Wall clock time and date at job start Fri Apr 10 2020 18:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38446 * 119.83393 * 2 1 4 4 C 1.37860 * 120.22125 * 179.74412 * 3 2 1 5 5 C 1.39663 * 119.87271 * 0.55036 * 4 3 2 6 6 C 1.47694 * 120.16315 * 179.72305 * 5 4 3 7 7 O 1.21572 * 119.99933 * 179.73234 * 6 5 4 8 8 N 1.34776 * 120.00193 * 359.72548 * 6 5 4 9 9 C 1.46501 * 120.00264 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.45737 * 325.03166 * 9 8 6 11 11 C 1.53033 * 109.45995 * 84.99972 * 9 8 6 12 12 C 1.53196 * 109.31405 * 58.65577 * 11 9 8 13 13 N 1.46930 * 108.77199 * 54.63584 * 12 11 9 14 14 C 1.36933 * 120.63005 * 126.11515 * 13 12 11 15 15 H 1.08001 * 120.00321 * 331.87101 * 14 13 12 16 16 C 1.38815 * 119.99826 * 151.86766 * 14 13 12 17 17 N 1.31621 * 119.99984 * 343.17890 * 16 14 13 18 18 Si 1.86800 * 120.00122 * 163.17569 * 16 14 13 19 19 H 1.48504 * 109.46788 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47041 * 119.99977 * 18 16 14 21 21 H 1.48497 * 109.47258 * 240.00106 * 18 16 14 22 22 C 1.46923 * 118.73796 * 306.39091 * 13 12 11 23 23 C 1.53031 * 109.46086 * 205.07144 * 9 8 6 24 24 H 1.09005 * 109.49738 * 181.36086 * 23 9 8 25 25 O 1.42903 * 109.50230 * 61.29560 * 23 9 8 26 26 C 1.39821 * 119.66925 * 359.45173 * 5 4 3 27 27 F 1.35096 * 120.11062 * 180.29270 * 26 5 4 28 28 C 1.38213 * 119.82301 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47124 * 269.97978 * 1 2 3 30 30 H 1.08998 * 109.46941 * 29.97907 * 1 2 3 31 31 H 1.08995 * 109.47226 * 149.97743 * 1 2 3 32 32 H 1.08003 * 119.89061 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.06520 * 180.30096 * 4 3 2 34 34 H 0.97004 * 119.99784 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.50103 * 298.70653 * 11 9 8 36 36 H 1.09001 * 109.52989 * 178.62461 * 11 9 8 37 37 H 1.08998 * 109.58579 * 294.85221 * 12 11 9 38 38 H 1.08997 * 109.58701 * 174.42032 * 12 11 9 39 39 H 0.97002 * 120.00123 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.59186 * 173.39498 * 22 13 12 41 41 H 1.08997 * 109.58930 * 293.82211 * 22 13 12 42 42 H 0.96697 * 114.00073 * 179.97438 * 25 23 9 43 43 H 1.07991 * 119.94402 * 359.95620 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5744 1.2103 0.0053 5 6 4.2782 0.0040 -0.0009 6 6 5.7551 0.0066 -0.0014 7 8 6.3648 -1.0453 -0.0019 8 7 6.4270 1.1749 -0.0015 9 6 7.8920 1.1774 -0.0026 10 1 8.2570 0.3356 0.5858 11 6 8.4010 1.0531 -1.4404 12 6 7.8581 2.2190 -2.2727 13 7 8.2194 3.4805 -1.6116 14 6 8.8862 4.4610 -2.2965 15 1 9.5364 4.1992 -3.1181 16 6 8.7264 5.7916 -1.9346 17 7 7.7109 6.1505 -1.1780 18 14 9.9525 7.0729 -2.5215 19 1 10.9937 6.4172 -3.3529 20 1 9.2470 8.0989 -3.3308 21 1 10.5910 7.7211 -1.3480 22 6 7.8572 3.6673 -0.2000 23 6 8.4001 2.4850 0.6090 24 1 9.4898 2.4980 0.5864 25 8 7.9498 2.5857 1.9615 26 6 3.5776 -1.2060 -0.0009 27 9 4.2495 -2.3781 -0.0009 28 6 2.1944 -1.1991 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6513 2.1337 0.0004 33 1 4.1091 2.1486 0.0102 34 1 5.9406 2.0141 -0.0008 35 1 8.0582 0.1106 -1.8676 36 1 9.4907 1.0794 -1.4448 37 1 6.7732 2.1422 -2.3452 38 1 8.2960 2.1909 -3.2704 39 1 7.5990 7.0803 -0.9254 40 1 8.2945 4.5946 0.1699 41 1 6.7723 3.7085 -0.1036 42 1 8.2359 3.3920 2.4122 43 1 1.6507 -2.1321 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090592717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:01 Heat of formation + Delta-G solvation = -105.303717 kcal Electronic energy + Delta-G solvation = -27898.971238 eV Core-core repulsion = 23858.142938 eV Total energy + Delta-G solvation = -4040.828299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.95007 -41.49138 -40.08189 -39.06780 -36.88094 -35.74399 -34.27701 -33.39184 -31.71101 -31.30429 -30.51786 -28.48113 -27.13346 -24.34613 -23.90458 -23.70129 -23.35070 -21.84240 -20.31388 -19.37328 -18.72283 -18.10674 -17.81974 -17.59920 -16.92615 -16.88304 -16.51812 -16.17954 -15.95667 -15.70044 -15.45073 -15.28043 -14.98815 -14.66303 -14.45536 -14.39544 -14.30688 -13.90277 -13.55413 -13.28583 -13.11328 -12.88849 -12.77067 -12.71711 -12.68713 -12.66023 -12.29693 -12.15011 -12.00659 -11.84013 -11.31408 -11.06234 -10.91399 -10.59677 -10.19664 -10.00046 -9.69633 -8.71278 -7.90326 -5.36239 -0.37611 0.12144 1.47090 1.51270 1.60086 1.73206 2.06737 2.49868 2.61792 3.10090 3.12262 3.26600 3.52657 3.61383 3.65152 3.85678 3.91984 4.09834 4.13057 4.19399 4.23454 4.33510 4.43250 4.60313 4.63046 4.67420 4.83655 4.88543 4.90925 4.96709 5.00686 5.05116 5.12253 5.13727 5.27201 5.28499 5.43047 5.46415 5.56856 5.65737 5.79118 6.34818 6.43937 6.81855 7.10390 7.12357 7.78684 8.31256 9.15705 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.003540 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.164728 B = 7906.815739 C = 8673.702073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.023 4.023 3 C -0.134 4.134 4 C -0.054 4.054 5 C -0.200 4.200 6 C 0.552 3.448 7 O -0.576 6.576 8 N -0.693 5.693 9 C 0.167 3.833 10 H 0.073 0.927 11 C -0.133 4.133 12 C 0.148 3.852 13 N -0.601 5.601 14 C -0.266 4.266 15 H 0.066 0.934 16 C -0.040 4.040 17 N -0.927 5.927 18 Si 0.963 3.037 19 H -0.271 1.271 20 H -0.293 1.293 21 H -0.288 1.288 22 C 0.158 3.842 23 C 0.084 3.916 24 H 0.065 0.935 25 O -0.574 6.574 26 C 0.134 3.866 27 F -0.137 7.137 28 C -0.165 4.165 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.166 0.834 33 H 0.139 0.861 34 H 0.406 0.594 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.017 0.983 38 H 0.057 0.943 39 H 0.252 0.748 40 H 0.068 0.932 41 H 0.013 0.987 42 H 0.392 0.608 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 -8.785 4.362 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.024 4.024 3 C -0.152 4.152 4 C -0.073 4.073 5 C -0.204 4.204 6 C 0.341 3.659 7 O -0.458 6.458 8 N -0.345 5.345 9 C 0.062 3.938 10 H 0.091 0.909 11 C -0.173 4.173 12 C 0.022 3.978 13 N -0.326 5.326 14 C -0.396 4.396 15 H 0.084 0.916 16 C -0.236 4.236 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.196 1.196 20 H -0.220 1.220 21 H -0.215 1.215 22 C 0.032 3.968 23 C 0.023 3.977 24 H 0.083 0.917 25 O -0.381 6.381 26 C 0.113 3.887 27 F -0.115 7.115 28 C -0.183 4.183 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.183 0.817 33 H 0.156 0.844 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.031 0.969 42 H 0.242 0.758 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.357 -9.967 4.266 17.203 hybrid contribution 1.205 1.495 -0.174 1.928 sum -12.152 -8.472 4.092 15.369 Atomic orbital electron populations 1.20997 0.87151 1.04888 1.04301 1.20398 0.98555 0.91143 0.92259 1.21441 0.92797 0.99822 1.01094 1.21408 0.95656 0.95829 0.94369 1.20045 0.92652 0.94733 1.13012 1.18434 0.87715 0.83737 0.76044 1.90755 1.70552 1.32218 1.52234 1.45822 1.07169 1.08284 1.73194 1.20766 0.79631 0.97093 0.96338 0.90921 1.22264 1.01477 0.99006 0.94511 1.20953 0.96393 0.85229 0.95213 1.44144 1.66981 1.14594 1.06853 1.19500 1.19124 0.86382 1.14619 0.91643 1.25689 0.98461 0.98708 1.00735 1.70131 1.28993 1.16585 1.41518 0.85280 0.79007 0.79081 0.77464 1.19553 1.22043 1.21504 1.21209 0.96204 0.95722 0.83690 1.22609 0.97737 0.95329 0.82019 0.91726 1.86402 1.79411 1.47358 1.24894 1.18074 0.91005 0.79979 0.99617 1.91524 1.81183 1.45629 1.93195 1.21289 0.90175 1.01448 1.05415 0.88847 0.89319 0.89749 0.81683 0.84350 0.75624 0.91421 0.90335 0.96517 0.92396 0.93873 0.91368 0.96902 0.75827 0.81849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.00 71.24 0.71 -0.21 16 2 C -0.02 -0.36 5.88 -19.82 -0.12 -0.48 16 3 C -0.13 -2.37 9.67 22.23 0.22 -2.15 16 4 C -0.05 -1.31 9.54 22.52 0.21 -1.09 16 5 C -0.20 -6.15 5.88 -20.05 -0.12 -6.27 16 6 C 0.55 20.48 7.73 86.74 0.67 21.15 16 7 O -0.58 -25.09 15.00 -3.94 -0.06 -25.15 16 8 N -0.69 -24.53 4.10 -445.45 -1.83 -26.36 16 9 C 0.17 6.12 2.47 45.01 0.11 6.23 16 10 H 0.07 2.82 7.57 -2.39 -0.02 2.80 16 11 C -0.13 -4.82 5.77 30.67 0.18 -4.65 16 12 C 0.15 6.03 6.26 86.36 0.54 6.57 16 13 N -0.60 -28.13 2.99 -699.09 -2.09 -30.22 16 14 C -0.27 -13.80 9.58 84.03 0.81 -12.99 16 15 H 0.07 3.36 7.88 -2.91 -0.02 3.34 16 16 C -0.04 -2.07 4.92 84.86 0.42 -1.65 16 17 N -0.93 -50.34 11.20 21.65 0.24 -50.10 16 18 Si 0.96 42.41 29.59 68.60 2.03 44.44 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 22 C 0.16 6.86 4.64 86.36 0.40 7.26 16 23 C 0.08 3.08 3.36 30.67 0.10 3.18 16 24 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 25 O -0.57 -19.04 13.21 -148.98 -1.97 -21.01 16 26 C 0.13 3.86 7.29 22.67 0.17 4.03 16 27 F -0.14 -4.68 15.55 44.97 0.70 -3.98 16 28 C -0.16 -3.28 9.66 22.28 0.22 -3.07 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 32 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.14 3.27 6.41 -2.91 -0.02 3.25 16 34 H 0.41 13.83 4.90 -92.71 -0.45 13.38 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.02 0.70 7.74 -2.39 -0.02 0.68 16 38 H 0.06 2.33 7.93 -2.39 -0.02 2.32 16 39 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 40 H 0.07 3.32 6.06 -2.39 -0.01 3.30 16 41 H 0.01 0.59 6.64 -2.39 -0.02 0.57 16 42 H 0.39 10.15 9.08 -74.06 -0.67 9.48 16 43 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -68.16 352.99 1.47 -66.69 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.07 Total: 29.82 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 4.51 Total: 15.86 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -3.68 Total: -106.67 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.03 Total: -46.16 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.70 Total: -3.98 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -68.16 1.47 -66.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090592717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.611 kcal (2) G-P(sol) polarization free energy of solvation -68.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds