Wall clock time and date at job start Fri Apr 10 2020 18:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38446 * 119.83393 * 2 1 4 4 C 1.37860 * 120.22125 * 179.74412 * 3 2 1 5 5 C 1.39663 * 119.87271 * 0.55036 * 4 3 2 6 6 C 1.47694 * 120.16315 * 179.72305 * 5 4 3 7 7 O 1.21572 * 119.99933 * 179.73234 * 6 5 4 8 8 N 1.34776 * 120.00193 * 359.72548 * 6 5 4 9 9 C 1.46501 * 120.00264 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.45737 * 325.03166 * 9 8 6 11 11 C 1.53033 * 109.45995 * 84.99972 * 9 8 6 12 12 C 1.53196 * 109.31405 * 58.65577 * 11 9 8 13 13 N 1.46930 * 108.77199 * 54.63584 * 12 11 9 14 14 C 1.36933 * 120.63005 * 126.11515 * 13 12 11 15 15 H 1.08001 * 120.00321 * 331.87101 * 14 13 12 16 16 C 1.38815 * 119.99826 * 151.86766 * 14 13 12 17 17 N 1.31621 * 119.99984 * 343.17890 * 16 14 13 18 18 Si 1.86800 * 120.00122 * 163.17569 * 16 14 13 19 19 H 1.48504 * 109.46788 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47041 * 119.99977 * 18 16 14 21 21 H 1.48497 * 109.47258 * 240.00106 * 18 16 14 22 22 C 1.46923 * 118.73796 * 306.39091 * 13 12 11 23 23 C 1.53031 * 109.46086 * 205.07144 * 9 8 6 24 24 H 1.09005 * 109.49738 * 181.36086 * 23 9 8 25 25 O 1.42903 * 109.50230 * 61.29560 * 23 9 8 26 26 C 1.39821 * 119.66925 * 359.45173 * 5 4 3 27 27 F 1.35096 * 120.11062 * 180.29270 * 26 5 4 28 28 C 1.38213 * 119.82301 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47124 * 269.97978 * 1 2 3 30 30 H 1.08998 * 109.46941 * 29.97907 * 1 2 3 31 31 H 1.08995 * 109.47226 * 149.97743 * 1 2 3 32 32 H 1.08003 * 119.89061 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.06520 * 180.30096 * 4 3 2 34 34 H 0.97004 * 119.99784 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.50103 * 298.70653 * 11 9 8 36 36 H 1.09001 * 109.52989 * 178.62461 * 11 9 8 37 37 H 1.08998 * 109.58579 * 294.85221 * 12 11 9 38 38 H 1.08997 * 109.58701 * 174.42032 * 12 11 9 39 39 H 0.97002 * 120.00123 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.59186 * 173.39498 * 22 13 12 41 41 H 1.08997 * 109.58930 * 293.82211 * 22 13 12 42 42 H 0.96697 * 114.00073 * 179.97438 * 25 23 9 43 43 H 1.07991 * 119.94402 * 359.95620 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5744 1.2103 0.0053 5 6 4.2782 0.0040 -0.0009 6 6 5.7551 0.0066 -0.0014 7 8 6.3648 -1.0453 -0.0019 8 7 6.4270 1.1749 -0.0015 9 6 7.8920 1.1774 -0.0026 10 1 8.2570 0.3356 0.5858 11 6 8.4010 1.0531 -1.4404 12 6 7.8581 2.2190 -2.2727 13 7 8.2194 3.4805 -1.6116 14 6 8.8862 4.4610 -2.2965 15 1 9.5364 4.1992 -3.1181 16 6 8.7264 5.7916 -1.9346 17 7 7.7109 6.1505 -1.1780 18 14 9.9525 7.0729 -2.5215 19 1 10.9937 6.4172 -3.3529 20 1 9.2470 8.0989 -3.3308 21 1 10.5910 7.7211 -1.3480 22 6 7.8572 3.6673 -0.2000 23 6 8.4001 2.4850 0.6090 24 1 9.4898 2.4980 0.5864 25 8 7.9498 2.5857 1.9615 26 6 3.5776 -1.2060 -0.0009 27 9 4.2495 -2.3781 -0.0009 28 6 2.1944 -1.1991 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6513 2.1337 0.0004 33 1 4.1091 2.1486 0.0102 34 1 5.9406 2.0141 -0.0008 35 1 8.0582 0.1106 -1.8676 36 1 9.4907 1.0794 -1.4448 37 1 6.7732 2.1422 -2.3452 38 1 8.2960 2.1909 -3.2704 39 1 7.5990 7.0803 -0.9254 40 1 8.2945 4.5946 0.1699 41 1 6.7723 3.7085 -0.1036 42 1 8.2359 3.3920 2.4122 43 1 1.6507 -2.1321 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090592717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:02 Heat of formation + Delta-G solvation = -84.464620 kcal Electronic energy + Delta-G solvation = -27898.067587 eV Core-core repulsion = 23858.142938 eV Total energy + Delta-G solvation = -4039.924648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -48.81058 -40.16010 -38.93902 -37.64418 -35.31490 -34.14020 -33.17032 -31.84594 -30.74082 -29.70641 -28.93609 -27.57131 -25.35034 -23.01967 -22.93054 -22.24565 -21.77068 -20.62733 -18.74256 -18.10566 -17.01910 -16.78576 -16.59006 -16.45326 -15.71769 -15.38827 -14.95325 -14.89684 -14.48743 -14.38603 -14.05244 -13.86853 -13.73870 -13.48660 -13.43733 -13.33541 -12.75717 -12.40928 -12.30051 -12.04853 -11.88210 -11.82106 -11.67554 -11.43487 -11.10480 -11.03489 -10.87930 -10.44829 -10.23782 -10.03600 -9.74379 -9.56004 -9.35950 -9.15239 -8.84081 -8.66868 -8.53613 -6.81736 -5.93317 -3.36815 0.62525 1.03775 2.88545 3.28611 3.37730 3.39652 3.40201 3.70526 4.07574 4.36793 4.45950 4.51504 4.58748 4.81564 5.00778 5.01007 5.21229 5.23528 5.28218 5.36842 5.40535 5.45899 5.68007 5.73814 5.80570 5.85423 5.90301 5.91023 6.01034 6.01513 6.21013 6.23828 6.41824 6.44777 6.65983 6.69240 6.77799 6.92321 7.01471 7.35426 7.67880 7.83232 8.06924 8.30708 8.49328 9.05658 9.68245 10.24194 11.14983 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.003540 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.164728 B = 7906.815739 C = 8673.702073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.037 4.037 3 C -0.139 4.139 4 C -0.049 4.049 5 C -0.173 4.173 6 C 0.555 3.445 7 O -0.538 6.538 8 N -0.697 5.697 9 C 0.166 3.834 10 H 0.080 0.920 11 C -0.145 4.145 12 C 0.145 3.855 13 N -0.588 5.588 14 C -0.254 4.254 15 H 0.069 0.931 16 C 0.004 3.996 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.288 1.288 22 C 0.146 3.854 23 C 0.066 3.934 24 H 0.063 0.937 25 O -0.573 6.573 26 C 0.161 3.839 27 F -0.116 7.116 28 C -0.171 4.171 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.403 0.597 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.020 0.980 38 H 0.058 0.942 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.023 0.977 42 H 0.376 0.624 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.734 -9.040 4.241 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.037 4.037 3 C -0.158 4.158 4 C -0.068 4.068 5 C -0.177 4.177 6 C 0.342 3.658 7 O -0.416 6.416 8 N -0.349 5.349 9 C 0.061 3.939 10 H 0.098 0.902 11 C -0.185 4.185 12 C 0.019 3.981 13 N -0.312 5.312 14 C -0.384 4.384 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.547 5.547 18 Si 0.733 3.267 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.215 1.215 22 C 0.020 3.980 23 C 0.005 3.995 24 H 0.081 0.919 25 O -0.377 6.377 26 C 0.140 3.860 27 F -0.094 7.094 28 C -0.190 4.190 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.240 0.760 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.041 0.959 42 H 0.223 0.777 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.544 -10.228 4.137 15.968 hybrid contribution 0.773 1.565 -0.147 1.752 sum -10.771 -8.663 3.990 14.387 Atomic orbital electron populations 1.20876 0.90217 1.03433 1.02925 1.19928 0.96556 0.92158 0.95103 1.21055 0.93805 0.98112 1.02786 1.21330 0.94446 0.96888 0.94114 1.20157 0.94384 0.93222 1.09893 1.17942 0.86320 0.84404 0.77143 1.90793 1.69443 1.31107 1.50301 1.45875 1.07567 1.08130 1.73350 1.20836 0.78921 0.97598 0.96520 0.90176 1.22413 1.01205 1.00016 0.94914 1.20930 0.96557 0.85639 0.94972 1.43963 1.66920 1.14227 1.06082 1.19254 1.19057 0.85543 1.14514 0.91371 1.25057 0.97073 0.97183 1.00181 1.70015 1.27756 1.16513 1.40435 0.86211 0.80911 0.81498 0.78094 1.20178 1.21639 1.21510 1.21392 0.97011 0.95620 0.84018 1.22953 0.97951 0.96816 0.81750 0.91901 1.86421 1.79341 1.46133 1.25822 1.17671 0.89617 0.80847 0.97861 1.91585 1.80476 1.44614 1.92754 1.20971 0.91718 0.99577 1.06702 0.90440 0.90778 0.91081 0.84631 0.84311 0.75956 0.91637 0.91015 0.96188 0.92390 0.93575 0.88886 0.95913 0.77733 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.00 36.01 0.36 -0.37 16 2 C -0.04 -0.35 5.88 -104.55 -0.62 -0.97 16 3 C -0.14 -1.42 9.67 -39.64 -0.38 -1.80 16 4 C -0.05 -0.61 9.54 -39.19 -0.37 -0.99 16 5 C -0.17 -2.61 5.88 -104.91 -0.62 -3.23 16 6 C 0.56 10.01 7.73 -12.40 -0.10 9.91 16 7 O -0.54 -11.29 15.00 5.30 0.08 -11.21 16 8 N -0.70 -12.13 4.10 -54.77 -0.22 -12.36 16 9 C 0.17 3.03 2.47 -67.90 -0.17 2.86 16 10 H 0.08 1.54 7.57 -51.93 -0.39 1.15 16 11 C -0.15 -2.64 5.77 -26.61 -0.15 -2.80 16 12 C 0.15 2.95 6.26 -3.71 -0.02 2.93 16 13 N -0.59 -13.68 2.99 -172.32 -0.52 -14.20 16 14 C -0.25 -6.58 9.58 -15.06 -0.14 -6.73 16 15 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 16 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 17 N -0.90 -24.38 11.20 55.49 0.62 -23.76 16 18 Si 0.90 20.65 29.59 -169.99 -5.03 15.62 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.15 3.15 4.64 -3.71 -0.02 3.13 16 23 C 0.07 1.21 3.36 -26.61 -0.09 1.12 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 O -0.57 -9.68 13.21 -35.23 -0.47 -10.14 16 26 C 0.16 2.32 7.29 -38.96 -0.28 2.04 16 27 F -0.12 -1.92 15.55 2.25 0.04 -1.89 16 28 C -0.17 -1.87 9.66 -39.56 -0.38 -2.25 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.14 1.66 6.41 -52.49 -0.34 1.32 16 34 H 0.40 6.76 4.90 -40.82 -0.20 6.56 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 38 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.25 6.66 8.31 -40.82 -0.34 6.33 16 40 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16 41 H 0.02 0.51 6.64 -51.93 -0.34 0.16 16 42 H 0.38 5.03 9.08 45.56 0.41 5.45 16 43 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -31.28 352.99 -8.16 -39.44 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.91 Total: 10.30 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -3.07 Total: 2.87 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.12 Total: -50.32 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.39 Total: -21.35 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.28 -8.16 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090592717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.023 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds