Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47492 * 272.94568 * 3 2 1 5 5 H 1.48507 * 109.47180 * 32.94420 * 3 2 1 6 6 H 1.48497 * 109.47318 * 152.94385 * 3 2 1 7 7 C 1.38810 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00002 * 339.34072 * 7 2 1 9 9 N 1.36942 * 119.99934 * 159.34561 * 7 2 1 10 10 C 1.46926 * 120.62987 * 332.62852 * 9 7 2 11 11 C 1.53191 * 108.77465 * 233.58674 * 10 9 7 12 12 C 1.53044 * 109.31263 * 305.36428 * 11 10 9 13 13 N 1.46499 * 109.45786 * 181.38313 * 12 11 10 14 14 C 1.34777 * 119.99525 * 154.97553 * 13 12 11 15 15 O 1.21586 * 120.00325 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99921 * 180.02562 * 14 13 12 17 17 N 1.40101 * 119.99909 * 359.97438 * 16 14 13 18 18 C 1.34766 * 119.99769 * 180.27498 * 17 16 14 19 19 O 1.21606 * 120.00499 * 359.72768 * 18 17 16 20 20 C 1.47439 * 120.00029 * 179.72443 * 18 17 16 21 21 C 1.41292 * 126.41067 * 359.69286 * 20 18 17 22 22 N 1.30446 * 108.01970 * 179.85137 * 21 20 18 23 23 N 1.39931 * 108.89737 * 0.41226 * 22 21 20 24 24 H 0.97007 * 125.75433 * 179.70831 * 23 22 21 25 25 C 1.34254 * 108.49266 * 359.72853 * 23 22 21 26 26 C 1.53042 * 109.52450 * 61.37188 * 12 11 10 27 27 C 1.46926 * 120.63038 * 152.60172 * 9 7 2 28 28 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58797 * 113.80166 * 10 9 7 30 30 H 1.09002 * 109.70621 * 353.44288 * 10 9 7 31 31 H 1.09004 * 109.49853 * 185.41176 * 11 10 9 32 32 H 1.08995 * 109.52270 * 65.33029 * 11 10 9 33 33 H 1.08996 * 109.45753 * 301.36020 * 12 11 10 34 34 H 0.96992 * 120.00232 * 334.97523 * 13 12 11 35 35 H 0.97001 * 119.99840 * 179.97438 * 16 14 13 36 36 H 0.97004 * 119.99576 * 0.02562 * 17 16 14 37 37 H 1.07999 * 125.98796 * 359.97438 * 21 20 18 38 38 H 1.08003 * 126.29094 * 180.02562 * 25 23 22 39 39 H 1.08996 * 109.49751 * 58.58203 * 26 12 11 40 40 H 1.09007 * 109.49788 * 178.67831 * 26 12 11 41 41 H 1.08998 * 109.58904 * 246.20097 * 27 9 7 42 42 H 1.09006 * 109.58654 * 6.48706 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4353 2.0825 -1.3982 5 1 1.4800 2.6339 0.7614 6 1 3.5774 1.4231 0.6368 7 6 2.0102 -1.2021 -0.0005 8 1 1.5224 -2.1075 0.3290 9 7 3.3136 -1.2400 -0.4189 10 6 3.8173 -0.2582 -1.3890 11 6 4.4622 -1.0076 -2.5592 12 6 5.5290 -1.9641 -2.0214 13 7 6.1708 -2.6583 -3.1405 14 6 7.4214 -3.1422 -3.0051 15 8 8.0172 -3.0021 -1.9545 16 7 8.0122 -3.7804 -4.0349 17 7 7.3260 -3.9414 -5.2457 18 6 7.9146 -4.5845 -6.2734 19 8 9.0431 -5.0207 -6.1515 20 6 7.1902 -4.7592 -7.5456 21 6 5.8799 -4.3152 -7.8325 22 7 5.5980 -4.6558 -9.0597 23 7 6.6945 -5.3323 -9.6055 24 1 6.7463 -5.6968 -10.5030 25 6 7.6628 -5.3924 -8.6775 26 6 4.8750 -2.9897 -1.0927 27 6 4.2351 -2.2629 0.0943 28 1 -0.4850 0.8400 -0.0004 29 1 4.5597 0.3805 -0.9106 30 1 2.9923 0.3522 -1.7562 31 1 4.9247 -0.2918 -3.2390 32 1 3.6999 -1.5755 -3.0925 33 1 6.2780 -1.3982 -1.4674 34 1 5.6957 -2.7697 -3.9787 35 1 8.9124 -4.1283 -3.9376 36 1 6.4258 -3.5931 -5.3430 37 1 5.2270 -3.7848 -7.1551 38 1 8.6334 -5.8514 -8.7950 39 1 4.1085 -3.5389 -1.6395 40 1 5.6314 -3.6851 -0.7284 41 1 5.0116 -1.7876 0.6937 42 1 3.6845 -2.9757 0.7083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311895803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = 79.157342 kcal Electronic energy + Delta-G solvation = -26804.683307 eV Core-core repulsion = 22824.066552 eV Total energy + Delta-G solvation = -3980.616755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.94105 -40.59370 -39.27557 -37.77452 -35.88436 -34.63126 -32.74511 -32.13864 -31.50165 -30.48236 -30.31108 -29.67708 -25.07329 -23.93061 -23.00870 -22.61251 -22.25169 -20.99180 -20.82627 -19.92579 -19.31636 -18.85709 -17.42768 -16.77745 -16.04448 -15.98704 -15.79052 -15.36999 -15.19295 -15.16068 -14.71226 -14.52225 -14.21433 -14.16936 -13.81989 -13.46286 -13.19939 -12.96628 -12.43482 -12.03324 -11.83832 -11.78737 -11.61519 -11.05914 -10.85295 -10.67063 -10.59684 -10.47713 -10.35830 -10.31560 -10.10859 -9.80305 -9.50520 -9.49086 -9.04116 -8.65447 -8.49136 -7.01344 -5.96666 -3.32707 0.94098 1.53082 1.57828 2.18844 2.82992 2.91691 3.11753 3.29557 3.48391 3.51408 3.89612 4.20314 4.39201 4.51140 4.65396 4.74491 4.93259 5.03837 5.09020 5.30111 5.36342 5.61779 5.68818 5.78868 5.99510 6.00839 6.07796 6.18061 6.22692 6.34496 6.45911 6.47058 6.55964 6.62023 6.64359 6.69485 6.85997 6.91650 7.06055 7.46519 7.94174 8.01874 8.31319 8.39231 8.92047 9.70028 10.07305 11.19282 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.002739 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.382521 B =10221.435396 C =11253.622228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.141 4.141 12 C 0.166 3.834 13 N -0.736 5.736 14 C 0.712 3.288 15 O -0.568 6.568 16 N -0.534 5.534 17 N -0.524 5.524 18 C 0.601 3.399 19 O -0.544 6.544 20 C -0.291 4.291 21 C 0.085 3.915 22 N -0.287 5.287 23 N -0.461 5.461 24 H 0.448 0.552 25 C 0.144 3.856 26 C -0.143 4.143 27 C 0.150 3.850 28 H 0.263 0.737 29 H 0.028 0.972 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.387 0.613 35 H 0.441 0.559 36 H 0.419 0.581 37 H 0.193 0.807 38 H 0.195 0.805 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.721 -10.023 -20.019 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.181 4.181 12 C 0.063 3.937 13 N -0.391 5.391 14 C 0.411 3.589 15 O -0.442 6.442 16 N -0.292 5.292 17 N -0.275 5.275 18 C 0.388 3.612 19 O -0.421 6.421 20 C -0.307 4.307 21 C -0.104 4.104 22 N -0.108 5.108 23 N -0.166 5.166 24 H 0.293 0.707 25 C -0.010 4.010 26 C -0.183 4.183 27 C 0.024 3.976 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.220 0.780 35 H 0.287 0.713 36 H 0.261 0.739 37 H 0.210 0.790 38 H 0.212 0.788 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.740 -10.005 -19.959 26.753 hybrid contribution 0.678 0.727 -0.359 1.057 sum 15.418 -9.278 -20.318 27.141 Atomic orbital electron populations 1.69834 1.05743 1.26570 1.52985 1.25289 0.95233 0.97573 0.99519 0.86979 0.80164 0.84680 0.77011 1.21627 1.23143 1.19433 1.18930 0.84905 0.94795 1.40132 0.89612 1.44412 1.08714 1.33321 1.46527 1.21306 0.97332 0.92044 0.89025 1.22374 0.97390 0.98398 0.99939 1.20969 0.94169 0.92760 0.85846 1.45525 1.14349 1.61568 1.17687 1.15782 0.82079 0.78542 0.82448 1.91040 1.64608 1.63461 1.25057 1.44637 1.18257 1.63616 1.02660 1.44557 1.17304 1.60304 1.05307 1.17163 0.85449 0.77152 0.81400 1.90822 1.18400 1.50309 1.82550 1.19903 0.97538 1.17112 0.96194 1.24181 0.94604 0.97741 0.93827 1.77258 1.07872 1.14763 1.10881 1.46298 1.11068 1.44450 1.14741 0.70717 1.23049 0.94834 0.95144 0.87930 1.22416 0.99462 0.98049 0.98372 1.20905 0.92350 0.91356 0.93003 0.92754 0.95383 0.90435 0.92125 0.91066 0.89537 0.77951 0.71343 0.73921 0.78991 0.78796 0.91799 0.92059 0.95590 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.34 13.97 55.49 0.78 -26.56 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 21.87 24.34 -169.99 -4.14 17.73 16 4 H -0.29 -6.81 6.62 56.52 0.37 -6.44 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.61 6.63 56.52 0.37 -6.23 16 7 C -0.26 -7.05 10.04 -15.06 -0.15 -7.21 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 9 N -0.61 -13.87 2.77 -172.32 -0.48 -14.35 16 10 C 0.13 2.66 4.20 -3.71 -0.02 2.64 16 11 C -0.14 -2.20 5.55 -26.61 -0.15 -2.35 16 12 C 0.17 2.51 2.42 -67.89 -0.16 2.34 16 13 N -0.74 -8.74 5.04 -58.63 -0.30 -9.03 16 14 C 0.71 9.59 8.64 -86.91 -0.75 8.84 16 15 O -0.57 -9.98 16.84 5.29 0.09 -9.89 16 16 N -0.53 -5.81 6.26 27.64 0.17 -5.64 16 17 N -0.52 -4.28 6.25 30.43 0.19 -4.09 16 18 C 0.60 5.45 7.93 -12.52 -0.10 5.35 16 19 O -0.54 -6.65 16.74 5.27 0.09 -6.56 16 20 C -0.29 -1.99 6.13 -105.06 -0.64 -2.63 16 21 C 0.09 0.52 11.50 -16.98 -0.20 0.33 16 22 N -0.29 -2.07 12.63 30.86 0.39 -1.68 16 23 N -0.46 -2.01 7.29 30.85 0.22 -1.79 16 24 H 0.45 0.45 8.96 -182.72 -1.64 -1.19 16 25 C 0.14 0.70 11.82 -16.57 -0.20 0.51 16 26 C -0.14 -2.33 5.65 -26.61 -0.15 -2.48 16 27 C 0.15 2.93 6.52 -3.71 -0.02 2.90 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 30 H 0.08 1.74 4.50 -51.93 -0.23 1.51 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 34 H 0.39 3.33 6.52 -40.82 -0.27 3.06 16 35 H 0.44 4.97 8.10 -182.60 -1.48 3.49 16 36 H 0.42 2.32 5.66 -182.59 -1.03 1.29 16 37 H 0.19 0.59 7.50 -52.49 -0.39 0.19 16 38 H 0.20 0.46 8.06 -52.48 -0.42 0.04 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -36.97 347.07 -8.74 -45.72 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.36 Total: 2.13 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -2.63 Total: 8.79 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: 0.98 Total: -63.15 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.18 Total: -16.45 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.97 -8.74 -45.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311895803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.873 kcal (2) G-P(sol) polarization free energy of solvation -36.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds