Wall clock time and date at job start Fri Apr 10 2020 18:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35665 * 117.00170 * 2 1 4 4 C 1.39502 * 120.01400 * 179.97438 * 3 2 1 5 5 N 1.31947 * 120.11329 * 180.02562 * 4 3 2 6 6 C 1.32196 * 120.14476 * 359.73686 * 5 4 3 7 7 C 1.39237 * 120.02144 * 0.51841 * 6 5 4 8 8 C 1.48127 * 120.05767 * 179.75637 * 7 6 5 9 9 O 1.21516 * 119.99774 * 359.72815 * 8 7 6 10 10 N 1.34773 * 120.00022 * 179.72220 * 8 7 6 11 11 C 1.46500 * 119.99736 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46636 * 324.97455 * 11 10 8 13 13 C 1.53045 * 109.45979 * 84.93688 * 11 10 8 14 14 C 1.52752 * 109.38410 * 181.25875 * 13 11 10 15 15 N 1.46924 * 109.01207 * 305.58752 * 14 13 11 16 16 C 1.36937 * 120.63400 * 233.59056 * 15 14 13 17 17 H 1.07998 * 120.00713 * 152.17231 * 16 15 14 18 18 C 1.38819 * 119.99435 * 331.89306 * 16 15 14 19 19 N 1.31617 * 120.00072 * 343.16064 * 18 16 15 20 20 Si 1.86804 * 119.99834 * 163.16258 * 18 16 15 21 21 H 1.48498 * 109.47194 * 89.99883 * 20 18 16 22 22 H 1.48497 * 109.47198 * 210.00044 * 20 18 16 23 23 H 1.48503 * 109.46981 * 329.99992 * 20 18 16 24 24 C 1.46930 * 118.74013 * 53.30818 * 15 14 13 25 25 C 1.53042 * 109.45939 * 205.00160 * 11 10 8 26 26 H 1.08998 * 109.49857 * 58.67004 * 25 11 10 27 27 O 1.42904 * 109.49828 * 298.56722 * 25 11 10 28 28 N 1.32163 * 120.01207 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.46869 * 299.99620 * 1 2 3 30 30 H 1.08992 * 109.47428 * 59.99361 * 1 2 3 31 31 H 1.08999 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.08007 * 119.94243 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.99073 * 180.25348 * 6 5 4 34 34 H 0.97002 * 120.00508 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.49472 * 301.33851 * 13 11 10 36 36 H 1.09001 * 109.49667 * 61.43158 * 13 11 10 37 37 H 1.09003 * 109.51160 * 185.70234 * 14 13 11 38 38 H 1.09000 * 109.43660 * 65.42367 * 14 13 11 39 39 H 0.96998 * 119.99624 * 179.97438 * 19 18 16 40 40 H 1.08992 * 109.58438 * 66.43025 * 24 15 14 41 41 H 1.09000 * 109.58891 * 186.86165 * 24 15 14 42 42 H 0.96704 * 113.99932 * 180.16320 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4380 1.2821 0.0005 5 7 4.0391 2.4567 0.0011 6 6 3.3239 3.5684 -0.0042 7 6 1.9331 3.5021 0.0006 8 6 1.1309 4.7473 0.0002 9 8 1.6866 5.8280 0.0006 10 7 -0.2152 4.6818 -0.0008 11 6 -1.0085 5.9134 -0.0006 12 1 -0.4982 6.6741 0.5900 13 6 -1.1766 6.4118 -1.4379 14 6 -1.9772 7.7127 -1.4330 15 7 -3.2420 7.4936 -0.7183 16 6 -4.4390 7.8025 -1.3074 17 1 -5.3336 7.2668 -1.0261 18 6 -4.5035 8.8082 -2.2621 19 7 -3.5220 9.6786 -2.3684 20 14 -5.9834 8.9261 -3.3959 21 1 -7.0162 9.7925 -2.7732 22 1 -5.5657 9.5098 -4.6959 23 1 -6.5447 7.5696 -3.6199 24 6 -3.1986 6.9309 0.6383 25 6 -2.3845 5.6335 0.6081 26 1 -2.2632 5.2565 1.6236 27 8 -3.0676 4.6601 -0.1844 28 7 1.3253 2.3173 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0276 0.0005 32 1 4.0255 0.3758 0.0005 33 1 3.8184 4.5285 -0.0079 34 1 -0.6589 3.8191 -0.0008 35 1 -0.1955 6.5886 -1.8786 36 1 -1.7090 5.6620 -2.0230 37 1 -2.1851 8.0161 -2.4591 38 1 -1.4028 8.4902 -0.9293 39 1 -3.5669 10.3811 -3.0358 40 1 -2.7259 7.6432 1.3144 41 1 -4.2122 6.7185 0.9784 42 1 -3.9497 4.4357 0.1423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090620073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:20 Heat of formation + Delta-G solvation = -67.545581 kcal Electronic energy + Delta-G solvation = -27582.209179 eV Core-core repulsion = 23562.938157 eV Total energy + Delta-G solvation = -4019.271022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60550 -41.04223 -39.69203 -39.17294 -36.60695 -35.92567 -35.32059 -33.65713 -32.40921 -31.63781 -30.40586 -28.64713 -27.38366 -26.17974 -24.87887 -24.03475 -23.66127 -21.96964 -21.17491 -19.72546 -19.43485 -18.95729 -17.92933 -17.76221 -17.52711 -17.42888 -17.21282 -16.55546 -16.21816 -15.94889 -15.56841 -15.52080 -15.39338 -15.05770 -14.93331 -14.50520 -14.11010 -13.79952 -13.67437 -13.19377 -13.01847 -12.78302 -12.74438 -12.69285 -12.62335 -12.45652 -12.14865 -12.11106 -12.06411 -11.89679 -11.72250 -11.37191 -10.89888 -10.51450 -10.46587 -10.16315 -9.89255 -8.67049 -7.86196 -5.30835 -0.80691 -0.13052 1.46817 1.49538 1.52319 1.58431 1.76160 1.83907 2.51687 2.55770 2.67673 3.08819 3.27247 3.29276 3.37164 3.62060 3.77945 3.83633 3.98023 4.02129 4.25058 4.31079 4.35266 4.41898 4.42709 4.69442 4.72198 4.75854 4.86237 4.91369 4.92545 4.99236 5.10690 5.36099 5.46279 5.63874 5.69346 5.78387 5.88664 6.31231 6.38246 6.51237 6.95147 7.00957 7.14745 7.84407 8.36568 9.20782 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.003036 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.853182 B = 9220.085754 C = 9829.424113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.296 6.296 3 C 0.271 3.729 4 C 0.084 3.916 5 N -0.415 5.415 6 C 0.065 3.935 7 C 0.063 3.937 8 C 0.568 3.432 9 O -0.557 6.557 10 N -0.685 5.685 11 C 0.164 3.836 12 H 0.083 0.917 13 C -0.126 4.126 14 C 0.184 3.816 15 N -0.598 5.598 16 C -0.253 4.253 17 H 0.074 0.926 18 C -0.055 4.055 19 N -0.938 5.938 20 Si 0.967 3.033 21 H -0.284 1.284 22 H -0.298 1.298 23 H -0.269 1.269 24 C 0.112 3.888 25 C 0.100 3.900 26 H 0.085 0.915 27 O -0.564 6.564 28 N -0.479 5.479 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.130 0.870 32 H 0.219 0.781 33 H 0.189 0.811 34 H 0.418 0.582 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.054 0.946 38 H -0.005 1.005 39 H 0.248 0.752 40 H 0.026 0.974 41 H 0.077 0.923 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.076 -21.765 7.908 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.200 6.200 3 C 0.084 3.916 4 C -0.083 4.083 5 N -0.129 5.129 6 C -0.092 4.092 7 C -0.076 4.076 8 C 0.353 3.647 9 O -0.435 6.435 10 N -0.335 5.335 11 C 0.060 3.940 12 H 0.101 0.899 13 C -0.166 4.166 14 C 0.057 3.943 15 N -0.321 5.321 16 C -0.384 4.384 17 H 0.091 0.909 18 C -0.250 4.250 19 N -0.584 5.584 20 Si 0.795 3.205 21 H -0.211 1.211 22 H -0.225 1.225 23 H -0.194 1.194 24 C -0.015 4.015 25 C 0.038 3.962 26 H 0.103 0.897 27 O -0.371 6.371 28 N -0.213 5.213 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.236 0.764 33 H 0.206 0.794 34 H 0.256 0.744 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.013 0.987 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.096 0.904 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 10.049 -21.047 7.477 24.492 hybrid contribution -1.691 0.554 -0.546 1.862 sum 8.358 -20.492 6.931 23.191 Atomic orbital electron populations 1.23219 0.75259 1.05469 1.02594 1.86298 1.24624 1.22080 1.87041 1.21224 0.91650 0.85380 0.93323 1.23879 0.89637 0.98480 0.96258 1.68732 1.37926 0.97926 1.08275 1.23715 0.90320 0.99281 0.95885 1.21646 0.93505 0.90957 1.01442 1.17972 0.82736 0.87258 0.76776 1.90814 1.71850 1.29336 1.51506 1.45849 1.04980 1.10835 1.71791 1.20895 0.90085 0.86022 0.97000 0.89898 1.22138 0.98791 0.99181 0.96509 1.20370 0.85200 0.91472 0.97226 1.44090 1.02267 1.73576 1.12173 1.19502 0.88081 1.11930 1.18851 0.90879 1.25817 1.00392 0.95415 1.03413 1.70193 1.35265 1.16521 1.36416 0.85291 0.79242 0.77864 0.78108 1.21073 1.22469 1.19375 1.21800 0.99510 0.93451 0.86692 1.22364 0.90331 0.89797 0.93671 0.89713 1.86420 1.34446 1.59811 1.56429 1.67876 1.40561 0.98182 1.14670 0.91960 0.92502 0.85156 0.76413 0.79429 0.74423 0.93521 0.92397 0.92761 0.98654 0.94281 0.95620 0.90428 0.76014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.39 113.37 1.18 1.52 16 2 O -0.30 -4.47 10.49 -89.81 -0.94 -5.41 16 3 C 0.27 4.91 7.50 84.95 0.64 5.55 16 4 C 0.08 1.30 11.18 84.98 0.95 2.25 16 5 N -0.41 -8.24 10.48 -193.71 -2.03 -10.27 16 6 C 0.06 1.47 10.76 84.88 0.91 2.38 16 7 C 0.06 1.58 6.75 41.81 0.28 1.86 16 8 C 0.57 17.34 7.78 86.87 0.68 18.02 16 9 O -0.56 -20.39 16.00 -3.77 -0.06 -20.45 16 10 N -0.68 -20.07 5.04 -445.01 -2.24 -22.32 16 11 C 0.16 5.64 2.20 45.02 0.10 5.74 16 12 H 0.08 3.08 7.58 -2.39 -0.02 3.06 16 13 C -0.13 -5.22 5.50 30.53 0.17 -5.06 16 14 C 0.18 9.23 5.28 86.22 0.45 9.68 16 15 N -0.60 -29.21 2.94 -699.93 -2.06 -31.27 16 16 C -0.25 -13.55 9.58 84.04 0.81 -12.74 16 17 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 18 C -0.06 -3.09 4.92 84.86 0.42 -2.67 16 19 N -0.94 -56.14 11.18 21.65 0.24 -55.90 16 20 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 C 0.11 4.21 6.16 86.36 0.53 4.74 16 25 C 0.10 3.00 3.38 30.68 0.10 3.10 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 27 O -0.56 -16.40 12.09 -148.98 -1.80 -18.20 16 28 N -0.48 -10.58 8.60 -297.48 -2.56 -13.14 16 29 H 0.06 0.75 8.11 -2.38 -0.02 0.73 16 30 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 31 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.19 4.07 7.64 -2.91 -0.02 4.05 16 34 H 0.42 10.95 7.60 -92.71 -0.70 10.25 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.50 7.61 -2.39 -0.02 2.48 16 37 H 0.05 3.10 6.05 -2.39 -0.01 3.09 16 38 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 2.66 7.93 -2.39 -0.02 2.64 16 42 H 0.39 8.38 9.08 -74.05 -0.67 7.71 16 Total: -1.00 -70.83 353.78 -2.51 -73.34 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.30 Total: 22.44 kcal Atomic # 6 Polarization: 27.15 SS G_CDS: 7.22 Total: 34.36 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -8.65 Total: -132.89 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -2.80 Total: -44.06 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.83 -2.51 -73.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090620073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.796 kcal (2) G-P(sol) polarization free energy of solvation -70.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds