6.89221 7.24328 7.56701 7.68524 7.78793 7.88182 8.33740 8.44364 9.08685 9.70155 10.25936 11.18579 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.003897 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.890364 B = 7183.646654 C = 7872.794892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.035 4.035 3 C -0.105 4.105 4 C -0.129 4.129 5 C 0.085 3.915 6 F -0.137 7.137 7 C -0.113 4.113 8 C -0.104 4.104 9 C 0.558 3.442 10 O -0.537 6.537 11 N -0.697 5.697 12 C 0.166 3.834 13 H 0.081 0.919 14 C -0.154 4.154 15 C 0.171 3.829 16 N -0.586 5.586 17 C -0.261 4.261 18 H 0.066 0.934 19 C 0.008 3.992 20 N -0.900 5.900 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.118 3.882 26 C 0.075 3.925 27 H 0.068 0.932 28 O -0.571 6.571 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.021 0.979 40 H 0.256 0.744 41 H 0.020 0.980 42 H 0.060 0.940 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 11.975 -9.322 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.037 4.037 3 C -0.123 4.123 4 C -0.148 4.148 5 C 0.066 3.934 6 F -0.116 7.116 7 C -0.132 4.132 8 C -0.107 4.107 9 C 0.345 3.655 10 O -0.416 6.416 11 N -0.348 5.348 12 C 0.062 3.938 13 H 0.099 0.901 14 C -0.194 4.194 15 C 0.046 3.954 16 N -0.310 5.310 17 C -0.390 4.390 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.543 5.543 21 Si 0.734 3.266 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.010 4.010 26 C 0.014 3.986 27 H 0.086 0.914 28 O -0.375 6.375 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.238 0.762 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.048 12.458 -8.855 16.097 hybrid contribution 1.567 -1.274 0.400 2.059 sum -3.481 11.184 -8.454 14.446 Atomic orbital electron populations 1.21078 0.89489 1.03032 1.03930 1.20121 0.97388 0.91199 0.94948 1.20890 0.92952 0.97956 1.00525 1.21296 0.94980 0.97176 1.01313 1.17491 0.77125 0.94267 1.04561 1.91524 1.28645 1.97374 1.94041 1.21363 0.93984 0.97876 1.00020 1.19727 0.92376 0.94109 1.04478 1.18016 0.87056 0.83480 0.76940 1.90690 1.13449 1.87094 1.50393 1.45901 1.11210 1.05380 1.72313 1.20872 0.94931 0.81483 0.96519 0.90095 1.22602 1.01697 1.00756 0.94324 1.20806 0.85774 0.92966 0.95864 1.43977 1.54898 1.28682 1.03482 1.19139 1.35534 0.91081 0.93285 0.91658 1.25099 0.99034 0.96677 0.98341 1.70003 1.51155 1.23619 1.09536 0.86274 0.78195 0.83102 0.79030 1.21295 1.21466 1.20389 1.21542 0.93088 0.98634 0.87697 1.22759 0.98570 0.96384 0.80885 0.91444 1.86483 1.77437 1.51316 1.22303 0.90461 0.92514 0.88351 0.84457 0.84431 0.84183 0.76183 0.91748 0.91376 0.89139 0.96086 0.93436 0.96195 0.92165 0.77938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 8.73 36.01 0.31 -1.09 16 2 C -0.04 -0.44 5.91 -104.22 -0.62 -1.06 16 3 C -0.11 -1.07 9.66 -39.65 -0.38 -1.45 16 4 C -0.13 -1.34 10.02 -39.43 -0.40 -1.74 16 5 C 0.08 1.08 7.29 -39.48 -0.29 0.80 16 6 F -0.14 -1.86 17.26 2.25 0.04 -1.82 16 7 C -0.11 -1.55 9.50 -39.11 -0.37 -1.93 16 8 C -0.10 -1.50 5.87 -104.97 -0.62 -2.12 16 9 C 0.56 9.33 7.67 -12.32 -0.09 9.23 16 10 O -0.54 -9.84 13.00 5.33 0.07 -9.77 16 11 N -0.70 -11.67 4.10 -54.71 -0.22 -11.89 16 12 C 0.17 2.91 2.47 -67.89 -0.17 2.74 16 13 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 14 C -0.15 -2.94 5.77 -26.61 -0.15 -3.09 16 15 C 0.17 3.92 5.03 -3.71 -0.02 3.90 16 16 N -0.59 -13.68 2.99 -172.32 -0.52 -14.19 16 17 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 18 H 0.07 1.66 7.87 -52.48 -0.41 1.25 16 19 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16 20 N -0.90 -25.23 11.14 55.49 0.62 -24.61 16 21 Si 0.90 20.97 29.58 -169.99 -5.03 15.94 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.12 2.24 5.85 -3.71 -0.02 2.22 16 26 C 0.07 1.24 3.36 -26.61 -0.09 1.15 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 O -0.57 -8.35 13.21 -35.23 -0.47 -8.81 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 31 H 0.10 1.36 5.85 -51.93 -0.30 1.06 16 32 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 1.90 6.45 -52.49 -0.34 1.57 16 35 H 0.40 6.55 4.94 -40.82 -0.20 6.35 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 39 H 0.02 0.51 7.74 -51.93 -0.40 0.10 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.02 0.39 6.64 -51.93 -0.34 0.04 16 42 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.37 3.90 9.08 45.56 0.41 4.31 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -30.23 349.47 -8.17 -38.40 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.80 Total: 10.74 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -3.13 Total: 0.74 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.12 Total: -50.70 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.40 Total: -18.58 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.23 -8.17 -38.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090456694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.415 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds