Wall clock time and date at job start Fri Apr 10 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86793 * 120.00709 * 2 1 4 4 H 1.48497 * 109.47739 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47221 * 300.00301 * 3 2 1 6 6 H 1.48507 * 109.47021 * 59.99663 * 3 2 1 7 7 C 1.37884 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99680 * 0.02562 * 7 2 1 10 10 C 1.53492 * 114.20705 * 179.97438 * 9 7 2 11 11 N 1.47064 * 87.98772 * 139.65253 * 10 9 7 12 12 C 1.34783 * 136.05947 * 152.84493 * 11 10 9 13 13 O 1.21284 * 119.99742 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00102 * 180.02562 * 12 11 10 15 15 H 1.08992 * 115.59051 * 34.17820 * 14 12 11 16 16 C 1.53204 * 117.52137 * 248.34886 * 14 12 11 17 17 C 1.52096 * 117.52139 * 179.97438 * 14 12 11 18 18 C 1.52615 * 129.80686 * 348.35731 * 17 14 12 19 19 N 1.47252 * 87.69127 * 195.56603 * 18 17 14 20 20 C 1.34777 * 135.89689 * 206.22599 * 19 18 17 21 21 O 1.21279 * 120.00025 * 0.02562 * 20 19 18 22 22 C 1.50696 * 119.99769 * 180.02562 * 20 19 18 23 23 H 1.09004 * 115.56587 * 34.31293 * 22 20 19 24 24 C 1.53000 * 117.50175 * 248.62488 * 22 20 19 25 25 C 1.52997 * 60.00347 * 252.51187 * 24 22 20 26 26 H 1.09001 * 117.51673 * 252.52204 * 25 24 22 27 27 F 1.39899 * 117.50367 * 107.48538 * 25 24 22 28 28 C 1.47243 * 88.19954 * 26.48896 * 19 18 17 29 29 C 1.47067 * 87.88612 * 333.10173 * 11 10 9 30 30 H 0.97006 * 119.99503 * 0.02562 * 1 2 3 31 31 H 1.09001 * 113.28443 * 46.93164 * 9 7 2 32 32 H 1.09002 * 113.46838 * 24.87455 * 10 9 7 33 33 H 1.08999 * 113.52362 * 254.44521 * 10 9 7 34 34 H 1.09002 * 117.52242 * 145.15919 * 16 14 12 35 35 H 1.09002 * 117.52497 * 0.02562 * 16 14 12 36 36 H 1.09000 * 113.51823 * 80.86205 * 18 17 14 37 37 H 1.08997 * 113.51461 * 310.26836 * 18 17 14 38 38 H 1.09002 * 117.49696 * 0.02562 * 24 22 20 39 39 H 1.09002 * 117.50343 * 145.02291 * 24 22 20 40 40 H 1.09007 * 113.51739 * 88.21886 * 28 19 18 41 41 H 1.09009 * 113.51474 * 218.80335 * 28 19 18 42 42 H 1.09001 * 113.46811 * 141.67876 * 29 11 10 43 43 H 1.08996 * 113.46728 * 272.11767 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.1484 -3.7443 0.0005 11 7 1.2096 -4.3574 0.9521 12 6 0.8342 -5.6113 1.2736 13 8 1.3276 -6.5583 0.6986 14 6 -0.1996 -5.8366 2.3468 15 1 -0.9827 -5.0813 2.4120 16 6 0.2662 -6.4883 3.6527 17 6 -0.5818 -7.2742 2.6638 18 6 -0.2607 -8.5601 1.9072 19 7 -1.3164 -9.2173 2.6958 20 6 -1.5784 -10.4746 3.1043 21 8 -0.8248 -11.3777 2.8088 22 6 -2.8079 -10.7583 3.9283 23 1 -3.6818 -10.1504 3.6940 24 6 -2.6012 -11.1647 5.3888 25 6 -3.0497 -12.2058 4.3613 26 1 -4.0826 -12.5502 4.4113 27 9 -2.1125 -13.1646 3.9618 28 6 -1.9643 -7.9027 2.8376 29 6 0.8559 -3.0000 1.3939 30 1 -0.4850 0.8401 -0.0004 31 1 0.4436 -2.5306 -0.7312 32 1 3.1381 -3.5659 0.4211 33 1 2.1855 -4.2539 -0.9623 34 1 -0.2107 -6.1615 4.5768 35 1 1.3202 -6.7535 3.7354 36 1 0.7381 -8.9464 2.1103 37 1 -0.4842 -8.5051 0.8418 38 1 -1.5760 -11.2264 5.7538 39 1 -3.3391 -10.8242 6.1153 40 1 -2.6539 -7.6679 2.0267 41 1 -2.3986 -7.7360 3.8235 42 1 -0.2048 -2.8775 1.6132 43 1 1.4977 -2.6214 2.1893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271104778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:43 Heat of formation + Delta-G solvation = 21.935311 kcal Electronic energy + Delta-G solvation = -26234.134427 eV Core-core repulsion = 22198.823626 eV Total energy + Delta-G solvation = -4035.310801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.77782 -40.92366 -39.55794 -38.63197 -37.05957 -35.99202 -34.57196 -32.74462 -29.53196 -28.55515 -26.42599 -25.63831 -25.04298 -23.94505 -23.28493 -22.80416 -20.58215 -19.72373 -18.77142 -18.16089 -17.82208 -17.02029 -16.65593 -16.32642 -16.21480 -15.95860 -15.17322 -14.92947 -14.86277 -14.63161 -14.49199 -14.18378 -14.03527 -13.45669 -13.18325 -13.11005 -12.95906 -12.57563 -12.42592 -12.28008 -11.99017 -11.59261 -11.39451 -11.02697 -10.92124 -10.88585 -10.83002 -10.77046 -10.52592 -10.42431 -10.38036 -9.83919 -9.65975 -9.27925 -9.04484 -8.87547 -8.64735 -7.93681 -6.24391 -4.29766 2.16843 2.44253 2.87377 3.18756 3.18917 3.27611 3.30000 3.34424 3.67096 3.69840 3.99181 4.08139 4.13952 4.28848 4.42417 4.54428 4.59158 4.70728 5.02670 5.06435 5.07788 5.12136 5.17727 5.24083 5.31233 5.47990 5.56309 5.56444 5.61742 5.76065 5.82204 5.87494 6.00359 6.11768 6.20400 6.38781 6.50759 6.58295 6.76179 7.49552 7.52854 7.73789 7.95988 8.11876 8.44159 8.68297 8.74871 9.37471 10.85416 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.039831 B = 0.002055 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.793788 B =13621.857510 C =13968.885649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.100 3.900 11 N -0.638 5.638 12 C 0.558 3.442 13 O -0.561 6.561 14 C -0.146 4.146 15 H 0.129 0.871 16 C -0.109 4.109 17 C -0.156 4.156 18 C 0.162 3.838 19 N -0.644 5.644 20 C 0.569 3.431 21 O -0.524 6.524 22 C -0.203 4.203 23 H 0.136 0.864 24 C -0.164 4.164 25 C 0.052 3.948 26 H 0.142 0.858 27 F -0.164 7.164 28 C 0.142 3.858 29 C 0.100 3.900 30 H 0.264 0.736 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 -14.543 11.695 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.014 3.986 10 C -0.022 4.022 11 N -0.371 5.371 12 C 0.347 3.653 13 O -0.442 6.442 14 C -0.168 4.168 15 H 0.147 0.853 16 C -0.147 4.147 17 C -0.158 4.158 18 C 0.041 3.959 19 N -0.379 5.379 20 C 0.357 3.643 21 O -0.400 6.400 22 C -0.224 4.224 23 H 0.154 0.846 24 C -0.202 4.202 25 C 0.016 3.984 26 H 0.159 0.841 27 F -0.144 7.144 28 C 0.019 3.981 29 C -0.022 4.022 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.178 -15.892 11.339 21.573 hybrid contribution 0.294 1.215 0.002 1.250 sum -8.884 -14.677 11.342 20.567 Atomic orbital electron populations 1.69955 1.06076 1.27062 1.49193 1.25030 0.94881 0.99447 0.94208 0.86477 0.80222 0.83257 0.77728 1.19540 1.20862 1.20889 1.20947 0.93076 0.89508 1.51948 0.91755 1.20309 0.94768 0.91199 0.92290 1.23364 0.94361 0.93068 0.91361 1.49922 1.42204 1.04774 1.40165 1.18998 0.82289 0.81336 0.82636 1.90647 1.58027 1.40859 1.54631 1.22054 1.01441 0.95597 0.97688 0.85346 1.22759 1.00305 0.99248 0.92344 1.22002 0.97589 0.92026 1.04144 1.22258 0.92419 0.85605 0.95657 1.49506 1.28603 1.05902 1.53930 1.18889 0.85502 0.80087 0.79783 1.90794 1.49202 1.42902 1.57089 1.22916 0.99890 1.00711 0.98905 0.84616 1.23678 1.05071 1.00768 0.90677 1.22018 0.92525 0.82108 1.01776 0.84103 1.92908 1.66829 1.63702 1.90955 1.22505 0.93932 0.79160 1.02454 1.23567 0.99780 0.76733 1.02165 0.92667 0.91377 0.90835 0.92412 0.87221 0.87764 0.90006 0.88648 0.87084 0.86067 0.88764 0.89894 0.92173 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.30 13.26 55.43 0.74 -22.56 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.52 -12.70 8.83 -34.44 -0.30 -13.00 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.03 0.75 3.77 -91.39 -0.34 0.41 16 10 C 0.10 2.02 8.19 -8.51 -0.07 1.95 16 11 N -0.64 -12.22 3.69 -185.39 -0.68 -12.90 16 12 C 0.56 10.07 7.86 -10.98 -0.09 9.98 16 13 O -0.56 -11.60 16.08 5.55 0.09 -11.51 16 14 C -0.15 -1.94 6.02 -92.13 -0.55 -2.49 16 15 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 16 C -0.11 -1.20 10.24 -27.06 -0.28 -1.48 16 17 C -0.16 -1.82 3.15 -155.68 -0.49 -2.31 16 18 C 0.16 2.23 7.12 -7.63 -0.05 2.18 16 19 N -0.64 -7.79 3.69 -184.37 -0.68 -8.47 16 20 C 0.57 7.51 7.86 -10.99 -0.09 7.42 16 21 O -0.52 -9.30 15.92 5.56 0.09 -9.22 16 22 C -0.20 -1.70 6.01 -91.77 -0.55 -2.25 16 23 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.16 -1.07 10.22 -26.73 -0.27 -1.35 16 25 C 0.05 0.42 7.82 -26.73 -0.21 0.21 16 26 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 27 F -0.16 -2.13 15.71 2.25 0.04 -2.10 16 28 C 0.14 1.27 8.44 -7.51 -0.06 1.21 16 29 C 0.10 1.96 7.98 -8.64 -0.07 1.89 16 30 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.07 1.68 8.11 -51.93 -0.42 1.25 16 32 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -32.26 374.42 -9.63 -41.89 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.30 Total: 0.76 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -3.53 Total: 3.98 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.63 Total: -43.93 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.18 Total: -20.72 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.26 -9.63 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271104778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.825 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds