Wall clock time and date at job start Fri Apr 10 2020 18:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38463 * 119.83049 * 2 1 4 4 C 1.37858 * 120.21596 * 179.69751 * 3 2 1 5 5 C 1.39647 * 119.88021 * 0.59795 * 4 3 2 6 6 C 1.47695 * 120.17016 * 179.70034 * 5 4 3 7 7 O 1.21567 * 120.00241 * 179.72643 * 6 5 4 8 8 N 1.34782 * 119.99458 * 359.72458 * 6 5 4 9 9 C 1.46497 * 119.99786 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.45375 * 34.96418 * 9 8 6 11 11 C 1.53045 * 109.46268 * 275.00264 * 9 8 6 12 12 C 1.53190 * 109.34313 * 178.63160 * 11 9 8 13 13 N 1.46929 * 108.77277 * 54.61547 * 12 11 9 14 14 C 1.36939 * 120.62427 * 126.37296 * 13 12 11 15 15 H 1.08001 * 119.99489 * 207.68007 * 14 13 12 16 16 C 1.38803 * 120.00513 * 27.68909 * 14 13 12 17 17 N 1.31619 * 120.00080 * 17.35333 * 16 14 13 18 18 Si 1.86797 * 120.00079 * 197.35962 * 16 14 13 19 19 H 1.48506 * 109.47348 * 59.99578 * 18 16 14 20 20 H 1.48498 * 109.47512 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47373 * 299.99844 * 18 16 14 22 22 C 1.46926 * 118.73807 * 306.38928 * 13 12 11 23 23 C 1.53041 * 109.48666 * 154.91520 * 9 8 6 24 24 H 1.08991 * 109.49548 * 61.38428 * 23 9 8 25 25 O 1.42898 * 109.49658 * 301.31934 * 23 9 8 26 26 C 1.39829 * 119.67055 * 359.42656 * 5 4 3 27 27 F 1.35087 * 120.11497 * 180.25348 * 26 5 4 28 28 C 1.38204 * 119.83229 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47332 * 269.97921 * 1 2 3 30 30 H 1.09004 * 109.47166 * 29.98247 * 1 2 3 31 31 H 1.08998 * 109.47282 * 149.97601 * 1 2 3 32 32 H 1.08006 * 119.88735 * 359.97438 * 3 2 1 33 33 H 1.08007 * 120.05537 * 180.30264 * 4 3 2 34 34 H 0.96998 * 120.00121 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.49503 * 58.65648 * 11 9 8 36 36 H 1.09008 * 109.48869 * 298.59874 * 11 9 8 37 37 H 1.09003 * 109.58588 * 174.39950 * 12 11 9 38 38 H 1.08996 * 109.58765 * 294.68805 * 12 11 9 39 39 H 0.97006 * 120.00073 * 180.02562 * 17 16 14 40 40 H 1.09010 * 109.57898 * 173.39920 * 22 13 12 41 41 H 1.08996 * 109.58654 * 293.81932 * 22 13 12 42 42 H 0.96692 * 113.99858 * 180.13188 * 25 23 9 43 43 H 1.07994 * 119.93932 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2012 0.0000 4 6 3.5743 1.2105 0.0063 5 6 4.2782 0.0044 0.0000 6 6 5.7551 0.0069 0.0000 7 8 6.3648 -1.0449 -0.0004 8 7 6.4269 1.1753 0.0005 9 6 7.8919 1.1779 -0.0001 10 1 8.2562 0.3366 -0.5897 11 6 8.4026 1.0521 1.4371 12 6 9.9342 1.0207 1.4305 13 7 10.4283 2.2057 0.7160 14 6 11.3345 3.0473 1.3040 15 1 11.3652 4.0895 1.0223 16 6 12.2135 2.5610 2.2618 17 7 12.4224 1.2657 2.3662 18 14 13.1000 3.7449 3.4028 19 1 12.1028 4.5150 4.1890 20 1 13.9747 2.9800 4.3275 21 1 13.9268 4.6811 2.5996 22 6 9.9314 2.4705 -0.6411 23 6 8.3999 2.4858 -0.6112 24 1 8.0561 3.3265 -0.0087 25 8 7.8981 2.6166 -1.9428 26 6 3.5777 -1.2058 -0.0004 27 9 4.2496 -2.3778 -0.0013 28 6 2.1945 -1.1989 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6511 2.1339 -0.0004 33 1 4.1089 2.1489 0.0112 34 1 5.9404 2.0145 0.0004 35 1 8.0217 0.1315 1.8793 36 1 8.0587 1.9058 2.0213 37 1 10.3043 1.0314 2.4557 38 1 10.2789 0.1176 0.9269 39 1 13.0364 0.9258 3.0359 40 1 10.2999 3.4379 -0.9827 41 1 10.2761 1.6870 -1.3158 42 1 8.1825 3.4239 -2.3927 43 1 1.6508 -2.1320 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090592723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:05 Heat of formation + Delta-G solvation = -109.782446 kcal Electronic energy + Delta-G solvation = -27279.696120 eV Core-core repulsion = 23238.673608 eV Total energy + Delta-G solvation = -4041.022512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.96296 -41.39730 -40.03953 -39.13973 -36.99939 -35.86872 -34.24639 -33.51236 -31.82381 -31.53863 -30.24739 -28.55021 -26.90981 -24.39618 -23.89465 -23.80186 -23.02808 -21.56731 -21.19581 -19.31925 -18.69321 -18.07547 -17.82192 -17.75166 -16.98832 -16.84649 -16.66440 -16.21721 -15.82258 -15.70937 -15.42616 -15.25384 -14.96202 -14.61708 -14.49150 -14.41088 -14.31420 -13.90132 -13.65555 -13.30139 -13.10369 -13.00942 -12.76015 -12.69555 -12.65572 -12.42581 -12.29324 -12.13888 -12.09046 -11.90224 -11.44973 -11.13018 -10.96707 -10.57814 -10.20576 -9.99398 -9.68939 -8.79107 -7.91057 -5.38976 -0.37035 0.13805 1.48361 1.51155 1.58046 1.72723 1.99254 2.48894 2.62718 3.09042 3.14010 3.25890 3.51594 3.59539 3.65293 3.84496 3.87654 4.01763 4.14824 4.19793 4.20764 4.35872 4.49726 4.62495 4.63458 4.63801 4.80511 4.87817 4.89401 4.96919 5.00110 5.03321 5.09950 5.12393 5.27863 5.33479 5.39466 5.44284 5.57974 5.63758 5.80494 6.32267 6.45690 6.88412 7.07823 7.14401 7.76321 8.29479 9.16418 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.002810 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.890544 B = 9963.021209 C =10199.172712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.025 4.025 3 C -0.130 4.130 4 C -0.047 4.047 5 C -0.200 4.200 6 C 0.548 3.452 7 O -0.582 6.582 8 N -0.693 5.693 9 C 0.169 3.831 10 H 0.052 0.948 11 C -0.129 4.129 12 C 0.181 3.819 13 N -0.603 5.603 14 C -0.266 4.266 15 H 0.080 0.920 16 C -0.053 4.053 17 N -0.938 5.938 18 Si 0.973 3.027 19 H -0.274 1.274 20 H -0.299 1.299 21 H -0.272 1.272 22 C 0.117 3.883 23 C 0.104 3.896 24 H 0.080 0.920 25 O -0.571 6.571 26 C 0.126 3.874 27 F -0.143 7.143 28 C -0.169 4.169 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.175 0.825 33 H 0.160 0.840 34 H 0.414 0.586 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.064 0.936 38 H -0.012 1.012 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.009 0.991 42 H 0.397 0.603 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.135 5.220 -5.571 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.025 4.025 3 C -0.148 4.148 4 C -0.066 4.066 5 C -0.204 4.204 6 C 0.337 3.663 7 O -0.463 6.463 8 N -0.344 5.344 9 C 0.064 3.936 10 H 0.070 0.930 11 C -0.169 4.169 12 C 0.054 3.946 13 N -0.327 5.327 14 C -0.396 4.396 15 H 0.097 0.903 16 C -0.248 4.248 17 N -0.584 5.584 18 Si 0.801 3.199 19 H -0.199 1.199 20 H -0.226 1.226 21 H -0.197 1.197 22 C -0.010 4.010 23 C 0.043 3.957 24 H 0.097 0.903 25 O -0.378 6.378 26 C 0.105 3.895 27 F -0.121 7.121 28 C -0.188 4.188 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.192 0.808 33 H 0.177 0.823 34 H 0.252 0.748 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.006 0.994 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.027 0.973 42 H 0.248 0.752 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -26.825 3.822 -5.356 27.620 hybrid contribution 1.690 0.225 0.513 1.780 sum -25.135 4.048 -4.843 25.915 Atomic orbital electron populations 1.20999 0.87320 1.04895 1.04212 1.20427 0.98490 0.91334 0.92257 1.21510 0.92908 0.99640 1.00740 1.21515 0.95424 0.95830 0.93796 1.20042 0.92079 0.95054 1.13250 1.18610 0.87962 0.83825 0.75944 1.90813 1.70827 1.32900 1.51764 1.45672 1.06534 1.08404 1.73830 1.20681 0.79257 0.97749 0.95887 0.93017 1.22324 0.97747 1.01278 0.95554 1.20526 0.89180 0.87362 0.97534 1.44250 1.48740 1.27770 1.11970 1.19556 1.10060 0.91002 1.18953 0.90252 1.25924 0.98410 0.97204 1.03266 1.70214 1.38485 1.13540 1.36158 0.85259 0.78014 0.78061 0.78599 1.19923 1.22552 1.19745 1.21709 0.92692 0.99830 0.86739 1.22290 0.93789 0.95790 0.83804 0.90257 1.86462 1.75185 1.48784 1.27395 1.18231 0.91166 0.80201 0.99878 1.91522 1.81286 1.46092 1.93229 1.21273 0.90142 1.01608 1.05742 0.89030 0.88825 0.90245 0.80752 0.82291 0.74819 0.92972 0.90738 0.91752 0.99366 0.94038 0.90190 0.97263 0.75244 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.00 71.24 0.71 0.16 16 2 C -0.02 -0.30 5.88 -19.82 -0.12 -0.41 16 3 C -0.13 -1.44 9.68 22.23 0.22 -1.23 16 4 C -0.05 -0.78 9.54 22.52 0.21 -0.57 16 5 C -0.20 -5.39 5.88 -20.05 -0.12 -5.50 16 6 C 0.55 19.31 7.73 86.74 0.67 19.98 16 7 O -0.58 -26.64 15.00 -3.93 -0.06 -26.70 16 8 N -0.69 -21.19 4.87 -445.41 -2.17 -23.36 16 9 C 0.17 6.33 2.12 45.02 0.10 6.42 16 10 H 0.05 2.34 7.57 -2.38 -0.02 2.33 16 11 C -0.13 -5.33 5.65 30.67 0.17 -5.16 16 12 C 0.18 9.21 5.31 86.36 0.46 9.67 16 13 N -0.60 -30.02 2.99 -699.09 -2.09 -32.11 16 14 C -0.27 -14.17 9.58 84.03 0.81 -13.37 16 15 H 0.08 3.96 7.89 -2.91 -0.02 3.93 16 16 C -0.05 -2.91 4.91 84.86 0.42 -2.50 16 17 N -0.94 -56.39 11.19 21.65 0.24 -56.15 16 18 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 20 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.12 4.70 6.14 86.36 0.53 5.23 16 23 C 0.10 3.37 3.14 30.67 0.10 3.46 16 24 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 25 O -0.57 -15.44 13.16 -148.98 -1.96 -17.40 16 26 C 0.13 3.45 7.29 22.68 0.17 3.62 16 27 F -0.14 -5.01 15.55 44.97 0.70 -4.31 16 28 C -0.17 -3.06 9.66 22.28 0.22 -2.84 16 29 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.09 0.14 8.08 -2.39 -0.02 0.12 16 31 H 0.08 0.31 8.08 -2.39 -0.02 0.29 16 32 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.16 1.78 6.41 -2.91 -0.02 1.76 16 34 H 0.41 9.22 6.64 -92.71 -0.62 8.60 16 35 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.06 3.65 6.03 -2.39 -0.01 3.63 16 38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 40 H 0.08 2.88 7.93 -2.38 -0.02 2.86 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.40 6.84 9.08 -74.06 -0.67 6.17 16 43 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -79.73 357.19 0.99 -78.74 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -0.23 Total: 18.28 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 4.54 Total: 16.96 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.02 Total: -111.62 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -2.02 Total: -44.10 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.70 Total: -4.31 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -79.73 0.99 -78.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090592723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.040 kcal (2) G-P(sol) polarization free energy of solvation -79.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds