Wall clock time and date at job start Fri Apr 10 2020 18:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37992 * 120.04894 * 2 1 4 4 C 1.38298 * 120.17117 * 180.25508 * 3 2 1 5 5 C 1.38591 * 120.26865 * 359.74482 * 4 3 2 6 6 F 1.35109 * 119.95406 * 179.97438 * 5 4 3 7 7 C 1.38171 * 120.09263 * 359.97438 * 5 4 3 8 8 C 1.39552 * 120.04546 * 179.74425 * 2 1 3 9 9 C 1.47849 * 120.13462 * 0.02794 * 8 2 1 10 10 O 1.21552 * 119.99892 * 352.53005 * 9 8 2 11 11 N 1.34776 * 120.00220 * 172.53496 * 9 8 2 12 12 C 1.46504 * 119.99735 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.46071 * 324.97098 * 12 11 9 14 14 C 1.53032 * 109.44562 * 84.94089 * 12 11 9 15 15 C 1.52761 * 109.38253 * 181.24925 * 14 12 11 16 16 N 1.46925 * 109.00987 * 305.58683 * 15 14 12 17 17 C 1.36938 * 120.63394 * 233.57935 * 16 15 14 18 18 H 1.08001 * 119.99324 * 33.04127 * 17 16 15 19 19 C 1.38808 * 120.00259 * 213.04126 * 17 16 15 20 20 N 1.31620 * 120.00201 * 197.57792 * 19 17 16 21 21 Si 1.86801 * 119.99969 * 17.57674 * 19 17 16 22 22 H 1.48503 * 109.47352 * 272.75019 * 21 19 17 23 23 H 1.48496 * 109.47216 * 32.75077 * 21 19 17 24 24 H 1.48497 * 109.47209 * 152.75353 * 21 19 17 25 25 C 1.46929 * 118.73726 * 53.30867 * 16 15 14 26 26 C 1.53045 * 109.45542 * 205.00036 * 12 11 9 27 27 H 1.09001 * 109.49780 * 58.68282 * 26 12 11 28 28 O 1.42897 * 109.49950 * 298.58039 * 26 12 11 29 29 H 1.09002 * 109.46737 * 262.39666 * 1 2 3 30 30 H 1.08998 * 109.46626 * 22.39456 * 1 2 3 31 31 H 1.08999 * 109.47075 * 142.39438 * 1 2 3 32 32 H 1.07997 * 119.91669 * 0.02562 * 3 2 1 33 33 H 1.08005 * 119.86651 * 179.76319 * 4 3 2 34 34 H 1.08005 * 120.08488 * 180.02562 * 7 5 4 35 35 H 0.96991 * 119.99817 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.49993 * 301.32360 * 14 12 11 37 37 H 1.09010 * 109.50246 * 61.39530 * 14 12 11 38 38 H 1.09000 * 109.51262 * 185.70257 * 15 14 12 39 39 H 1.09006 * 109.43247 * 65.42442 * 15 14 12 40 40 H 0.96995 * 119.99918 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.58585 * 66.42983 * 25 16 15 42 42 H 1.08994 * 109.58688 * 186.71120 * 25 16 15 43 43 H 0.96699 * 114.00268 * 180.16810 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1945 0.0000 4 6 3.5810 1.1974 -0.0053 5 6 4.2821 0.0019 -0.0054 6 9 5.6332 0.0122 -0.0111 7 6 3.6014 -1.2004 0.0005 8 6 2.2058 -1.2080 0.0054 9 6 1.4705 -2.4907 0.0105 10 8 0.2627 -2.4984 0.1469 11 7 2.1395 -3.6515 -0.1360 12 6 1.4110 -4.9225 -0.1303 13 1 0.5729 -4.8577 0.5636 14 6 0.8862 -5.2152 -1.5378 15 6 0.1003 -6.5251 -1.5236 16 7 0.9482 -7.5858 -0.9628 17 6 1.1528 -8.7523 -1.6502 18 1 1.1844 -8.7444 -2.7298 19 6 1.3194 -9.9449 -0.9597 20 7 1.8503 -10.9867 -1.5640 21 14 0.7900 -10.0713 0.8272 22 1 1.9022 -9.6277 1.7056 23 1 -0.3954 -9.2064 1.0547 24 1 0.4425 -11.4803 1.1421 25 6 1.5775 -7.3688 0.3471 26 6 2.3512 -6.0471 0.3095 27 1 2.7429 -5.8264 1.3025 28 8 3.4332 -6.1542 -0.6177 29 1 -0.3633 -0.1360 1.0187 30 1 -0.3632 0.9502 -0.3915 31 1 -0.3633 -0.8141 -0.6271 32 1 1.6575 2.1294 0.0004 33 1 4.1168 2.1352 -0.0092 34 1 4.1479 -2.1320 0.0009 35 1 3.1033 -3.6454 -0.2443 36 1 0.2350 -4.4024 -1.8596 37 1 1.7253 -5.3042 -2.2278 38 1 -0.1881 -6.7877 -2.5414 39 1 -0.7915 -6.4064 -0.9081 40 1 1.9671 -11.8199 -1.0814 41 1 0.8086 -7.3202 1.1183 42 1 2.2615 -8.1891 0.5643 43 1 4.0686 -6.8506 -0.4021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090456695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:27 Heat of formation + Delta-G solvation = -76.756345 kcal Electronic energy + Delta-G solvation = -27603.200044 eV Core-core repulsion = 23563.609651 eV Total energy + Delta-G solvation = -4039.590393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.18716 -40.61532 -39.02701 -37.86406 -35.04696 -34.70797 -32.65822 -32.34333 -31.59977 -30.03317 -29.32467 -27.03385 -25.31032 -24.12521 -22.97321 -22.24645 -21.49534 -20.57166 -19.71829 -18.35162 -17.35267 -17.09699 -16.32076 -16.01722 -15.96224 -15.90908 -15.63843 -15.14573 -14.98995 -14.36666 -14.29169 -14.15235 -13.84616 -13.71432 -13.63594 -13.19620 -12.74036 -12.50505 -12.43045 -12.21539 -12.10840 -11.98537 -11.80121 -11.67695 -11.48060 -11.00639 -10.70780 -10.51997 -10.33241 -10.12666 -9.71848 -9.58629 -9.52396 -9.43390 -8.96962 -8.76163 -8.64144 -6.93074 -5.99733 -3.40700 0.41424 0.78486 2.61382 3.08897 3.22584 3.42848 3.43873 3.46242 3.85202 4.27574 4.38331 4.46194 4.56045 4.57467 4.72946 4.86796 4.94557 5.09080 5.24197 5.27722 5.32252 5.45248 5.54033 5.59634 5.61122 5.64325 5.69857 5.74936 5.93822 5.98207 6.04693 6.21027 6.24540 6.28853 6.37311 6.45581 6.47423 6.62532 6.68703 6.94149 7.53021 7.93387 8.07003 8.18085 8.32038 8.89762 9.66098 10.05761 11.16411 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.003139 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.868836 B = 8918.046800 C = 9558.697894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.033 4.033 3 C -0.103 4.103 4 C -0.127 4.127 5 C 0.084 3.916 6 F -0.138 7.138 7 C -0.117 4.117 8 C -0.107 4.107 9 C 0.554 3.446 10 O -0.529 6.529 11 N -0.712 5.712 12 C 0.162 3.838 13 H 0.094 0.906 14 C -0.138 4.138 15 C 0.151 3.849 16 N -0.596 5.596 17 C -0.255 4.255 18 H 0.084 0.916 19 C 0.026 3.974 20 N -0.909 5.909 21 Si 0.883 3.117 22 H -0.288 1.288 23 H -0.271 1.271 24 H -0.302 1.302 25 C 0.099 3.901 26 C 0.082 3.918 27 H 0.048 0.952 28 O -0.554 6.554 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.402 0.598 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.024 0.976 40 H 0.263 0.737 41 H 0.032 0.968 42 H 0.081 0.919 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 23.682 5.177 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.034 4.034 3 C -0.121 4.121 4 C -0.146 4.146 5 C 0.064 3.936 6 F -0.116 7.116 7 C -0.136 4.136 8 C -0.110 4.110 9 C 0.341 3.659 10 O -0.407 6.407 11 N -0.362 5.362 12 C 0.058 3.942 13 H 0.112 0.888 14 C -0.178 4.178 15 C 0.024 3.976 16 N -0.319 5.319 17 C -0.383 4.383 18 H 0.101 0.899 19 C -0.173 4.173 20 N -0.551 5.551 21 Si 0.713 3.287 22 H -0.216 1.216 23 H -0.196 1.196 24 H -0.230 1.230 25 C -0.028 4.028 26 C 0.020 3.980 27 H 0.066 0.934 28 O -0.360 6.360 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.238 0.762 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.099 0.901 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.069 23.931 4.971 24.529 hybrid contribution 1.018 -0.684 1.318 1.800 sum 3.088 23.247 6.289 24.280 Atomic orbital electron populations 1.21062 0.89317 1.03077 1.04022 1.20160 0.97494 0.91194 0.94603 1.20937 0.92968 0.98070 1.00152 1.21331 0.95003 0.97287 1.00976 1.17495 0.77106 0.94299 1.04663 1.91528 1.28642 1.97379 1.94063 1.21328 0.93899 0.97778 1.00606 1.19735 0.92394 0.94080 1.04834 1.18113 0.87158 0.83509 0.77129 1.90745 1.13453 1.86934 1.49600 1.46124 1.11542 1.05781 1.72761 1.21024 0.93798 0.80128 0.99231 0.88801 1.22243 1.00904 0.98825 0.95875 1.20855 0.91532 0.86764 0.98417 1.44180 1.52776 1.16200 1.18738 1.18882 1.44635 0.82744 0.92082 0.89888 1.25418 0.99061 0.95241 0.97626 1.69809 1.45009 1.03057 1.37249 0.86960 0.79455 0.76114 0.86188 1.21612 1.19630 1.22951 1.22072 0.96020 0.95294 0.89425 1.22563 0.88277 0.96271 0.90895 0.93390 1.86380 1.37511 1.58927 1.53154 0.90360 0.92293 0.88485 0.84292 0.84312 0.84178 0.76222 0.92313 0.90751 0.91423 0.95776 0.92711 0.95026 0.90109 0.77340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.66 36.01 0.31 -0.86 16 2 C -0.03 -0.34 5.91 -104.22 -0.62 -0.96 16 3 C -0.10 -0.82 9.66 -39.65 -0.38 -1.20 16 4 C -0.13 -1.02 10.02 -39.43 -0.40 -1.41 16 5 C 0.08 0.82 7.29 -39.48 -0.29 0.53 16 6 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 7 C -0.12 -1.19 9.50 -39.11 -0.37 -1.56 16 8 C -0.11 -1.23 5.87 -104.98 -0.62 -1.85 16 9 C 0.55 7.65 7.65 -12.33 -0.09 7.56 16 10 O -0.53 -8.52 13.06 5.32 0.07 -8.45 16 11 N -0.71 -9.67 5.00 -54.71 -0.27 -9.94 16 12 C 0.16 2.59 2.20 -67.89 -0.15 2.44 16 13 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 14 C -0.14 -2.41 5.49 -26.84 -0.15 -2.56 16 15 C 0.15 3.01 6.49 -3.93 -0.03 2.98 16 16 N -0.60 -13.70 2.63 -172.58 -0.45 -14.15 16 17 C -0.25 -6.95 9.99 -15.06 -0.15 -7.10 16 18 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 19 C 0.03 0.72 5.24 -17.43 -0.09 0.63 16 20 N -0.91 -27.24 13.97 55.49 0.78 -26.46 16 21 Si 0.88 21.68 24.41 -169.99 -4.15 17.53 16 22 H -0.29 -6.67 6.50 56.52 0.37 -6.30 16 23 H -0.27 -6.64 6.96 56.52 0.39 -6.24 16 24 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 25 C 0.10 2.01 3.86 -3.71 -0.01 2.00 16 26 C 0.08 1.34 3.38 -26.61 -0.09 1.25 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 O -0.55 -9.10 12.09 -35.23 -0.43 -9.52 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.44 8.03 -51.93 -0.42 0.02 16 31 H 0.10 1.18 5.99 -51.93 -0.31 0.87 16 32 H 0.14 0.72 8.05 -52.49 -0.42 0.30 16 33 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.14 1.26 6.47 -52.48 -0.34 0.92 16 35 H 0.40 4.84 6.34 -40.82 -0.26 4.58 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.40 7.61 -51.92 -0.40 1.00 16 38 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.03 0.65 7.16 -51.93 -0.37 0.27 16 42 H 0.08 1.76 4.93 -51.93 -0.26 1.50 16 43 H 0.38 5.40 9.08 45.56 0.41 5.81 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -31.61 346.38 -7.20 -38.81 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.88 Total: 8.47 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -3.12 Total: -0.10 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.05 Total: -50.55 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.36 Total: -17.97 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.15 Total: 17.53 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.61 -7.20 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090456695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.949 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds