Wall clock time and date at job start Fri Apr 10 2020 18:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38463 * 119.83049 * 2 1 4 4 C 1.37858 * 120.21596 * 179.69751 * 3 2 1 5 5 C 1.39647 * 119.88021 * 0.59795 * 4 3 2 6 6 C 1.47695 * 120.17016 * 179.70034 * 5 4 3 7 7 O 1.21567 * 120.00241 * 179.72643 * 6 5 4 8 8 N 1.34782 * 119.99458 * 359.72458 * 6 5 4 9 9 C 1.46497 * 119.99786 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.45375 * 34.96418 * 9 8 6 11 11 C 1.53045 * 109.46268 * 275.00264 * 9 8 6 12 12 C 1.53190 * 109.34313 * 178.63160 * 11 9 8 13 13 N 1.46929 * 108.77277 * 54.61547 * 12 11 9 14 14 C 1.36939 * 120.62427 * 126.37296 * 13 12 11 15 15 H 1.08001 * 119.99489 * 207.68007 * 14 13 12 16 16 C 1.38803 * 120.00513 * 27.68909 * 14 13 12 17 17 N 1.31619 * 120.00080 * 17.35333 * 16 14 13 18 18 Si 1.86797 * 120.00079 * 197.35962 * 16 14 13 19 19 H 1.48506 * 109.47348 * 59.99578 * 18 16 14 20 20 H 1.48498 * 109.47512 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47373 * 299.99844 * 18 16 14 22 22 C 1.46926 * 118.73807 * 306.38928 * 13 12 11 23 23 C 1.53041 * 109.48666 * 154.91520 * 9 8 6 24 24 H 1.08991 * 109.49548 * 61.38428 * 23 9 8 25 25 O 1.42898 * 109.49658 * 301.31934 * 23 9 8 26 26 C 1.39829 * 119.67055 * 359.42656 * 5 4 3 27 27 F 1.35087 * 120.11497 * 180.25348 * 26 5 4 28 28 C 1.38204 * 119.83229 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47332 * 269.97921 * 1 2 3 30 30 H 1.09004 * 109.47166 * 29.98247 * 1 2 3 31 31 H 1.08998 * 109.47282 * 149.97601 * 1 2 3 32 32 H 1.08006 * 119.88735 * 359.97438 * 3 2 1 33 33 H 1.08007 * 120.05537 * 180.30264 * 4 3 2 34 34 H 0.96998 * 120.00121 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.49503 * 58.65648 * 11 9 8 36 36 H 1.09008 * 109.48869 * 298.59874 * 11 9 8 37 37 H 1.09003 * 109.58588 * 174.39950 * 12 11 9 38 38 H 1.08996 * 109.58765 * 294.68805 * 12 11 9 39 39 H 0.97006 * 120.00073 * 180.02562 * 17 16 14 40 40 H 1.09010 * 109.57898 * 173.39920 * 22 13 12 41 41 H 1.08996 * 109.58654 * 293.81932 * 22 13 12 42 42 H 0.96692 * 113.99858 * 180.13188 * 25 23 9 43 43 H 1.07994 * 119.93932 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2012 0.0000 4 6 3.5743 1.2105 0.0063 5 6 4.2782 0.0044 0.0000 6 6 5.7551 0.0069 0.0000 7 8 6.3648 -1.0449 -0.0004 8 7 6.4269 1.1753 0.0005 9 6 7.8919 1.1779 -0.0001 10 1 8.2562 0.3366 -0.5897 11 6 8.4026 1.0521 1.4371 12 6 9.9342 1.0207 1.4305 13 7 10.4283 2.2057 0.7160 14 6 11.3345 3.0473 1.3040 15 1 11.3652 4.0895 1.0223 16 6 12.2135 2.5610 2.2618 17 7 12.4224 1.2657 2.3662 18 14 13.1000 3.7449 3.4028 19 1 12.1028 4.5150 4.1890 20 1 13.9747 2.9800 4.3275 21 1 13.9268 4.6811 2.5996 22 6 9.9314 2.4705 -0.6411 23 6 8.3999 2.4858 -0.6112 24 1 8.0561 3.3265 -0.0087 25 8 7.8981 2.6166 -1.9428 26 6 3.5777 -1.2058 -0.0004 27 9 4.2496 -2.3778 -0.0013 28 6 2.1945 -1.1989 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6511 2.1339 -0.0004 33 1 4.1089 2.1489 0.0112 34 1 5.9404 2.0145 0.0004 35 1 8.0217 0.1315 1.8793 36 1 8.0587 1.9058 2.0213 37 1 10.3043 1.0314 2.4557 38 1 10.2789 0.1176 0.9269 39 1 13.0364 0.9258 3.0359 40 1 10.2999 3.4379 -0.9827 41 1 10.2761 1.6870 -1.3158 42 1 8.1825 3.4239 -2.3927 43 1 1.6508 -2.1320 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090592723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:06 Heat of formation + Delta-G solvation = -85.043391 kcal Electronic energy + Delta-G solvation = -27278.623354 eV Core-core repulsion = 23238.673608 eV Total energy + Delta-G solvation = -4039.949746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.90005 -40.18455 -38.95860 -37.76217 -35.41805 -34.37658 -33.24691 -31.86188 -30.89364 -30.01232 -28.67091 -27.68334 -25.14188 -23.13751 -22.96214 -22.29616 -21.66675 -20.30546 -19.59987 -18.05638 -17.10560 -16.86673 -16.81684 -16.43696 -15.79925 -15.52588 -15.24158 -14.79525 -14.54871 -14.41762 -13.99865 -13.97591 -13.88891 -13.56131 -13.43429 -13.17595 -12.77684 -12.54065 -12.30632 -12.16199 -12.14990 -11.88230 -11.63826 -11.52122 -11.11983 -10.86636 -10.68113 -10.34977 -10.28042 -9.95720 -9.85386 -9.73014 -9.44980 -9.29022 -8.95574 -8.72182 -8.44946 -6.78321 -5.85223 -3.29526 0.49184 0.89190 2.76698 3.25350 3.35000 3.41038 3.41734 3.58640 3.95514 4.31632 4.34085 4.38574 4.50594 4.65912 4.86562 4.88164 5.07527 5.16267 5.24957 5.31097 5.31968 5.47246 5.54071 5.58195 5.72235 5.74814 5.76247 5.84664 5.96484 6.06987 6.11154 6.30369 6.47104 6.50680 6.53368 6.66782 6.76772 6.85275 7.28635 7.60437 7.69265 7.72013 7.90414 8.36980 8.39871 9.12439 9.74964 10.30846 11.23332 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.002810 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.890544 B = 9963.021209 C =10199.172712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.037 4.037 3 C -0.142 4.142 4 C -0.053 4.053 5 C -0.172 4.172 6 C 0.553 3.447 7 O -0.526 6.526 8 N -0.709 5.709 9 C 0.163 3.837 10 H 0.089 0.911 11 C -0.147 4.147 12 C 0.171 3.829 13 N -0.588 5.588 14 C -0.261 4.261 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.899 5.899 18 Si 0.905 3.095 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.121 3.879 23 C 0.080 3.920 24 H 0.056 0.944 25 O -0.571 6.571 26 C 0.163 3.837 27 F -0.114 7.114 28 C -0.169 4.169 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.394 0.606 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.024 0.976 39 H 0.257 0.743 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.374 0.626 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.532 1.653 -5.165 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.037 4.037 3 C -0.160 4.160 4 C -0.072 4.072 5 C -0.176 4.176 6 C 0.339 3.661 7 O -0.403 6.403 8 N -0.359 5.359 9 C 0.059 3.941 10 H 0.107 0.893 11 C -0.187 4.187 12 C 0.045 3.955 13 N -0.312 5.312 14 C -0.390 4.390 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.542 5.542 18 Si 0.734 3.266 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.208 1.208 22 C -0.007 4.007 23 C 0.019 3.981 24 H 0.074 0.926 25 O -0.375 6.375 26 C 0.142 3.858 27 F -0.092 7.092 28 C -0.188 4.188 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.229 0.771 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.220 0.780 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.173 0.179 -4.908 23.688 hybrid contribution 0.693 1.323 0.489 1.572 sum -22.480 1.502 -4.419 22.959 Atomic orbital electron populations 1.20880 0.90168 1.03443 1.03001 1.19930 0.96589 0.92159 0.95056 1.21024 0.93758 0.98051 1.03150 1.21228 0.94331 0.96659 0.94932 1.20200 0.94444 0.93272 1.09724 1.17956 0.86227 0.84522 0.77360 1.90847 1.69318 1.30955 1.49163 1.45968 1.07939 1.07657 1.74356 1.21043 0.77388 0.97938 0.97684 0.89274 1.22613 1.00980 1.01211 0.93899 1.20831 0.86543 0.88411 0.99723 1.44041 1.48652 1.28265 1.10229 1.19109 1.10461 0.90183 1.19265 0.91567 1.25072 0.97061 0.95801 1.01465 1.70029 1.37312 1.11470 1.35393 0.86341 0.79210 0.80219 0.80794 1.20961 1.21545 1.20820 1.21525 0.90213 0.99678 0.89254 1.22780 0.96678 0.96322 0.82309 0.92582 1.86488 1.75672 1.46870 1.28500 1.17705 0.89640 0.80980 0.97473 1.91604 1.80419 1.44520 1.92620 1.21011 0.91750 0.99688 1.06342 0.90373 0.90836 0.91004 0.84756 0.84586 0.77118 0.91863 0.92317 0.88818 0.95746 0.93343 0.92118 0.95262 0.77992 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.00 36.00 0.36 -0.20 16 2 C -0.04 -0.29 5.88 -104.55 -0.62 -0.91 16 3 C -0.14 -1.11 9.68 -39.64 -0.38 -1.49 16 4 C -0.05 -0.52 9.54 -39.19 -0.37 -0.89 16 5 C -0.17 -2.34 5.88 -104.91 -0.62 -2.95 16 6 C 0.55 9.45 7.73 -12.40 -0.10 9.36 16 7 O -0.53 -11.19 15.00 5.31 0.08 -11.11 16 8 N -0.71 -11.03 4.87 -54.75 -0.27 -11.30 16 9 C 0.16 3.01 2.12 -67.89 -0.14 2.86 16 10 H 0.09 1.91 7.57 -51.93 -0.39 1.51 16 11 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 12 C 0.17 4.13 5.31 -3.71 -0.02 4.12 16 13 N -0.59 -14.42 2.99 -172.32 -0.52 -14.93 16 14 C -0.26 -6.96 9.58 -15.06 -0.14 -7.10 16 15 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 16 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 17 N -0.90 -25.93 11.19 55.49 0.62 -25.31 16 18 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.12 2.46 6.14 -3.71 -0.02 2.44 16 23 C 0.08 1.36 3.14 -26.61 -0.08 1.28 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 O -0.57 -8.48 13.16 -35.23 -0.46 -8.95 16 26 C 0.16 2.19 7.29 -38.95 -0.28 1.90 16 27 F -0.11 -1.84 15.55 2.25 0.04 -1.80 16 28 C -0.17 -1.65 9.66 -39.56 -0.38 -2.04 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 33 H 0.14 1.05 6.41 -52.48 -0.34 0.71 16 34 H 0.39 4.90 6.64 -40.82 -0.27 4.63 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 37 H 0.09 2.51 6.03 -51.93 -0.31 2.19 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.06 1.15 7.93 -51.92 -0.41 0.74 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.37 3.92 9.08 45.56 0.41 4.34 16 43 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -33.70 357.19 -8.28 -41.98 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.08 Total: 6.47 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -3.04 Total: 3.33 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.16 Total: -51.54 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.38 Total: -20.06 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.70 -8.28 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090592723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.065 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds