Wall clock time and date at job start Fri Apr 10 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48499 * 109.46889 * 269.99679 * 3 2 1 5 5 H 1.48500 * 109.47149 * 29.99784 * 3 2 1 6 6 H 1.48503 * 109.47060 * 149.99996 * 3 2 1 7 7 C 1.38953 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99551 * 0.02562 * 7 2 1 9 9 N 1.37090 * 120.00103 * 180.02562 * 7 2 1 10 10 C 1.34784 * 119.99884 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99990 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00078 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47316 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00059 * 179.97438 * 13 12 10 15 15 O 1.21585 * 119.99998 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99865 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00064 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47313 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47365 * 179.97438 * 18 17 16 20 20 N 1.46498 * 109.47425 * 179.97438 * 19 18 17 21 21 C 1.38405 * 120.00241 * 180.02562 * 20 19 18 22 22 N 1.32494 * 119.21430 * 359.45979 * 21 20 19 23 23 C 1.32277 * 120.73841 * 179.72095 * 22 21 20 24 24 C 1.38608 * 119.19678 * 0.53884 * 23 22 21 25 25 C 1.38606 * 118.55898 * 359.73449 * 24 23 22 26 26 N 1.32279 * 119.19607 * 359.97438 * 25 24 23 27 27 H 0.97005 * 119.99746 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00294 * 0.02562 * 9 7 2 29 29 H 1.09008 * 109.47156 * 59.99717 * 12 10 9 30 30 H 1.08997 * 109.47416 * 300.00086 * 12 10 9 31 31 H 0.96995 * 119.99916 * 0.02562 * 13 12 10 32 32 H 0.96998 * 119.99560 * 0.02562 * 16 14 13 33 33 H 1.08998 * 109.47084 * 59.99574 * 17 16 14 34 34 H 1.09006 * 109.46926 * 300.00281 * 17 16 14 35 35 H 1.09007 * 109.47198 * 60.00066 * 18 17 16 36 36 H 1.08993 * 109.47153 * 300.00087 * 18 17 16 37 37 H 1.09007 * 109.46593 * 60.00082 * 19 18 17 38 38 H 1.09001 * 109.47217 * 300.00064 * 19 18 17 39 39 H 0.97005 * 119.99891 * 359.72855 * 20 19 18 40 40 H 1.08000 * 120.40224 * 180.29765 * 23 22 21 41 41 H 1.07992 * 120.71909 * 179.75623 * 24 23 22 42 42 H 1.07994 * 120.40358 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5606 -2.3707 0.0022 13 7 6.0489 -3.7519 0.0026 14 6 7.3740 -3.9982 0.0031 15 8 8.1641 -3.0741 0.0037 16 7 7.8232 -5.2689 0.0029 17 6 9.2635 -5.5367 0.0041 18 6 9.5013 -7.0480 0.0042 19 6 11.0056 -7.3277 0.0048 20 7 11.2333 -8.7748 0.0056 21 6 12.5249 -9.2722 0.0067 22 7 13.5439 -8.4255 -0.0039 23 6 14.7906 -8.8677 0.0024 24 6 15.0232 -10.2341 0.0088 25 6 13.9343 -11.0917 0.0141 26 7 12.7129 -10.5837 0.0134 27 1 -0.4850 0.8401 -0.0004 28 1 3.8648 -0.3634 0.0014 29 1 5.9233 -1.8572 0.8928 30 1 5.9247 -1.8565 -0.8872 31 1 5.4186 -4.4891 0.0018 32 1 7.1928 -6.0061 0.0021 33 1 9.7139 -5.0982 0.8946 34 1 9.7154 -5.0974 -0.8854 35 1 9.0509 -7.4868 -0.8861 36 1 9.0496 -7.4868 0.8938 37 1 11.4564 -6.8888 0.8950 38 1 11.4570 -6.8890 -0.8851 39 1 10.4788 -9.3845 0.0097 40 1 15.6171 -8.1726 -0.0015 41 1 16.0310 -10.6221 0.0101 42 1 14.0812 -12.1616 0.0196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312660346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:52 Heat of formation + Delta-G solvation = -6.315734 kcal Electronic energy + Delta-G solvation = -24652.674091 eV Core-core repulsion = 20668.350945 eV Total energy + Delta-G solvation = -3984.323146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26164 -39.95813 -38.44313 -37.29326 -35.24880 -34.46661 -34.02347 -33.73472 -32.39657 -31.79610 -30.25067 -27.85294 -25.78991 -24.87413 -24.14649 -23.12521 -22.09860 -20.75509 -19.65454 -18.88430 -18.58161 -17.94515 -17.82939 -16.41506 -16.37858 -16.10899 -15.64711 -15.61114 -15.19587 -15.10444 -14.89780 -14.78578 -14.21187 -14.14746 -13.95446 -13.79583 -13.24901 -13.14925 -12.51278 -12.35956 -12.16800 -12.15332 -12.03261 -11.63288 -11.37118 -11.23438 -11.22531 -10.77464 -10.64229 -10.15898 -10.06207 -9.70070 -9.51596 -9.26618 -8.77269 -8.71034 -8.53318 -8.30698 -6.41124 -3.93720 0.76853 0.79752 2.34488 2.78205 2.99820 3.04582 3.12748 3.30667 3.52458 3.57375 3.78398 4.03432 4.21283 4.22621 4.35047 4.52429 4.54560 4.61034 4.68586 4.82577 4.84427 5.12711 5.14049 5.23096 5.36585 5.40718 5.63080 5.69035 5.71494 5.80198 5.85359 5.85630 6.34968 6.41016 6.62257 6.65952 6.98349 7.02220 7.44694 7.92020 7.99875 8.14082 8.44064 8.70205 8.81410 9.29606 9.63285 10.71029 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.052008 B = 0.001446 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.246212 B =19356.359263 C =19863.546126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.121 0.879 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.580 6.580 12 C 0.126 3.874 13 N -0.725 5.725 14 C 0.706 3.294 15 O -0.597 6.597 16 N -0.750 5.750 17 C 0.146 3.854 18 C -0.146 4.146 19 C 0.141 3.859 20 N -0.698 5.698 21 C 0.563 3.437 22 N -0.568 5.568 23 C 0.193 3.807 24 C -0.296 4.296 25 C 0.192 3.808 26 N -0.574 5.574 27 H 0.276 0.724 28 H 0.375 0.625 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.408 0.592 32 H 0.398 0.602 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.414 0.586 40 H 0.167 0.833 41 H 0.143 0.857 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.758 -18.102 0.016 33.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.003 4.003 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.476 6.476 16 N -0.406 5.406 17 C 0.021 3.979 18 C -0.184 4.184 19 C 0.017 3.983 20 N -0.334 5.334 21 C 0.206 3.794 22 N -0.291 5.291 23 C 0.025 3.975 24 C -0.322 4.322 25 C 0.024 3.976 26 N -0.296 5.296 27 H 0.086 0.914 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.231 0.769 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.252 0.748 40 H 0.184 0.816 41 H 0.161 0.839 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 27.841 -17.203 0.007 32.728 hybrid contribution 0.558 0.087 0.021 0.565 sum 28.399 -17.117 0.029 33.159 Atomic orbital electron populations 1.69618 1.05728 1.27814 1.48181 1.25060 0.95520 0.98160 0.97100 0.86673 0.79932 0.83752 0.79152 1.19385 1.19987 1.19190 1.19441 0.78978 0.96799 1.48706 0.86098 1.42112 1.07682 1.06146 1.65438 1.19661 0.88104 0.84865 0.84948 1.90533 1.69270 1.30929 1.55693 1.20804 0.93317 0.82877 1.03261 1.44749 1.05204 1.09342 1.78951 1.15815 0.82574 0.83139 0.77969 1.90910 1.55185 1.43153 1.58385 1.44980 1.07803 1.06417 1.81417 1.20933 0.80455 0.93613 1.02926 1.21993 0.95907 0.96686 1.03858 1.21165 0.94935 0.79093 1.03145 1.44110 1.02621 1.07630 1.79088 1.19337 0.86989 0.84997 0.88051 1.67964 0.99740 1.39317 1.22044 1.22971 0.93109 0.94157 0.87279 1.22546 1.01679 0.95807 1.12198 1.22924 0.86475 1.00658 0.87506 1.67906 1.26421 1.12974 1.22318 0.91387 0.79212 0.89869 0.89858 0.75460 0.76856 0.91229 0.91216 0.90315 0.90318 0.90966 0.90905 0.74828 0.81605 0.83893 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.91 13.96 55.50 0.77 -24.13 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 18.96 27.74 -169.99 -4.71 14.24 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 7 C -0.31 -8.54 10.16 -14.94 -0.15 -8.69 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.58 -13.35 5.09 -10.96 -0.06 -13.40 16 10 C 0.44 9.58 7.85 -10.99 -0.09 9.49 16 11 O -0.58 -14.51 15.24 5.55 0.08 -14.43 16 12 C 0.13 2.19 6.15 -5.20 -0.03 2.15 16 13 N -0.72 -11.44 5.53 -66.42 -0.37 -11.81 16 14 C 0.71 10.72 8.57 -86.91 -0.74 9.97 16 15 O -0.60 -11.09 16.34 5.29 0.09 -11.01 16 16 N -0.75 -7.95 5.56 -65.23 -0.36 -8.32 16 17 C 0.15 1.27 5.67 -4.05 -0.02 1.24 16 18 C -0.15 -0.82 5.44 -26.73 -0.15 -0.97 16 19 C 0.14 0.94 5.65 -4.04 -0.02 0.91 16 20 N -0.70 -5.22 5.70 -62.31 -0.36 -5.57 16 21 C 0.56 5.30 8.43 -322.81 -2.72 2.58 16 22 N -0.57 -5.21 9.59 -13.93 -0.13 -5.35 16 23 C 0.19 1.24 11.30 -17.22 -0.19 1.04 16 24 C -0.30 -1.52 10.16 -39.31 -0.40 -1.92 16 25 C 0.19 1.20 11.30 -17.22 -0.19 1.01 16 26 N -0.57 -5.19 10.46 -13.93 -0.15 -5.33 16 27 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 29 H 0.08 1.37 8.14 -51.92 -0.42 0.94 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.41 6.24 7.45 -40.82 -0.30 5.94 16 32 H 0.40 3.25 8.49 -40.82 -0.35 2.91 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.41 2.55 8.59 -40.82 -0.35 2.20 16 40 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.17 0.50 8.06 -52.49 -0.42 0.07 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -36.06 367.42 -9.91 -45.97 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -5.44 Total: 15.63 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: -4.81 Total: 17.96 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -0.65 Total: -73.91 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.17 Total: -25.43 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.06 -9.91 -45.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312660346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.654 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds