Wall clock time and date at job start Fri Apr 10 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86793 * 120.00709 * 2 1 4 4 H 1.48497 * 109.47739 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47221 * 300.00301 * 3 2 1 6 6 H 1.48507 * 109.47021 * 59.99663 * 3 2 1 7 7 C 1.37884 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99680 * 0.02562 * 7 2 1 10 10 C 1.53492 * 114.20705 * 179.97438 * 9 7 2 11 11 N 1.47064 * 87.98772 * 139.65253 * 10 9 7 12 12 C 1.34783 * 136.05947 * 152.84493 * 11 10 9 13 13 O 1.21284 * 119.99742 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00102 * 180.02562 * 12 11 10 15 15 H 1.08992 * 115.59051 * 34.17820 * 14 12 11 16 16 C 1.53204 * 117.52137 * 248.34886 * 14 12 11 17 17 C 1.52096 * 117.52139 * 179.97438 * 14 12 11 18 18 C 1.52615 * 129.80686 * 348.35731 * 17 14 12 19 19 N 1.47252 * 87.69127 * 195.56603 * 18 17 14 20 20 C 1.34777 * 135.89689 * 206.22599 * 19 18 17 21 21 O 1.21279 * 120.00025 * 0.02562 * 20 19 18 22 22 C 1.50696 * 119.99769 * 180.02562 * 20 19 18 23 23 H 1.09004 * 115.56587 * 34.31293 * 22 20 19 24 24 C 1.53000 * 117.50175 * 248.62488 * 22 20 19 25 25 C 1.52997 * 60.00347 * 252.51187 * 24 22 20 26 26 H 1.09001 * 117.51673 * 252.52204 * 25 24 22 27 27 F 1.39899 * 117.50367 * 107.48538 * 25 24 22 28 28 C 1.47243 * 88.19954 * 26.48896 * 19 18 17 29 29 C 1.47067 * 87.88612 * 333.10173 * 11 10 9 30 30 H 0.97006 * 119.99503 * 0.02562 * 1 2 3 31 31 H 1.09001 * 113.28443 * 46.93164 * 9 7 2 32 32 H 1.09002 * 113.46838 * 24.87455 * 10 9 7 33 33 H 1.08999 * 113.52362 * 254.44521 * 10 9 7 34 34 H 1.09002 * 117.52242 * 145.15919 * 16 14 12 35 35 H 1.09002 * 117.52497 * 0.02562 * 16 14 12 36 36 H 1.09000 * 113.51823 * 80.86205 * 18 17 14 37 37 H 1.08997 * 113.51461 * 310.26836 * 18 17 14 38 38 H 1.09002 * 117.49696 * 0.02562 * 24 22 20 39 39 H 1.09002 * 117.50343 * 145.02291 * 24 22 20 40 40 H 1.09007 * 113.51739 * 88.21886 * 28 19 18 41 41 H 1.09009 * 113.51474 * 218.80335 * 28 19 18 42 42 H 1.09001 * 113.46811 * 141.67876 * 29 11 10 43 43 H 1.08996 * 113.46728 * 272.11767 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.1484 -3.7443 0.0005 11 7 1.2096 -4.3574 0.9521 12 6 0.8342 -5.6113 1.2736 13 8 1.3276 -6.5583 0.6986 14 6 -0.1996 -5.8366 2.3468 15 1 -0.9827 -5.0813 2.4120 16 6 0.2662 -6.4883 3.6527 17 6 -0.5818 -7.2742 2.6638 18 6 -0.2607 -8.5601 1.9072 19 7 -1.3164 -9.2173 2.6958 20 6 -1.5784 -10.4746 3.1043 21 8 -0.8248 -11.3777 2.8088 22 6 -2.8079 -10.7583 3.9283 23 1 -3.6818 -10.1504 3.6940 24 6 -2.6012 -11.1647 5.3888 25 6 -3.0497 -12.2058 4.3613 26 1 -4.0826 -12.5502 4.4113 27 9 -2.1125 -13.1646 3.9618 28 6 -1.9643 -7.9027 2.8376 29 6 0.8559 -3.0000 1.3939 30 1 -0.4850 0.8401 -0.0004 31 1 0.4436 -2.5306 -0.7312 32 1 3.1381 -3.5659 0.4211 33 1 2.1855 -4.2539 -0.9623 34 1 -0.2107 -6.1615 4.5768 35 1 1.3202 -6.7535 3.7354 36 1 0.7381 -8.9464 2.1103 37 1 -0.4842 -8.5051 0.8418 38 1 -1.5760 -11.2264 5.7538 39 1 -3.3391 -10.8242 6.1153 40 1 -2.6539 -7.6679 2.0267 41 1 -2.3986 -7.7360 3.8235 42 1 -0.2048 -2.8775 1.6132 43 1 1.4977 -2.6214 2.1893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271104778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:43 Heat of formation + Delta-G solvation = 1.871707 kcal Electronic energy + Delta-G solvation = -26235.004451 eV Core-core repulsion = 22198.823626 eV Total energy + Delta-G solvation = -4036.180824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.55443 -41.95365 -40.93399 -39.77162 -38.51027 -36.71753 -35.64949 -34.62740 -31.11666 -29.60448 -27.43522 -27.19785 -26.68699 -24.67777 -24.57620 -23.33569 -22.01738 -20.83357 -19.78643 -19.37918 -18.74454 -18.64469 -18.08251 -17.28284 -17.04608 -17.03520 -16.61369 -16.35381 -16.12096 -15.69635 -15.57940 -15.24535 -15.03484 -14.64520 -14.47783 -14.14253 -14.10671 -13.79508 -13.56688 -13.24591 -13.19151 -13.14793 -13.01567 -12.74335 -12.58253 -12.17924 -11.94571 -11.68258 -11.47821 -11.39402 -11.33243 -11.12613 -11.04079 -10.83773 -10.66846 -10.49732 -9.86498 -9.53763 -8.15616 -6.25868 1.29097 1.41971 1.46976 1.51451 1.61150 1.64919 1.97572 2.47187 2.58084 2.70528 3.02090 3.10833 3.15400 3.29100 3.45991 3.59435 3.66645 3.84192 4.04341 4.09659 4.20322 4.27745 4.36155 4.41335 4.45780 4.48665 4.56201 4.62066 4.67226 4.71930 4.75048 4.78426 4.84344 4.86054 4.89638 4.94930 5.01908 5.09317 5.14965 5.62000 5.83638 6.25238 6.62321 6.82557 6.93931 6.98790 7.18791 7.44051 8.94463 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.039831 B = 0.002055 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.793788 B =13621.857510 C =13968.885649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.527 4.527 8 H 0.064 0.936 9 C 0.021 3.979 10 C 0.103 3.897 11 N -0.641 5.641 12 C 0.551 3.449 13 O -0.595 6.595 14 C -0.155 4.155 15 H 0.151 0.849 16 C -0.091 4.091 17 C -0.152 4.152 18 C 0.147 3.853 19 N -0.643 5.643 20 C 0.555 3.445 21 O -0.587 6.587 22 C -0.205 4.205 23 H 0.176 0.824 24 C -0.142 4.142 25 C 0.030 3.970 26 H 0.185 0.815 27 F -0.201 7.201 28 C 0.157 3.843 29 C 0.119 3.881 30 H 0.265 0.735 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.167 0.833 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.068 0.932 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 -13.606 14.443 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.565 4.565 8 H 0.082 0.918 9 C 0.002 3.998 10 C -0.020 4.020 11 N -0.373 5.373 12 C 0.342 3.658 13 O -0.478 6.478 14 C -0.177 4.177 15 H 0.169 0.831 16 C -0.128 4.128 17 C -0.153 4.153 18 C 0.025 3.975 19 N -0.377 5.377 20 C 0.347 3.653 21 O -0.467 6.467 22 C -0.226 4.226 23 H 0.194 0.806 24 C -0.180 4.180 25 C -0.005 4.005 26 H 0.201 0.799 27 F -0.182 7.182 28 C 0.036 3.964 29 C -0.003 4.003 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.169 0.831 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.185 0.815 40 H 0.129 0.871 41 H 0.144 0.856 42 H 0.086 0.914 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.496 -14.929 14.104 23.536 hybrid contribution 1.094 0.862 -0.943 1.682 sum -10.402 -14.067 13.161 21.893 Atomic orbital electron populations 1.70045 1.07248 1.27775 1.50343 1.25712 0.95591 1.02360 0.94099 0.85532 0.79164 0.79570 0.77530 1.19087 1.21122 1.20385 1.21222 0.93249 0.90564 1.51513 0.91812 1.20190 0.94537 0.91503 0.93587 1.23230 0.94671 0.92289 0.91790 1.49935 1.42095 1.05254 1.40030 1.19908 0.82595 0.80180 0.83082 1.90638 1.59436 1.41624 1.56075 1.22007 1.00944 0.97280 0.97449 0.83096 1.22940 0.99862 0.97249 0.92777 1.22069 0.99657 0.89920 1.03692 1.22179 0.91786 0.87912 0.95654 1.49618 1.28297 1.06911 1.52908 1.19911 0.86389 0.79471 0.79572 1.90761 1.51629 1.44788 1.59508 1.23005 0.98531 1.01680 0.99403 0.80640 1.23817 1.05134 0.98800 0.90219 1.22759 0.93677 0.81465 1.02649 0.79861 1.92828 1.68548 1.65287 1.91506 1.22701 0.92257 0.75931 1.05502 1.23261 1.00282 0.76496 1.00307 0.92606 0.94270 0.90084 0.92975 0.83058 0.89328 0.93142 0.90277 0.89278 0.81538 0.87059 0.85605 0.91380 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.19 13.26 21.45 0.28 -47.90 16 2 C 0.02 1.14 5.46 84.66 0.46 1.60 16 3 Si 0.96 39.68 29.54 68.60 2.03 41.70 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.53 -25.97 8.83 25.60 0.23 -25.74 16 8 H 0.06 3.08 7.81 -2.91 -0.02 3.05 16 9 C 0.02 0.96 3.77 -11.29 -0.04 0.92 16 10 C 0.10 4.19 8.19 83.18 0.68 4.87 16 11 N -0.64 -24.43 3.69 -858.83 -3.17 -27.60 16 12 C 0.55 19.80 7.86 87.66 0.69 20.49 16 13 O -0.60 -25.38 16.08 -3.04 -0.05 -25.43 16 14 C -0.16 -3.80 6.02 -11.77 -0.07 -3.87 16 15 H 0.15 3.05 8.14 -2.39 -0.02 3.03 16 16 C -0.09 -1.75 10.24 30.38 0.31 -1.44 16 17 C -0.15 -3.23 3.15 -52.94 -0.17 -3.40 16 18 C 0.15 4.19 7.12 83.64 0.60 4.78 16 19 N -0.64 -14.86 3.69 -855.60 -3.16 -18.01 16 20 C 0.56 14.41 7.86 87.66 0.69 15.10 16 21 O -0.59 -21.96 15.92 -3.03 -0.05 -22.00 16 22 C -0.21 -2.81 6.01 -11.54 -0.07 -2.88 16 23 H 0.18 0.95 8.14 -2.38 -0.02 0.93 16 24 C -0.14 -1.37 10.22 30.59 0.31 -1.05 16 25 C 0.03 0.42 7.82 30.60 0.24 0.66 16 26 H 0.18 0.82 8.14 -2.39 -0.02 0.80 16 27 F -0.20 -5.34 15.71 44.97 0.71 -4.63 16 28 C 0.16 2.20 8.44 83.73 0.71 2.91 16 29 C 0.12 4.58 7.98 83.09 0.66 5.24 16 30 H 0.26 13.22 8.31 -92.70 -0.77 12.45 16 31 H 0.04 1.99 8.11 -2.39 -0.02 1.97 16 32 H 0.08 3.16 8.10 -2.39 -0.02 3.14 16 33 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 2.45 8.11 -2.39 -0.02 2.43 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.17 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.08 3.04 8.10 -2.39 -0.02 3.02 16 Total: -1.00 -76.13 374.42 2.84 -73.29 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.02 Total: 12.39 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 5.23 Total: 18.19 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -6.04 Total: -93.52 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -0.10 Total: -47.43 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.71 Total: -4.63 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.70 kcal Total: -76.13 2.84 -73.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271104778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.166 kcal (2) G-P(sol) polarization free energy of solvation -76.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds