Wall clock time and date at job start Fri Apr 10 2020 18:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35291 * 117.00422 * 2 1 4 4 N 1.32466 * 119.02846 * 180.02562 * 3 2 1 5 5 C 1.32013 * 120.91873 * 180.02562 * 4 3 2 6 6 C 1.40056 * 118.98860 * 0.02562 * 5 4 3 7 7 C 1.47628 * 120.88481 * 179.97438 * 6 5 4 8 8 O 1.21584 * 120.00047 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00188 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00212 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.44533 * 324.96560 * 10 9 7 12 12 C 1.53038 * 109.46250 * 84.93068 * 10 9 7 13 13 C 1.53190 * 109.31011 * 58.65406 * 12 10 9 14 14 N 1.46928 * 108.77438 * 54.63825 * 13 12 10 15 15 C 1.36942 * 120.63206 * 126.36773 * 14 13 12 16 16 H 1.08003 * 119.99786 * 207.70104 * 15 14 13 17 17 C 1.38813 * 119.99883 * 27.69875 * 15 14 13 18 18 N 1.31615 * 120.00126 * 17.35048 * 17 15 14 19 19 Si 1.86797 * 119.99971 * 197.35306 * 17 15 14 20 20 H 1.48509 * 109.47282 * 59.99679 * 19 17 15 21 21 H 1.48499 * 109.47386 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46997 * 300.00112 * 19 17 15 23 23 C 1.46930 * 118.73802 * 306.38914 * 14 13 12 24 24 C 1.53043 * 109.45899 * 205.00243 * 10 9 7 25 25 H 1.08998 * 109.49125 * 181.39098 * 24 10 9 26 26 O 1.42900 * 109.52501 * 61.31245 * 24 10 9 27 27 C 1.40053 * 118.23499 * 0.24768 * 6 5 4 28 28 N 1.32016 * 118.98757 * 359.49905 * 27 6 5 29 29 H 1.09007 * 109.46972 * 59.99905 * 1 2 3 30 30 H 1.09000 * 109.46953 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47094 * 299.99893 * 1 2 3 32 32 H 1.08002 * 120.50937 * 179.97438 * 5 4 3 33 33 H 0.97002 * 120.00210 * 0.02562 * 9 7 6 34 34 H 1.09007 * 109.49663 * 298.70990 * 12 10 9 35 35 H 1.08991 * 109.49894 * 178.61040 * 12 10 9 36 36 H 1.08999 * 109.59364 * 294.85073 * 13 12 10 37 37 H 1.09006 * 109.58836 * 174.42272 * 13 12 10 38 38 H 0.97004 * 119.99984 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.58386 * 293.82034 * 23 14 13 40 40 H 1.09002 * 109.58128 * 173.39528 * 23 14 13 41 41 H 0.96702 * 113.99674 * 180.08341 * 26 24 10 42 42 H 1.07997 * 120.50956 * 179.72354 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 3.3670 1.2522 -0.0005 5 6 4.0049 2.4080 0.0000 6 6 3.2603 3.5942 0.0016 7 6 3.9305 4.9096 0.0028 8 8 5.1447 4.9733 0.0018 9 7 3.1965 6.0399 0.0038 10 6 3.8615 7.3453 0.0044 11 1 4.7764 7.2862 0.5940 12 6 4.2060 7.7427 -1.4328 13 6 2.9219 7.7909 -2.2667 14 7 1.9626 8.6868 -1.6064 15 6 1.3903 9.7243 -2.2928 16 1 1.0677 10.6090 -1.7639 17 6 1.2249 9.6390 -3.6684 18 7 1.2898 8.4690 -4.2677 19 14 0.9102 11.1846 -4.6690 20 1 2.0492 12.1229 -4.5021 21 1 0.7697 10.8260 -6.1031 22 1 -0.3391 11.8340 -4.1970 23 6 1.6294 8.4485 -0.1953 24 6 2.9280 8.3929 0.6154 25 1 3.4127 9.3689 0.5935 26 8 2.6314 8.0378 1.9674 27 6 1.8630 3.4994 0.0080 28 7 1.3028 2.3040 0.0021 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 5.0845 2.4384 0.0000 33 1 2.2278 5.9892 0.0042 34 1 4.8895 7.0084 -1.8594 35 1 4.6786 8.7248 -1.4353 36 1 2.4962 6.7902 -2.3405 37 1 3.1478 8.1686 -3.2640 38 1 1.1746 8.4094 -5.2291 39 1 1.0984 7.5014 -0.1002 40 1 1.0025 9.2601 0.1741 41 1 2.0420 8.6588 2.4169 42 1 1.2530 4.3906 0.0139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090698565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:39 Heat of formation + Delta-G solvation = -61.286557 kcal Electronic energy + Delta-G solvation = -27743.391298 eV Core-core repulsion = 23724.391687 eV Total energy + Delta-G solvation = -4018.999611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.57495 -41.15424 -39.67331 -38.98365 -36.90627 -35.76813 -35.09644 -33.72441 -32.86789 -31.56340 -30.13271 -28.65898 -27.20858 -25.96278 -25.42637 -23.91921 -23.58553 -22.39786 -20.43440 -19.98384 -19.32233 -19.13758 -18.53286 -17.92716 -17.61419 -16.89854 -16.70222 -16.24666 -16.21281 -15.86057 -15.66184 -15.52015 -15.47813 -15.03938 -14.76057 -14.63299 -14.34984 -13.81718 -13.54902 -13.22224 -13.10597 -12.99558 -12.94079 -12.69641 -12.43118 -12.33822 -12.21248 -12.18408 -11.97303 -11.82112 -11.29925 -11.06485 -10.96695 -10.50868 -10.48399 -10.36301 -10.01088 -8.68716 -7.87656 -5.32849 -0.66626 -0.19541 1.38478 1.49292 1.52365 1.57728 1.72173 2.05040 2.51220 2.60680 2.73975 3.16941 3.26222 3.29332 3.47809 3.62543 3.68276 3.79136 3.95474 4.09314 4.27346 4.34344 4.36689 4.41813 4.49227 4.56315 4.68024 4.71156 4.85477 4.90511 4.98224 5.07360 5.16299 5.41702 5.43443 5.48649 5.65205 5.73400 5.85024 6.37292 6.43486 6.74741 6.92047 7.10020 7.14487 7.83864 8.33799 9.18045 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.003512 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.884978 B = 7970.376333 C = 8852.790749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.505 3.495 4 N -0.544 5.544 5 C 0.251 3.749 6 C -0.283 4.283 7 C 0.577 3.423 8 O -0.569 6.569 9 N -0.694 5.694 10 C 0.170 3.830 11 H 0.082 0.918 12 C -0.141 4.141 13 C 0.183 3.817 14 N -0.601 5.601 15 C -0.264 4.264 16 H 0.072 0.928 17 C -0.044 4.044 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.280 1.280 21 H -0.299 1.299 22 H -0.275 1.275 23 C 0.117 3.883 24 C 0.095 3.905 25 H 0.072 0.928 26 O -0.570 6.570 27 C 0.234 3.766 28 N -0.570 5.570 29 H 0.064 0.936 30 H 0.136 0.864 31 H 0.069 0.931 32 H 0.204 0.796 33 H 0.405 0.595 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.005 0.995 37 H 0.053 0.947 38 H 0.249 0.751 39 H 0.028 0.972 40 H 0.069 0.931 41 H 0.396 0.604 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 -9.513 11.535 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.197 6.197 3 C 0.204 3.796 4 N -0.269 5.269 5 C 0.084 3.916 6 C -0.292 4.292 7 C 0.364 3.636 8 O -0.450 6.450 9 N -0.345 5.345 10 C 0.065 3.935 11 H 0.100 0.900 12 C -0.181 4.181 13 C 0.057 3.943 14 N -0.326 5.326 15 C -0.394 4.394 16 H 0.090 0.910 17 C -0.240 4.240 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.200 1.200 23 C -0.009 4.009 24 C 0.034 3.966 25 H 0.090 0.910 26 O -0.377 6.377 27 C 0.067 3.933 28 N -0.299 5.299 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.088 0.912 32 H 0.220 0.780 33 H 0.243 0.757 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.246 0.754 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.247 -11.237 11.249 15.902 hybrid contribution -0.844 2.049 -0.944 2.409 sum -1.091 -9.187 10.305 13.849 Atomic orbital electron populations 1.23383 0.73227 1.05901 1.03351 1.86070 1.25763 1.22086 1.85790 1.21244 0.86538 0.85558 0.86219 1.67771 1.07714 1.30273 1.21170 1.23589 1.01845 0.83865 0.82265 1.21484 0.96538 0.96085 1.15046 1.17718 0.86461 0.83632 0.75817 1.90752 1.14276 1.87654 1.52269 1.45762 1.10543 1.05061 1.73087 1.20773 0.95674 0.81316 0.95763 0.89994 1.22403 0.99196 1.01286 0.95234 1.20506 0.86783 0.91719 0.95272 1.44165 1.47764 1.33364 1.07310 1.19467 1.34785 0.94641 0.90480 0.91013 1.25701 1.00691 0.98604 0.99014 1.70157 1.54718 1.23619 1.09098 0.85436 0.78314 0.79948 0.77286 1.20581 1.22573 1.20041 1.21703 0.94858 0.99485 0.84890 1.22346 0.95932 0.96531 0.81811 0.91048 1.86452 1.71569 1.55256 1.24451 1.23526 0.91374 0.95137 0.83283 1.68164 1.40753 0.98968 1.22017 0.91697 0.84564 0.91187 0.77962 0.75743 0.92048 0.91038 0.97663 0.92906 0.94225 0.95402 0.91217 0.75416 0.78883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.35 113.37 1.17 1.70 16 2 O -0.30 -6.94 10.55 -85.76 -0.90 -7.84 16 3 C 0.51 13.41 8.48 180.48 1.53 14.94 16 4 N -0.54 -14.93 10.45 -312.41 -3.26 -18.19 16 5 C 0.25 6.39 10.87 85.11 0.93 7.32 16 6 C -0.28 -7.41 5.90 -19.92 -0.12 -7.53 16 7 C 0.58 17.54 7.74 86.72 0.67 18.21 16 8 O -0.57 -20.24 16.10 -3.98 -0.06 -20.30 16 9 N -0.69 -20.44 4.11 -445.47 -1.83 -22.27 16 10 C 0.17 5.36 2.47 45.02 0.11 5.47 16 11 H 0.08 2.68 7.58 -2.39 -0.02 2.66 16 12 C -0.14 -5.13 5.77 30.67 0.18 -4.95 16 13 C 0.18 8.11 5.05 86.36 0.44 8.55 16 14 N -0.60 -26.58 3.00 -699.09 -2.09 -28.68 16 15 C -0.26 -13.19 9.59 84.03 0.81 -12.38 16 16 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16 17 C -0.04 -2.30 4.91 84.86 0.42 -1.89 16 18 N -0.93 -52.08 11.19 21.65 0.24 -51.84 16 19 Si 0.96 42.50 29.59 68.60 2.03 44.53 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C 0.12 3.94 5.84 86.36 0.50 4.45 16 24 C 0.09 2.72 3.36 30.67 0.10 2.82 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 O -0.57 -13.61 13.21 -148.98 -1.97 -15.58 16 27 C 0.23 5.57 10.81 85.11 0.92 6.49 16 28 N -0.57 -14.23 9.19 -312.41 -2.87 -17.10 16 29 H 0.06 0.99 8.09 -2.38 -0.02 0.98 16 30 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 32 H 0.20 4.45 7.74 -2.91 -0.02 4.43 16 33 H 0.41 11.00 4.99 -92.71 -0.46 10.54 16 34 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.01 0.25 7.74 -2.39 -0.02 0.23 16 37 H 0.05 2.75 6.04 -2.38 -0.01 2.74 16 38 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 39 H 0.03 0.92 6.64 -2.39 -0.02 0.90 16 40 H 0.07 2.22 7.93 -2.39 -0.02 2.20 16 41 H 0.40 5.99 9.08 -74.06 -0.67 5.32 16 42 H 0.19 3.77 6.53 -2.91 -0.02 3.75 16 Total: -1.00 -67.22 349.04 -3.12 -70.34 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -0.05 Total: 23.75 kcal Atomic # 6 Polarization: 35.53 SS G_CDS: 7.66 Total: 43.19 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -9.82 Total: -138.08 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -2.94 Total: -43.72 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -67.22 -3.12 -70.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090698565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.050 kcal (2) G-P(sol) polarization free energy of solvation -67.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds