Wall clock time and date at job start Fri Apr 10 2020 18:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37985 * 120.04715 * 2 1 4 4 C 1.38302 * 120.17004 * 180.25240 * 3 2 1 5 5 C 1.38596 * 120.26773 * 359.79419 * 4 3 2 6 6 F 1.35102 * 119.94984 * 179.97438 * 5 4 3 7 7 C 1.38163 * 120.09278 * 359.94846 * 5 4 3 8 8 C 1.39554 * 120.04632 * 179.77066 * 2 1 3 9 9 C 1.47863 * 120.13259 * 359.97438 * 8 2 1 10 10 O 1.21545 * 119.99646 * 353.72519 * 9 8 2 11 11 N 1.34774 * 119.99754 * 173.72205 * 9 8 2 12 12 C 1.46504 * 119.99774 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.44432 * 35.03655 * 12 11 9 14 14 C 1.53034 * 109.45931 * 275.06957 * 12 11 9 15 15 C 1.53192 * 109.31278 * 301.34121 * 14 12 11 16 16 N 1.46928 * 108.77783 * 305.37042 * 15 14 12 17 17 C 1.36936 * 120.62860 * 233.88298 * 16 15 14 18 18 H 1.08003 * 120.00049 * 150.52772 * 17 16 15 19 19 C 1.38813 * 120.00142 * 330.52855 * 17 16 15 20 20 N 1.31622 * 119.99878 * 345.33739 * 19 17 16 21 21 Si 1.86796 * 120.00194 * 165.33897 * 19 17 16 22 22 H 1.48503 * 109.47155 * 89.99794 * 21 19 17 23 23 H 1.48504 * 109.47297 * 209.99744 * 21 19 17 24 24 H 1.48496 * 109.47268 * 329.99822 * 21 19 17 25 25 C 1.46925 * 118.74027 * 53.60520 * 16 15 14 26 26 C 1.53040 * 109.45857 * 154.99993 * 12 11 9 27 27 H 1.09006 * 109.52225 * 178.62688 * 26 12 11 28 28 O 1.42905 * 109.49680 * 298.70118 * 26 12 11 29 29 H 1.08995 * 109.47185 * 263.74987 * 1 2 3 30 30 H 1.09003 * 109.47133 * 23.75092 * 1 2 3 31 31 H 1.09002 * 109.47237 * 143.74844 * 1 2 3 32 32 H 1.07992 * 119.91543 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.86654 * 179.76671 * 4 3 2 34 34 H 1.08001 * 120.08788 * 180.02562 * 7 5 4 35 35 H 0.97001 * 120.00125 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.49881 * 61.29287 * 14 12 11 37 37 H 1.08999 * 109.49894 * 181.36019 * 14 12 11 38 38 H 1.09003 * 109.58996 * 185.57882 * 15 14 12 39 39 H 1.09005 * 109.58270 * 65.15551 * 15 14 12 40 40 H 0.96999 * 120.00353 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.58427 * 66.17789 * 25 16 15 42 42 H 1.08990 * 109.58480 * 186.46533 * 25 16 15 43 43 H 0.96701 * 113.99866 * 179.83991 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1944 0.0000 4 6 3.5810 1.1974 -0.0053 5 6 4.2821 0.0019 -0.0063 6 9 5.6331 0.0123 -0.0120 7 6 3.6014 -1.2004 -0.0009 8 6 2.2058 -1.2080 0.0048 9 6 1.4705 -2.4908 0.0105 10 8 0.2605 -2.4972 0.1261 11 7 2.1419 -3.6529 -0.1124 12 6 1.4133 -4.9239 -0.1074 13 1 0.4511 -4.7926 -0.6024 14 6 1.1862 -5.3756 1.3371 15 6 2.5392 -5.5257 2.0397 16 7 3.3843 -6.4316 1.2499 17 6 3.9604 -7.5306 1.8291 18 1 4.1589 -8.4116 1.2368 19 6 4.2893 -7.5123 3.1776 20 7 4.3219 -6.3705 3.8316 21 14 4.6855 -9.1080 4.0641 22 1 6.1423 -9.3796 3.9673 23 1 4.2979 -8.9901 5.4928 24 1 3.9315 -10.2231 3.4371 25 6 3.5945 -6.1394 -0.1746 26 6 2.2297 -5.9825 -0.8523 27 1 1.6998 -6.9348 -0.8281 28 8 2.4150 -5.5743 -2.2092 29 1 -0.3633 -0.1119 1.0215 30 1 -0.3633 0.9406 -0.4139 31 1 -0.3634 -0.8287 -0.6077 32 1 1.6574 2.1293 -0.0004 33 1 4.1167 2.1351 -0.0091 34 1 4.1479 -2.1320 -0.0013 35 1 3.1075 -3.6477 -0.2051 36 1 0.5849 -4.6321 1.8605 37 1 0.6654 -6.3331 1.3412 38 1 2.3894 -5.9414 3.0361 39 1 3.0209 -4.5509 2.1168 40 1 4.5521 -6.3576 4.7738 41 1 4.1623 -5.2147 -0.2780 42 1 4.1432 -6.9590 -0.6385 43 1 2.9275 -6.1983 -2.7412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090456694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:23 Heat of formation + Delta-G solvation = -99.783088 kcal Electronic energy + Delta-G solvation = -28055.954342 eV Core-core repulsion = 24015.365435 eV Total energy + Delta-G solvation = -4040.588907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.95145 -41.66352 -40.14034 -38.82202 -36.95995 -35.76637 -33.86168 -33.17227 -32.67850 -31.45401 -30.14473 -27.80652 -27.16691 -25.22883 -24.00270 -23.68210 -22.80837 -21.92780 -20.31508 -19.44633 -18.77869 -18.00876 -17.82044 -17.09938 -16.85625 -16.79340 -16.66330 -16.54575 -16.09547 -15.84935 -15.53752 -15.19426 -14.98913 -14.71508 -14.61330 -14.36175 -14.16052 -13.77995 -13.56717 -13.25968 -13.03289 -12.97505 -12.80238 -12.74610 -12.71006 -12.48766 -12.33617 -12.21137 -12.00560 -11.85849 -11.29606 -11.04715 -10.71082 -10.53527 -10.27118 -10.02119 -9.57982 -8.70585 -7.90410 -5.39314 -0.33909 0.07405 1.46596 1.48966 1.57597 1.74713 2.11281 2.48271 2.61969 3.09560 3.15243 3.26822 3.56638 3.62142 3.67176 3.85774 3.88738 4.02859 4.03787 4.20146 4.22031 4.36130 4.51172 4.55328 4.66034 4.73756 4.84488 4.86276 4.89548 4.93059 4.94002 5.02646 5.08617 5.09838 5.26234 5.39502 5.46726 5.56473 5.61673 5.68527 5.78813 6.34711 6.46801 6.86505 7.10772 7.13997 7.78755 8.30595 9.15783 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.003897 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.890364 B = 7183.646654 C = 7872.794892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.042 4.042 3 C -0.091 4.091 4 C -0.113 4.113 5 C 0.069 3.931 6 F -0.145 7.145 7 C -0.125 4.125 8 C -0.127 4.127 9 C 0.553 3.447 10 O -0.558 6.558 11 N -0.699 5.699 12 C 0.168 3.832 13 H 0.081 0.919 14 C -0.139 4.139 15 C 0.185 3.815 16 N -0.601 5.601 17 C -0.266 4.266 18 H 0.072 0.928 19 C -0.045 4.045 20 N -0.933 5.933 21 Si 0.967 3.033 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.268 1.268 25 C 0.117 3.883 26 C 0.095 3.905 27 H 0.074 0.926 28 O -0.571 6.571 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.179 0.821 33 H 0.172 0.828 34 H 0.130 0.870 35 H 0.402 0.598 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.000 1.000 40 H 0.250 0.750 41 H 0.019 0.981 42 H 0.070 0.930 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 13.245 -10.755 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.043 4.043 3 C -0.109 4.109 4 C -0.132 4.132 5 C 0.050 3.950 6 F -0.124 7.124 7 C -0.144 4.144 8 C -0.130 4.130 9 C 0.342 3.658 10 O -0.439 6.439 11 N -0.349 5.349 12 C 0.064 3.936 13 H 0.099 0.901 14 C -0.179 4.179 15 C 0.059 3.941 16 N -0.326 5.326 17 C -0.396 4.396 18 H 0.090 0.910 19 C -0.241 4.241 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.193 1.193 25 C -0.009 4.009 26 C 0.034 3.966 27 H 0.092 0.908 28 O -0.378 6.378 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.196 0.804 33 H 0.189 0.811 34 H 0.148 0.852 35 H 0.239 0.761 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.018 0.982 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.089 0.911 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.274 13.713 -10.340 17.966 hybrid contribution 1.660 -1.589 0.768 2.423 sum -3.614 12.124 -9.572 15.864 Atomic orbital electron populations 1.21016 0.89041 1.03832 1.03205 1.20394 0.97898 0.91420 0.94621 1.21305 0.92859 0.98440 0.98293 1.21698 0.95238 0.97436 0.98783 1.17713 0.76943 0.94885 1.05461 1.91504 1.29213 1.97426 1.94213 1.21312 0.93891 0.98266 1.00967 1.19638 0.92579 0.93769 1.07014 1.18441 0.87003 0.84199 0.76164 1.90675 1.14311 1.87527 1.51398 1.45898 1.11190 1.05336 1.72501 1.20763 0.95404 0.82233 0.95237 0.90087 1.22389 0.99276 1.00978 0.95304 1.20485 0.87431 0.91443 0.94752 1.44141 1.55068 1.28233 1.05119 1.19513 1.34377 0.92073 0.93626 0.90995 1.25825 0.99761 0.99286 0.99235 1.70164 1.52915 1.25523 1.09282 0.85295 0.77862 0.79997 0.77372 1.21152 1.22243 1.19264 1.21680 0.94829 0.98893 0.85485 1.22358 0.96539 0.96125 0.81583 0.90822 1.86458 1.77922 1.52260 1.21180 0.91185 0.89143 0.90780 0.80386 0.81065 0.85201 0.76099 0.92166 0.90882 0.92709 0.98223 0.94129 0.96275 0.91139 0.75461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 8.73 71.24 0.62 -1.91 16 2 C -0.04 -0.99 5.91 -19.61 -0.12 -1.11 16 3 C -0.09 -1.52 9.66 22.22 0.21 -1.31 16 4 C -0.11 -2.00 10.02 22.37 0.22 -1.77 16 5 C 0.07 1.69 7.29 22.34 0.16 1.85 16 6 F -0.14 -3.82 17.26 44.97 0.78 -3.04 16 7 C -0.12 -3.47 9.50 22.57 0.21 -3.26 16 8 C -0.13 -3.68 5.87 -20.09 -0.12 -3.80 16 9 C 0.55 18.89 7.67 86.79 0.67 19.55 16 10 O -0.56 -20.86 13.00 -3.86 -0.05 -20.91 16 11 N -0.70 -23.82 4.10 -445.28 -1.83 -25.65 16 12 C 0.17 5.88 2.47 45.02 0.11 5.99 16 13 H 0.08 2.88 7.58 -2.39 -0.02 2.86 16 14 C -0.14 -5.44 5.77 30.67 0.18 -5.27 16 15 C 0.18 8.75 5.03 86.36 0.43 9.18 16 16 N -0.60 -28.36 2.99 -699.09 -2.09 -30.45 16 17 C -0.27 -13.88 9.58 84.03 0.81 -13.08 16 18 H 0.07 3.60 7.87 -2.91 -0.02 3.57 16 19 C -0.05 -2.45 4.96 84.86 0.42 -2.02 16 20 N -0.93 -54.10 11.14 21.65 0.24 -53.86 16 21 Si 0.97 43.61 29.58 68.60 2.03 45.64 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 C 0.12 4.40 5.85 86.36 0.50 4.90 16 26 C 0.10 3.03 3.36 30.67 0.10 3.13 16 27 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 28 O -0.57 -15.55 13.21 -148.98 -1.97 -17.52 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.34 8.04 -2.39 -0.02 1.32 16 31 H 0.07 2.04 5.85 -2.39 -0.01 2.02 16 32 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.13 3.74 6.45 -2.91 -0.02 3.72 16 35 H 0.40 13.49 4.94 -92.71 -0.46 13.04 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.05 2.99 6.07 -2.39 -0.01 2.97 16 39 H 0.00 -0.02 7.74 -2.38 -0.02 -0.03 16 40 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.02 0.74 6.64 -2.39 -0.02 0.72 16 42 H 0.07 2.48 7.93 -2.39 -0.02 2.46 16 43 H 0.40 7.17 9.08 -74.06 -0.67 6.50 16 Total: -1.00 -66.91 349.47 1.47 -65.44 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.07 Total: 29.26 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 4.43 Total: 11.09 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -3.68 Total: -109.96 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -2.02 Total: -38.43 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -66.91 1.47 -65.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090456694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.343 kcal (2) G-P(sol) polarization free energy of solvation -66.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds