Wall clock time and date at job start Fri Apr 10 2020 18:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38453 * 119.89214 * 2 1 4 4 C 1.38204 * 120.33816 * 179.97438 * 3 2 1 5 5 C 1.38325 * 120.11581 * 359.78899 * 4 3 2 6 6 F 1.35100 * 120.11052 * 180.25617 * 5 4 3 7 7 C 1.39820 * 119.77773 * 0.48737 * 5 4 3 8 8 C 1.47701 * 120.16585 * 179.76990 * 7 5 4 9 9 O 1.21569 * 119.99935 * 359.72208 * 8 7 5 10 10 N 1.34775 * 119.99864 * 179.71746 * 8 7 5 11 11 C 1.46505 * 119.99601 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.46202 * 325.03085 * 11 10 8 13 13 C 1.53037 * 109.45562 * 85.00601 * 11 10 8 14 14 C 1.53191 * 109.31329 * 181.38121 * 13 11 10 15 15 N 1.46921 * 108.77663 * 305.36980 * 14 13 11 16 16 C 1.36942 * 120.62733 * 233.32958 * 15 14 13 17 17 H 1.08008 * 119.99813 * 151.87450 * 16 15 14 18 18 C 1.38805 * 120.00309 * 331.88271 * 16 15 14 19 19 N 1.31622 * 119.99962 * 343.11515 * 18 16 15 20 20 Si 1.86795 * 120.00332 * 163.11972 * 18 16 15 21 21 H 1.48504 * 109.47268 * 89.99585 * 20 18 16 22 22 H 1.48502 * 109.47416 * 209.99914 * 20 18 16 23 23 H 1.48507 * 109.47127 * 329.99639 * 20 18 16 24 24 C 1.46922 * 118.74484 * 53.59992 * 15 14 13 25 25 C 1.53042 * 109.45687 * 205.06983 * 11 10 8 26 26 H 1.08999 * 109.49699 * 298.59979 * 25 11 10 27 27 O 1.42900 * 109.49692 * 58.67187 * 25 11 10 28 28 C 1.37858 * 119.88439 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47173 * 269.98437 * 1 2 3 30 30 H 1.09005 * 109.46493 * 29.97899 * 1 2 3 31 31 H 1.08990 * 109.47473 * 149.97628 * 1 2 3 32 32 H 1.07997 * 119.83475 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.94130 * 179.97438 * 4 3 2 34 34 H 0.97001 * 120.00031 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.50277 * 61.43340 * 13 11 10 36 36 H 1.09004 * 109.52866 * 301.35261 * 13 11 10 37 37 H 1.09002 * 109.58966 * 185.57851 * 14 13 11 38 38 H 1.09011 * 109.58493 * 65.15354 * 14 13 11 39 39 H 0.96995 * 120.00418 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.58165 * 66.18344 * 24 15 14 41 41 H 1.08999 * 109.59419 * 186.60311 * 24 15 14 42 42 H 0.96699 * 113.99954 * 179.97438 * 27 25 11 43 43 H 1.07990 * 120.06428 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2003 0.0000 4 6 3.5790 1.2111 0.0005 5 6 4.2824 0.0200 0.0055 6 9 5.6333 0.0307 0.0112 7 6 3.5905 -1.1950 -0.0004 8 6 4.3329 -2.4719 -0.0003 9 8 5.5486 -2.4681 -0.0002 10 7 3.6626 -3.6411 -0.0002 11 6 4.3990 -4.9076 -0.0007 12 1 5.3093 -4.7981 -0.5900 13 6 4.7644 -5.2853 1.4366 14 6 5.5640 -6.5919 1.4294 15 7 4.7902 -7.6160 0.7145 16 6 4.5257 -8.8255 1.2996 17 1 3.6379 -9.3758 1.0245 18 6 5.3982 -9.3443 2.2462 19 7 6.6205 -8.8662 2.3466 20 14 4.8381 -10.7209 3.3777 21 1 5.1362 -12.0321 2.7473 22 1 5.5565 -10.6199 4.6735 23 1 3.3762 -10.6053 3.6120 24 6 4.3107 -7.3200 -0.6424 25 6 3.5251 -6.0052 -0.6120 26 1 2.6258 -6.1321 -0.0092 27 8 3.1591 -5.6374 -1.9434 28 6 2.1939 -1.1953 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5141 32 1 1.6526 2.1330 -0.0004 33 1 4.1108 2.1511 0.0001 34 1 2.6926 -3.6440 -0.0006 35 1 3.8537 -5.4194 2.0204 36 1 5.3671 -4.4924 1.8797 37 1 5.7415 -6.9174 2.4544 38 1 6.5168 -6.4345 0.9236 39 1 7.2304 -9.2289 3.0078 40 1 5.1612 -7.2220 -1.3171 41 1 3.6613 -8.1259 -0.9845 42 1 2.6037 -6.2889 -2.3929 43 1 1.6531 -2.1300 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090597401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:09 Heat of formation + Delta-G solvation = -85.009103 kcal Electronic energy + Delta-G solvation = -27397.203692 eV Core-core repulsion = 23357.255433 eV Total energy + Delta-G solvation = -4039.948259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.88001 -40.21001 -38.94939 -37.75603 -35.42057 -34.37324 -32.77886 -32.31300 -31.41324 -29.82485 -28.51410 -26.92295 -25.41938 -24.13876 -22.60873 -22.26269 -21.43569 -20.24310 -19.49575 -18.06286 -17.25867 -16.96390 -16.78223 -16.41375 -15.78191 -15.56035 -15.06488 -14.80592 -14.48524 -14.43154 -14.06482 -13.93589 -13.90560 -13.61409 -13.45592 -13.18628 -12.77664 -12.37582 -12.30839 -12.22535 -12.13265 -11.86230 -11.63768 -11.52055 -11.12215 -10.87684 -10.67793 -10.33754 -10.29265 -9.96675 -9.85667 -9.73627 -9.45542 -9.43251 -8.83932 -8.71397 -8.45873 -6.77550 -5.85619 -3.30446 0.50866 0.86029 2.76975 3.23781 3.33944 3.40898 3.42535 3.57209 4.00869 4.32396 4.34880 4.40872 4.48030 4.58586 4.79380 4.93866 5.14842 5.25131 5.27223 5.31988 5.44010 5.46230 5.47261 5.53584 5.72123 5.74771 5.75969 5.86070 5.95932 6.08359 6.11143 6.29665 6.46950 6.50162 6.52870 6.66450 6.76601 6.84423 7.28414 7.59893 7.68060 7.71963 7.89954 8.36867 8.38526 9.12234 9.74586 10.30745 11.22937 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019752 B = 0.002988 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.219009 B = 9367.340388 C = 9747.413694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C -0.070 4.070 4 C -0.162 4.162 5 C 0.152 3.848 6 F -0.115 7.115 7 C -0.161 4.161 8 C 0.553 3.447 9 O -0.525 6.525 10 N -0.709 5.709 11 C 0.163 3.837 12 H 0.089 0.911 13 C -0.147 4.147 14 C 0.172 3.828 15 N -0.588 5.588 16 C -0.261 4.261 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.121 3.879 25 C 0.080 3.920 26 H 0.056 0.944 27 O -0.571 6.571 28 C -0.059 4.059 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.394 0.606 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.024 0.976 39 H 0.256 0.744 40 H 0.029 0.971 41 H 0.060 0.940 42 H 0.374 0.626 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 18.580 -5.122 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C -0.089 4.089 4 C -0.181 4.181 5 C 0.131 3.869 6 F -0.093 7.093 7 C -0.165 4.165 8 C 0.339 3.661 9 O -0.402 6.402 10 N -0.359 5.359 11 C 0.059 3.941 12 H 0.107 0.893 13 C -0.187 4.187 14 C 0.046 3.954 15 N -0.312 5.312 16 C -0.390 4.390 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.542 5.542 20 Si 0.733 3.267 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.007 4.007 25 C 0.019 3.981 26 H 0.074 0.926 27 O -0.375 6.375 28 C -0.077 4.077 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.229 0.771 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.220 0.780 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.338 19.014 -4.861 23.182 hybrid contribution -0.728 -1.212 0.478 1.493 sum -13.065 17.802 -4.384 22.513 Atomic orbital electron populations 1.20793 0.90197 1.03245 1.02752 1.19894 0.96809 0.92604 1.01477 1.21052 0.93000 0.98142 0.96668 1.21146 0.94960 0.97055 1.04913 1.17734 0.77645 0.93090 0.98425 1.91606 1.27756 1.97180 1.92710 1.20209 0.94382 0.93271 1.08647 1.17955 0.87348 0.83406 0.77422 1.90850 1.12948 1.87277 1.49078 1.45975 1.09977 1.05632 1.74290 1.21050 0.95131 0.80178 0.97696 0.89254 1.22611 1.01440 1.00767 0.93887 1.20827 0.91073 0.83885 0.99641 1.44053 1.63231 1.13633 1.10282 1.19137 1.03525 0.96499 1.19848 0.91572 1.25090 0.94558 0.98248 1.01478 1.70031 1.04102 1.44192 1.35865 0.86284 0.78128 0.81830 0.80410 1.21307 1.21458 1.20430 1.21526 0.96634 0.93243 0.89283 1.22777 0.97183 0.95796 0.82308 0.92579 1.86489 1.73260 1.49253 1.28530 1.21125 0.91800 0.98610 0.96204 0.90803 0.91236 0.91102 0.84660 0.84078 0.77114 0.92309 0.91851 0.88881 0.95743 0.93396 0.95288 0.92123 0.77988 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.01 36.01 0.36 -0.23 16 2 C -0.11 -0.86 5.87 -104.68 -0.61 -1.48 16 3 C -0.07 -0.53 9.69 -39.51 -0.38 -0.92 16 4 C -0.16 -1.54 10.01 -39.56 -0.40 -1.94 16 5 C 0.15 2.03 7.29 -38.96 -0.28 1.74 16 6 F -0.11 -1.85 15.55 2.25 0.04 -1.81 16 7 C -0.16 -2.19 5.88 -104.91 -0.62 -2.80 16 8 C 0.55 9.43 7.73 -12.40 -0.10 9.34 16 9 O -0.52 -11.15 15.00 5.30 0.08 -11.07 16 10 N -0.71 -11.01 4.87 -54.75 -0.27 -11.28 16 11 C 0.16 3.00 2.12 -67.89 -0.14 2.85 16 12 H 0.09 1.91 7.57 -51.93 -0.39 1.51 16 13 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 14 C 0.17 4.15 5.29 -3.71 -0.02 4.13 16 15 N -0.59 -14.40 2.99 -172.32 -0.52 -14.92 16 16 C -0.26 -6.95 9.58 -15.06 -0.14 -7.10 16 17 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16 18 C 0.01 0.15 4.92 -17.43 -0.09 0.07 16 19 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16 20 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C 0.12 2.45 6.14 -3.71 -0.02 2.43 16 25 C 0.08 1.36 3.14 -26.61 -0.08 1.28 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 O -0.57 -8.46 13.16 -35.23 -0.46 -8.93 16 28 C -0.06 -0.59 9.18 -39.19 -0.36 -0.95 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.39 4.91 6.64 -40.82 -0.27 4.64 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 38 H 0.02 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.37 3.91 9.08 45.56 0.41 4.32 16 43 H 0.14 1.09 6.40 -52.49 -0.34 0.75 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -33.62 357.22 -8.28 -41.90 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.08 Total: 6.46 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -3.04 Total: 3.34 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.16 Total: -51.46 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.38 Total: -19.99 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.62 -8.28 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090597401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.111 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds