Wall clock time and date at job start Fri Apr 10 2020 18:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38461 * 119.83094 * 2 1 4 4 C 1.37851 * 120.22086 * 180.02562 * 3 2 1 5 5 C 1.39662 * 119.87788 * 0.02562 * 4 3 2 6 6 C 1.47688 * 120.16721 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00266 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00189 * 0.02562 * 6 5 4 9 9 C 1.46497 * 120.00361 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46396 * 35.02695 * 9 8 6 11 11 C 1.53044 * 109.46189 * 275.06459 * 9 8 6 12 12 C 1.52755 * 109.38132 * 301.22024 * 11 9 8 13 13 N 1.46923 * 109.00900 * 305.58408 * 12 11 9 14 14 C 1.36943 * 120.62930 * 233.58508 * 13 12 11 15 15 H 1.08000 * 119.99888 * 152.17192 * 14 13 12 16 16 C 1.38811 * 119.99955 * 332.17173 * 14 13 12 17 17 N 1.31614 * 120.00254 * 342.76805 * 16 14 13 18 18 Si 1.86801 * 119.99678 * 162.77313 * 16 14 13 19 19 H 1.48501 * 109.46669 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.46948 * 299.99298 * 18 16 14 21 21 H 1.48498 * 109.47140 * 59.99949 * 18 16 14 22 22 C 1.46927 * 118.73893 * 53.31139 * 13 12 11 23 23 C 1.53046 * 109.46379 * 154.99790 * 9 8 6 24 24 H 1.08999 * 109.49861 * 178.60651 * 23 9 8 25 25 O 1.42898 * 109.49343 * 298.70602 * 23 9 8 26 26 C 1.39827 * 119.66867 * 0.25901 * 5 4 3 27 27 F 1.35091 * 120.11137 * 179.72334 * 26 5 4 28 28 C 1.38203 * 119.83077 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.47203 * 89.99770 * 1 2 3 30 30 H 1.09005 * 109.47257 * 209.99834 * 1 2 3 31 31 H 1.08998 * 109.47222 * 330.00171 * 1 2 3 32 32 H 1.08005 * 119.88812 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.06458 * 180.02562 * 4 3 2 34 34 H 0.97006 * 119.99741 * 359.97438 * 8 6 5 35 35 H 1.09007 * 109.49256 * 61.29397 * 11 9 8 36 36 H 1.09002 * 109.49531 * 181.39096 * 11 9 8 37 37 H 1.09005 * 109.50719 * 185.70148 * 12 11 9 38 38 H 1.09006 * 109.43430 * 65.42411 * 12 11 9 39 39 H 0.96995 * 120.00322 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.58525 * 66.43417 * 22 13 12 41 41 H 1.08995 * 109.58430 * 186.71314 * 22 13 12 42 42 H 0.96702 * 113.99942 * 179.83960 * 25 23 9 43 43 H 1.07993 * 119.94476 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.2011 0.0000 4 6 3.5742 1.2105 -0.0005 5 6 4.2781 0.0043 -0.0016 6 6 5.7550 0.0069 -0.0028 7 8 6.3647 -1.0448 -0.0042 8 7 6.4269 1.1753 -0.0022 9 6 7.8918 1.1779 -0.0028 10 1 8.2563 0.3373 -0.5934 11 6 8.4025 1.0504 1.4343 12 6 7.8655 2.2123 2.2680 13 7 8.2210 3.4773 1.6109 14 6 8.8839 4.4586 2.2987 15 1 9.5229 5.1507 1.7705 16 6 8.7346 4.5635 3.6748 17 7 7.7255 3.9683 4.2746 18 14 9.9658 5.5497 4.6753 19 1 9.5850 5.5070 6.1100 20 1 11.3213 4.9678 4.5049 21 1 9.9693 6.9587 4.2063 22 6 7.8572 3.6673 0.2001 23 6 8.3992 2.4870 -0.6120 24 1 9.4889 2.5001 -0.5901 25 8 7.9474 2.5906 -1.9637 26 6 3.5777 -1.2059 -0.0076 27 9 4.2495 -2.3778 -0.0144 28 6 2.1944 -1.1989 -0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6511 2.1338 0.0004 33 1 4.1089 2.1489 -0.0001 34 1 5.9404 2.0145 -0.0015 35 1 8.0602 0.1070 1.8596 36 1 9.4922 1.0772 1.4368 37 1 8.3078 2.1807 3.2638 38 1 6.7810 2.1326 2.3450 39 1 7.6210 4.0419 5.2361 40 1 6.7721 3.7088 0.1050 41 1 8.2919 4.5968 -0.1673 42 1 8.2305 3.3991 -2.4122 43 1 1.6508 -2.1320 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090592710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:00 Heat of formation + Delta-G solvation = -83.127608 kcal Electronic energy + Delta-G solvation = -27895.365750 eV Core-core repulsion = 23855.499079 eV Total energy + Delta-G solvation = -4039.866671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.78659 -40.15346 -38.95040 -37.67960 -35.46295 -34.10007 -33.12415 -31.66035 -30.74457 -30.14996 -28.70871 -27.53804 -25.33520 -23.00108 -22.90396 -22.25001 -21.81575 -20.63470 -18.73749 -18.11589 -17.12155 -16.78288 -16.61260 -16.37877 -15.69407 -15.33990 -14.94558 -14.92049 -14.44321 -14.39786 -14.21237 -13.85561 -13.80841 -13.47503 -13.41738 -13.25498 -12.72178 -12.40198 -12.34034 -12.07678 -11.95765 -11.79774 -11.68726 -11.41885 -11.19993 -10.89775 -10.67089 -10.43502 -10.22841 -9.97685 -9.86575 -9.58030 -9.45444 -9.13568 -8.81633 -8.58269 -8.51462 -6.80774 -5.89239 -3.33670 0.64440 1.05313 2.90734 3.32363 3.39249 3.39652 3.40847 3.72997 4.09390 4.34077 4.47133 4.48739 4.54933 4.81813 5.01534 5.02552 5.22701 5.26173 5.28796 5.29635 5.41933 5.44676 5.56204 5.67011 5.74315 5.86111 5.89918 5.96537 6.02274 6.04969 6.22193 6.24825 6.41841 6.53403 6.61297 6.67414 6.68774 6.92336 7.25694 7.56842 7.68962 7.83235 7.89700 8.33021 8.51331 9.08679 9.71067 10.26209 11.18884 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.003626 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.633496 B = 7719.622196 C = 8359.879847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.037 4.037 3 C -0.140 4.140 4 C -0.049 4.049 5 C -0.171 4.171 6 C 0.556 3.444 7 O -0.536 6.536 8 N -0.697 5.697 9 C 0.166 3.834 10 H 0.080 0.920 11 C -0.154 4.154 12 C 0.171 3.829 13 N -0.586 5.586 14 C -0.262 4.262 15 H 0.066 0.934 16 C 0.008 3.992 17 N -0.899 5.899 18 Si 0.904 3.096 19 H -0.290 1.290 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.119 3.881 23 C 0.075 3.925 24 H 0.068 0.932 25 O -0.571 6.571 26 C 0.161 3.839 27 F -0.116 7.116 28 C -0.170 4.170 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.400 0.600 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.256 0.744 40 H 0.020 0.980 41 H 0.060 0.940 42 H 0.374 0.626 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -4.950 -10.031 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.038 4.038 3 C -0.158 4.158 4 C -0.068 4.068 5 C -0.175 4.175 6 C 0.343 3.657 7 O -0.414 6.414 8 N -0.349 5.349 9 C 0.062 3.938 10 H 0.098 0.902 11 C -0.194 4.194 12 C 0.046 3.954 13 N -0.310 5.310 14 C -0.391 4.391 15 H 0.084 0.916 16 C -0.192 4.192 17 N -0.542 5.542 18 Si 0.734 3.266 19 H -0.216 1.216 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.009 4.009 23 C 0.014 3.986 24 H 0.086 0.914 25 O -0.375 6.375 26 C 0.141 3.859 27 F -0.094 7.094 28 C -0.189 4.189 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.220 0.780 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.610 -6.300 -9.696 16.386 hybrid contribution 0.791 1.314 0.530 1.623 sum -10.819 -4.985 -9.166 15.030 Atomic orbital electron populations 1.20873 0.90225 1.03462 1.02872 1.19917 0.96546 0.92161 0.95143 1.21037 0.93781 0.98084 1.02893 1.21280 0.94404 0.96801 0.94272 1.20153 0.94384 0.93236 1.09755 1.17916 0.86308 0.84386 0.77105 1.90796 1.69419 1.31087 1.50144 1.45809 1.07497 1.08027 1.73556 1.20859 0.78938 0.96880 0.97129 0.90164 1.22530 1.01093 1.01220 0.94557 1.20707 0.96814 0.81619 0.96261 1.43987 1.67005 1.14299 1.05754 1.19112 1.20017 1.09921 0.90049 0.91613 1.25039 0.97013 0.99276 0.97859 1.70017 1.27903 1.46769 1.09504 0.86353 0.81225 0.79856 0.79209 1.21556 1.20913 1.20839 1.21531 0.96818 0.95309 0.87202 1.22755 0.98103 0.96533 0.81169 0.91443 1.86491 1.79287 1.45764 1.25942 1.17673 0.89618 0.80864 0.97785 1.91585 1.80466 1.44607 1.92731 1.20973 0.91720 0.99589 1.06639 0.90476 0.91059 0.90792 0.84693 0.84489 0.76256 0.91729 0.91383 0.89191 0.96098 0.93406 0.96189 0.92179 0.77990 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.00 36.00 0.36 -0.38 16 2 C -0.04 -0.36 5.88 -104.56 -0.62 -0.98 16 3 C -0.14 -1.43 9.67 -39.64 -0.38 -1.81 16 4 C -0.05 -0.61 9.54 -39.19 -0.37 -0.99 16 5 C -0.17 -2.65 5.88 -104.91 -0.62 -3.26 16 6 C 0.56 10.24 7.73 -12.40 -0.10 10.15 16 7 O -0.54 -11.54 15.00 5.31 0.08 -11.46 16 8 N -0.70 -12.16 4.11 -54.76 -0.23 -12.38 16 9 C 0.17 3.05 2.47 -67.89 -0.17 2.88 16 10 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 11 C -0.15 -3.06 5.75 -26.83 -0.15 -3.22 16 12 C 0.17 3.97 5.03 -3.94 -0.02 3.95 16 13 N -0.59 -13.71 3.00 -172.58 -0.52 -14.22 16 14 C -0.26 -6.80 9.58 -15.06 -0.14 -6.94 16 15 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 16 C 0.01 0.20 4.91 -17.43 -0.09 0.12 16 17 N -0.90 -25.13 11.19 55.49 0.62 -24.51 16 18 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.12 2.25 5.85 -3.71 -0.02 2.23 16 23 C 0.08 1.27 3.36 -26.61 -0.09 1.18 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 O -0.57 -8.45 13.21 -35.23 -0.47 -8.92 16 26 C 0.16 2.39 7.29 -38.95 -0.28 2.10 16 27 F -0.12 -1.97 15.55 2.25 0.04 -1.93 16 28 C -0.17 -1.91 9.66 -39.56 -0.38 -2.30 16 29 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.14 1.58 6.41 -52.49 -0.34 1.24 16 34 H 0.40 6.51 4.90 -40.82 -0.20 6.31 16 35 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 38 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.02 0.38 6.64 -51.93 -0.34 0.03 16 41 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 42 H 0.37 3.90 9.08 45.56 0.41 4.32 16 43 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -32.22 352.94 -8.17 -40.39 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.91 Total: 9.08 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -3.07 Total: 2.72 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.12 Total: -51.12 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.39 Total: -20.38 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.22 -8.17 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090592710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.735 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds