Wall clock time and date at job start Fri Apr 10 2020 18:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38464 * 119.89402 * 2 1 4 4 C 1.38197 * 120.34112 * 179.97438 * 3 2 1 5 5 C 1.38322 * 120.11840 * 359.78706 * 4 3 2 6 6 F 1.35099 * 120.11111 * 180.25425 * 5 4 3 7 7 C 1.39828 * 119.77893 * 0.48817 * 5 4 3 8 8 C 1.47690 * 120.16369 * 179.76669 * 7 5 4 9 9 O 1.21568 * 120.00424 * 359.71999 * 8 7 5 10 10 N 1.34779 * 119.99326 * 179.72207 * 8 7 5 11 11 C 1.46506 * 119.99720 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.45572 * 324.97404 * 11 10 8 13 13 C 1.53041 * 109.46115 * 84.93026 * 11 10 8 14 14 C 1.53185 * 109.31134 * 181.38764 * 13 11 10 15 15 N 1.46928 * 108.77593 * 305.36181 * 14 13 11 16 16 C 1.36937 * 120.63158 * 233.61013 * 15 14 13 17 17 H 1.07999 * 119.99338 * 152.79946 * 16 15 14 18 18 C 1.38805 * 120.00254 * 332.79852 * 16 15 14 19 19 N 1.31614 * 120.00165 * 159.75157 * 18 16 15 20 20 Si 1.86805 * 120.00143 * 339.75185 * 18 16 15 21 21 H 1.48501 * 109.47071 * 94.89562 * 20 18 16 22 22 H 1.48490 * 109.47238 * 214.89673 * 20 18 16 23 23 H 1.48501 * 109.46711 * 334.89936 * 20 18 16 24 24 C 1.46932 * 118.73522 * 53.61323 * 15 14 13 25 25 C 1.53038 * 109.46123 * 205.00213 * 11 10 8 26 26 H 1.08998 * 109.49945 * 58.62262 * 25 11 10 27 27 O 1.42910 * 109.49317 * 298.56435 * 25 11 10 28 28 C 1.37861 * 119.89475 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47205 * 269.97911 * 1 2 3 30 30 H 1.09005 * 109.47462 * 29.97928 * 1 2 3 31 31 H 1.08997 * 109.47383 * 149.97924 * 1 2 3 32 32 H 1.08006 * 119.82714 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.94002 * 180.02562 * 4 3 2 34 34 H 0.96995 * 120.00351 * 359.97438 * 10 8 7 35 35 H 1.09006 * 109.49712 * 301.33972 * 13 11 10 36 36 H 1.08996 * 109.49438 * 61.43067 * 13 11 10 37 37 H 1.08994 * 109.59113 * 65.15254 * 14 13 11 38 38 H 1.09005 * 109.58425 * 185.58184 * 14 13 11 39 39 H 0.96998 * 120.00712 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.58198 * 186.59926 * 24 15 14 41 41 H 1.08999 * 109.58892 * 66.17937 * 24 15 14 42 42 H 0.96699 * 113.99378 * 179.97438 * 27 25 11 43 43 H 1.08005 * 120.05401 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.2004 0.0000 4 6 3.5789 1.2112 0.0005 5 6 4.2823 0.0202 0.0055 6 9 5.6333 0.0309 0.0112 7 6 3.5905 -1.1949 -0.0003 8 6 4.3330 -2.4716 -0.0003 9 8 5.5487 -2.4679 -0.0003 10 7 3.6627 -3.6409 -0.0002 11 6 4.3992 -4.9074 0.0004 12 1 5.3095 -4.7983 -0.5892 13 6 4.7651 -5.2837 1.4380 14 6 5.5648 -6.5902 1.4317 15 7 4.7907 -7.6151 0.7181 16 6 4.5217 -8.8219 1.3066 17 1 3.6413 -9.3780 1.0200 18 6 5.3803 -9.3304 2.2715 19 7 4.9555 -10.2502 3.1115 20 14 7.1388 -8.7092 2.3776 21 1 7.2194 -7.6207 3.3846 22 1 8.0339 -9.8234 2.7805 23 1 7.5610 -8.1896 1.0521 24 6 4.3109 -7.3204 -0.6390 25 6 3.5253 -6.0057 -0.6096 26 1 3.2452 -5.7258 -1.6251 27 8 2.3468 -6.1718 0.1816 28 6 2.1940 -1.1952 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6524 2.1331 0.0004 33 1 4.1107 2.1513 0.0009 34 1 2.6928 -3.6439 0.0001 35 1 5.3681 -4.4902 1.8795 36 1 3.8546 -5.4172 2.0220 37 1 6.5173 -6.4334 0.9254 38 1 5.7427 -6.9147 2.4570 39 1 5.5556 -10.6059 3.7856 40 1 3.6614 -8.1267 -0.9800 41 1 5.1610 -7.2231 -1.3141 42 1 1.7451 -6.8535 -0.1476 43 1 1.6532 -2.1300 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090597403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:14 Heat of formation + Delta-G solvation = -103.226495 kcal Electronic energy + Delta-G solvation = -27617.805149 eV Core-core repulsion = 23577.066924 eV Total energy + Delta-G solvation = -4040.738224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.93889 -41.45849 -40.14335 -39.23012 -36.76702 -35.81291 -34.06638 -33.44943 -32.81636 -31.57033 -30.74958 -27.51317 -27.09958 -25.19465 -24.41244 -23.82080 -22.70359 -21.53388 -21.07641 -19.22936 -18.86198 -18.11872 -17.87183 -17.61620 -17.28692 -16.85383 -16.51647 -15.98886 -15.94242 -15.85573 -15.70606 -15.23318 -15.09232 -14.93147 -14.57634 -14.42470 -14.37102 -13.97525 -13.88892 -13.63280 -13.15799 -12.97373 -12.85155 -12.81708 -12.60394 -12.46975 -12.30547 -12.15193 -11.92030 -11.78164 -11.46176 -11.11734 -11.06268 -10.61971 -10.32394 -10.06178 -9.56282 -8.93872 -8.17672 -5.47894 -0.37418 0.10587 1.27783 1.37556 1.45218 1.69736 1.96644 2.39437 2.60317 2.99535 3.16558 3.25739 3.36007 3.51053 3.65837 3.75686 3.82383 3.89674 4.14293 4.15427 4.18058 4.21669 4.39228 4.54866 4.57276 4.69548 4.75584 4.82832 4.85274 4.86763 4.92980 4.93331 4.96465 4.98374 5.10642 5.28862 5.32475 5.37628 5.45832 5.79369 5.84375 6.11804 6.43436 6.84254 6.98889 7.09585 7.59504 8.00676 9.01856 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.003295 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.764523 B = 8496.604853 C = 9288.932348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.055 4.055 4 C -0.157 4.157 5 C 0.114 3.886 6 F -0.142 7.142 7 C -0.187 4.187 8 C 0.549 3.451 9 O -0.575 6.575 10 N -0.697 5.697 11 C 0.165 3.835 12 H 0.083 0.917 13 C -0.126 4.126 14 C 0.127 3.873 15 N -0.608 5.608 16 C -0.234 4.234 17 H 0.065 0.935 18 C -0.033 4.033 19 N -0.955 5.955 20 Si 0.933 3.067 21 H -0.288 1.288 22 H -0.309 1.309 23 H -0.261 1.261 24 C 0.112 3.888 25 C 0.098 3.902 26 H 0.094 0.906 27 O -0.565 6.565 28 C -0.058 4.058 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.176 0.824 33 H 0.162 0.838 34 H 0.415 0.585 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.048 0.952 39 H 0.260 0.740 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.392 0.608 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.867 25.243 -10.892 30.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.073 4.073 4 C -0.176 4.176 5 C 0.094 3.906 6 F -0.121 7.121 7 C -0.191 4.191 8 C 0.337 3.663 9 O -0.456 6.456 10 N -0.349 5.349 11 C 0.060 3.940 12 H 0.101 0.899 13 C -0.166 4.166 14 C 0.001 3.999 15 N -0.332 5.332 16 C -0.364 4.364 17 H 0.083 0.917 18 C -0.227 4.227 19 N -0.601 5.601 20 Si 0.764 3.236 21 H -0.216 1.216 22 H -0.238 1.238 23 H -0.186 1.186 24 C -0.014 4.014 25 C 0.037 3.963 26 H 0.112 0.888 27 O -0.373 6.373 28 C -0.077 4.077 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.193 0.807 33 H 0.180 0.820 34 H 0.254 0.746 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.242 0.758 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.661 25.576 -10.462 29.993 hybrid contribution 1.211 -0.913 0.383 1.564 sum -10.450 24.663 -10.079 28.619 Atomic orbital electron populations 1.20893 0.87714 1.04653 1.03754 1.20318 0.98483 0.91933 0.99210 1.21578 0.92200 0.99751 0.93786 1.21445 0.95903 0.96465 1.03757 1.18239 0.76825 0.94633 1.00910 1.91526 1.29852 1.97369 1.93313 1.20028 0.95626 0.91455 1.12010 1.18566 0.86982 0.84710 0.76041 1.90812 1.15192 1.88085 1.51518 1.45790 1.11074 1.04185 1.73812 1.20817 0.94916 0.82025 0.96274 0.89866 1.22117 1.00435 0.96490 0.97562 1.21263 0.93594 0.89021 0.95990 1.44303 1.63415 1.12117 1.13375 1.18883 1.04278 0.95810 1.17432 0.91685 1.25774 1.01024 0.97690 0.98260 1.69930 1.36401 1.34003 1.19787 0.86109 0.83216 0.75874 0.78423 1.21560 1.23840 1.18557 1.21898 0.97695 0.96510 0.85254 1.22383 0.86006 0.93729 0.94169 0.88845 1.86410 1.32566 1.61825 1.56455 1.21370 0.90287 1.00482 0.95555 0.89906 0.89266 0.90381 0.80693 0.82045 0.74604 0.93188 0.91564 0.95432 0.93409 0.93084 0.89927 0.93803 0.75819 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 71.23 0.71 0.14 16 2 C -0.10 -1.10 5.87 -19.90 -0.12 -1.22 16 3 C -0.06 -0.55 9.69 22.31 0.22 -0.33 16 4 C -0.16 -2.43 10.01 22.28 0.22 -2.20 16 5 C 0.11 2.83 7.29 22.67 0.17 3.00 16 6 F -0.14 -4.53 15.55 44.97 0.70 -3.83 16 7 C -0.19 -4.59 5.88 -20.05 -0.12 -4.71 16 8 C 0.55 17.22 7.73 86.74 0.67 17.89 16 9 O -0.58 -23.34 15.00 -3.93 -0.06 -23.40 16 10 N -0.70 -18.97 5.00 -445.41 -2.23 -21.20 16 11 C 0.16 5.31 2.20 45.02 0.10 5.41 16 12 H 0.08 2.92 7.58 -2.38 -0.02 2.90 16 13 C -0.13 -4.94 5.51 30.67 0.17 -4.77 16 14 C 0.13 5.81 4.19 86.36 0.36 6.18 16 15 N -0.61 -28.10 2.72 -699.12 -1.90 -30.00 16 16 C -0.23 -13.01 10.04 84.03 0.84 -12.16 16 17 H 0.07 3.82 8.05 -2.91 -0.02 3.79 16 18 C -0.03 -1.94 5.24 84.86 0.44 -1.49 16 19 N -0.95 -60.38 13.97 21.65 0.30 -60.08 16 20 Si 0.93 48.40 24.35 68.60 1.67 50.07 16 21 H -0.29 -14.71 6.70 99.48 0.67 -14.05 16 22 H -0.31 -16.19 7.11 99.48 0.71 -15.49 16 23 H -0.26 -13.00 6.45 99.48 0.64 -12.36 16 24 C 0.11 3.89 6.16 86.36 0.53 4.42 16 25 C 0.10 2.72 3.38 30.67 0.10 2.82 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 O -0.56 -15.57 12.09 -148.98 -1.80 -17.37 16 28 C -0.06 -0.94 9.18 22.52 0.21 -0.73 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.09 0.15 8.08 -2.38 -0.02 0.13 16 31 H 0.08 0.33 8.08 -2.39 -0.02 0.31 16 32 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.42 8.81 6.29 -92.71 -0.58 8.22 16 35 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.07 2.73 7.61 -2.39 -0.02 2.71 16 37 H 0.03 1.26 6.98 -2.39 -0.02 1.25 16 38 H 0.05 2.43 4.50 -2.38 -0.01 2.42 16 39 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 40 H 0.08 2.69 7.93 -2.39 -0.02 2.67 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.39 8.16 9.08 -74.06 -0.67 7.49 16 43 H 0.15 1.83 6.41 -2.91 -0.02 1.81 16 Total: -1.00 -79.87 348.90 0.90 -78.97 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -0.30 Total: 14.59 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 4.51 Total: 12.25 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -3.82 Total: -111.28 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -1.86 Total: -40.77 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.70 Total: -3.83 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 1.67 Total: 50.07 kcal Total: -79.87 0.90 -78.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090597403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.261 kcal (2) G-P(sol) polarization free energy of solvation -79.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds