Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47492 * 272.94568 * 3 2 1 5 5 H 1.48507 * 109.47180 * 32.94420 * 3 2 1 6 6 H 1.48497 * 109.47318 * 152.94385 * 3 2 1 7 7 C 1.38810 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00002 * 339.34072 * 7 2 1 9 9 N 1.36942 * 119.99934 * 159.34561 * 7 2 1 10 10 C 1.46926 * 120.62987 * 332.62852 * 9 7 2 11 11 C 1.53191 * 108.77465 * 233.58674 * 10 9 7 12 12 C 1.53044 * 109.31263 * 305.36428 * 11 10 9 13 13 N 1.46499 * 109.45786 * 181.38313 * 12 11 10 14 14 C 1.34777 * 119.99525 * 154.97553 * 13 12 11 15 15 O 1.21586 * 120.00325 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99921 * 180.02562 * 14 13 12 17 17 N 1.40101 * 119.99909 * 359.97438 * 16 14 13 18 18 C 1.34766 * 119.99769 * 180.27498 * 17 16 14 19 19 O 1.21606 * 120.00499 * 359.72768 * 18 17 16 20 20 C 1.47439 * 120.00029 * 179.72443 * 18 17 16 21 21 C 1.41292 * 126.41067 * 359.69286 * 20 18 17 22 22 N 1.30446 * 108.01970 * 179.85137 * 21 20 18 23 23 N 1.39931 * 108.89737 * 0.41226 * 22 21 20 24 24 H 0.97007 * 125.75433 * 179.70831 * 23 22 21 25 25 C 1.34254 * 108.49266 * 359.72853 * 23 22 21 26 26 C 1.53042 * 109.52450 * 61.37188 * 12 11 10 27 27 C 1.46926 * 120.63038 * 152.60172 * 9 7 2 28 28 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58797 * 113.80166 * 10 9 7 30 30 H 1.09002 * 109.70621 * 353.44288 * 10 9 7 31 31 H 1.09004 * 109.49853 * 185.41176 * 11 10 9 32 32 H 1.08995 * 109.52270 * 65.33029 * 11 10 9 33 33 H 1.08996 * 109.45753 * 301.36020 * 12 11 10 34 34 H 0.96992 * 120.00232 * 334.97523 * 13 12 11 35 35 H 0.97001 * 119.99840 * 179.97438 * 16 14 13 36 36 H 0.97004 * 119.99576 * 0.02562 * 17 16 14 37 37 H 1.07999 * 125.98796 * 359.97438 * 21 20 18 38 38 H 1.08003 * 126.29094 * 180.02562 * 25 23 22 39 39 H 1.08996 * 109.49751 * 58.58203 * 26 12 11 40 40 H 1.09007 * 109.49788 * 178.67831 * 26 12 11 41 41 H 1.08998 * 109.58904 * 246.20097 * 27 9 7 42 42 H 1.09006 * 109.58654 * 6.48706 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4353 2.0825 -1.3982 5 1 1.4800 2.6339 0.7614 6 1 3.5774 1.4231 0.6368 7 6 2.0102 -1.2021 -0.0005 8 1 1.5224 -2.1075 0.3290 9 7 3.3136 -1.2400 -0.4189 10 6 3.8173 -0.2582 -1.3890 11 6 4.4622 -1.0076 -2.5592 12 6 5.5290 -1.9641 -2.0214 13 7 6.1708 -2.6583 -3.1405 14 6 7.4214 -3.1422 -3.0051 15 8 8.0172 -3.0021 -1.9545 16 7 8.0122 -3.7804 -4.0349 17 7 7.3260 -3.9414 -5.2457 18 6 7.9146 -4.5845 -6.2734 19 8 9.0431 -5.0207 -6.1515 20 6 7.1902 -4.7592 -7.5456 21 6 5.8799 -4.3152 -7.8325 22 7 5.5980 -4.6558 -9.0597 23 7 6.6945 -5.3323 -9.6055 24 1 6.7463 -5.6968 -10.5030 25 6 7.6628 -5.3924 -8.6775 26 6 4.8750 -2.9897 -1.0927 27 6 4.2351 -2.2629 0.0943 28 1 -0.4850 0.8400 -0.0004 29 1 4.5597 0.3805 -0.9106 30 1 2.9923 0.3522 -1.7562 31 1 4.9247 -0.2918 -3.2390 32 1 3.6999 -1.5755 -3.0925 33 1 6.2780 -1.3982 -1.4674 34 1 5.6957 -2.7697 -3.9787 35 1 8.9124 -4.1283 -3.9376 36 1 6.4258 -3.5931 -5.3430 37 1 5.2270 -3.7848 -7.1551 38 1 8.6334 -5.8514 -8.7950 39 1 4.1085 -3.5389 -1.6395 40 1 5.6314 -3.6851 -0.7284 41 1 5.0116 -1.7876 0.6937 42 1 3.6845 -2.9757 0.7083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001311895803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = 48.193052 kcal Electronic energy + Delta-G solvation = -26806.026019 eV Core-core repulsion = 22824.066552 eV Total energy + Delta-G solvation = -3981.959467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.39961 -41.56317 -40.16118 -39.19513 -36.80143 -36.08236 -33.99874 -33.26327 -32.18964 -31.93462 -31.55043 -30.57445 -26.81411 -24.64390 -24.44279 -23.75734 -22.99484 -22.13202 -21.60220 -21.09733 -20.18023 -19.64372 -18.79270 -18.08054 -17.33445 -16.85398 -16.70648 -16.53314 -16.10674 -15.90351 -15.79381 -15.55194 -15.31513 -15.21180 -15.20921 -14.73354 -14.47761 -14.22180 -13.83786 -13.79178 -13.44686 -12.59216 -12.54733 -12.49867 -12.31022 -12.24306 -11.99038 -11.80677 -11.66942 -11.53048 -11.29351 -11.16038 -10.88057 -10.68519 -10.22647 -9.98606 -9.32032 -8.93028 -8.12879 -5.44981 0.48879 0.75662 1.10794 1.32463 1.46780 1.54954 1.81224 1.92698 1.98832 2.37174 2.44697 3.09948 3.33848 3.38446 3.79421 3.84472 3.87778 4.01594 4.05308 4.26682 4.36831 4.38940 4.53222 4.64405 4.66995 4.71152 4.89254 4.96095 5.06659 5.11910 5.21881 5.25173 5.36596 5.42182 5.45522 5.64445 5.90590 6.16461 6.21147 6.27430 6.49992 6.64515 6.94635 7.21200 7.40632 7.65203 8.05271 9.06984 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.002739 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.382521 B =10221.435396 C =11253.622228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.315 1.315 6 H -0.265 1.265 7 C -0.247 4.247 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.120 3.880 11 C -0.128 4.128 12 C 0.177 3.823 13 N -0.720 5.720 14 C 0.715 3.285 15 O -0.611 6.611 16 N -0.528 5.528 17 N -0.513 5.513 18 C 0.604 3.396 19 O -0.579 6.579 20 C -0.313 4.313 21 C 0.089 3.911 22 N -0.321 5.321 23 N -0.449 5.449 24 H 0.461 0.539 25 C 0.158 3.842 26 C -0.130 4.130 27 C 0.146 3.854 28 H 0.261 0.739 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.406 0.594 35 H 0.440 0.560 36 H 0.433 0.567 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.029 0.971 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.318 -10.000 -22.426 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.228 4.228 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.244 1.244 6 H -0.190 1.190 7 C -0.376 4.376 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.006 4.006 11 C -0.167 4.167 12 C 0.072 3.928 13 N -0.376 5.376 14 C 0.414 3.586 15 O -0.488 6.488 16 N -0.284 5.284 17 N -0.266 5.266 18 C 0.394 3.606 19 O -0.458 6.458 20 C -0.330 4.330 21 C -0.100 4.100 22 N -0.142 5.142 23 N -0.155 5.155 24 H 0.309 0.691 25 C 0.002 3.998 26 C -0.170 4.170 27 C 0.021 3.979 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.243 0.757 35 H 0.286 0.714 36 H 0.277 0.723 37 H 0.234 0.766 38 H 0.235 0.765 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.346 -10.003 -22.463 29.526 hybrid contribution 0.223 0.575 0.339 0.703 sum 16.568 -9.428 -22.123 29.204 Atomic orbital electron populations 1.69959 1.07410 1.27193 1.55760 1.25880 0.95788 1.00815 1.00363 0.85965 0.78543 0.80295 0.77931 1.19242 1.24417 1.18969 1.18859 0.86602 0.93557 1.38599 0.92949 1.44518 1.07698 1.34488 1.47628 1.21388 0.96952 0.92056 0.90167 1.22182 0.97496 0.98771 0.98259 1.20635 0.93630 0.92250 0.86325 1.45084 1.13892 1.60930 1.17733 1.15748 0.82104 0.78495 0.82258 1.91017 1.65678 1.65046 1.27017 1.44406 1.18198 1.62518 1.03230 1.44556 1.17670 1.60309 1.04039 1.17472 0.85025 0.76264 0.81836 1.90808 1.19995 1.51863 1.83173 1.19832 0.98164 1.19184 0.95790 1.24597 0.94497 0.97088 0.93784 1.77222 1.09296 1.16066 1.11594 1.46327 1.10288 1.43595 1.15315 0.69072 1.23455 0.95408 0.93632 0.87258 1.22237 0.99368 0.98033 0.97380 1.21013 0.91786 0.90701 0.94427 0.92967 0.95049 0.92245 0.88826 0.90268 0.90898 0.75675 0.71421 0.72314 0.76608 0.76503 0.91514 0.91677 0.95311 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.00 13.97 21.65 0.30 -58.70 16 2 C -0.03 -1.93 5.23 84.86 0.44 -1.48 16 3 Si 0.94 45.27 24.34 68.60 1.67 46.94 16 4 H -0.27 -11.69 6.62 99.48 0.66 -11.03 16 5 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 6 H -0.27 -12.36 6.63 99.48 0.66 -11.70 16 7 C -0.25 -13.61 10.04 84.03 0.84 -12.76 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 9 N -0.62 -27.89 2.77 -699.08 -1.94 -29.82 16 10 C 0.12 4.66 4.20 86.36 0.36 5.02 16 11 C -0.13 -3.54 5.55 30.67 0.17 -3.37 16 12 C 0.18 4.84 2.42 45.02 0.11 4.95 16 13 N -0.72 -14.84 5.04 -457.68 -2.31 -17.14 16 14 C 0.71 17.69 8.64 179.05 1.55 19.24 16 15 O -0.61 -20.66 16.84 -3.99 -0.07 -20.73 16 16 N -0.53 -10.45 6.26 -184.74 -1.16 -11.61 16 17 N -0.51 -7.09 6.25 -175.89 -1.10 -8.19 16 18 C 0.60 9.73 7.93 86.67 0.69 10.42 16 19 O -0.58 -13.34 16.74 -4.05 -0.07 -13.40 16 20 C -0.31 -3.54 6.13 -20.15 -0.12 -3.67 16 21 C 0.09 0.85 11.50 85.65 0.99 1.84 16 22 N -0.32 -3.91 12.63 -56.27 -0.71 -4.62 16 23 N -0.45 -2.86 7.29 -56.32 -0.41 -3.27 16 24 H 0.46 -0.13 8.96 -213.42 -1.91 -2.04 16 25 C 0.16 1.14 11.82 84.28 1.00 2.14 16 26 C -0.13 -4.01 5.65 30.67 0.17 -3.84 16 27 C 0.15 5.60 6.52 86.36 0.56 6.16 16 28 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.03 1.21 7.07 -2.38 -0.02 1.20 16 30 H 0.06 2.54 4.50 -2.39 -0.01 2.53 16 31 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.28 7.58 -2.39 -0.02 2.27 16 34 H 0.41 5.35 6.52 -92.71 -0.60 4.74 16 35 H 0.44 9.36 8.10 -213.32 -1.73 7.63 16 36 H 0.43 3.33 5.66 -213.31 -1.21 2.13 16 37 H 0.22 0.61 7.50 -2.91 -0.02 0.59 16 38 H 0.22 0.43 8.06 -2.91 -0.02 0.40 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 2.27 7.93 -2.38 -0.02 2.25 16 Total: -1.00 -81.50 347.07 -3.45 -84.95 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.43 Total: 10.94 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 6.76 Total: 24.65 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -7.32 Total: -133.35 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.13 Total: -34.13 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Total: -81.50 -3.45 -84.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311895803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.142 kcal (2) G-P(sol) polarization free energy of solvation -81.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds