Wall clock time and date at job start Fri Apr 10 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99954 * 2 1 4 4 C 1.53002 * 109.47408 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47112 * 184.99811 * 4 3 2 6 6 N 1.46506 * 109.46726 * 64.99619 * 4 3 2 7 7 C 1.34780 * 119.99358 * 155.00077 * 6 4 3 8 8 O 1.21363 * 120.00041 * 0.02562 * 7 6 4 9 9 C 1.49308 * 119.99685 * 179.97438 * 7 6 4 10 10 O 1.21403 * 119.99901 * 0.02562 * 9 7 6 11 11 N 1.34772 * 119.99928 * 180.02562 * 9 7 6 12 12 C 1.40296 * 120.00075 * 180.02562 * 11 9 7 13 13 C 1.40721 * 126.09785 * 359.95410 * 12 11 9 14 14 N 1.30877 * 108.37690 * 179.79304 * 13 12 11 15 15 N 1.40061 * 108.43327 * 0.38408 * 14 13 12 16 16 C 1.37293 * 126.05371 * 179.87288 * 15 14 13 17 17 H 1.07999 * 120.00325 * 173.76022 * 16 15 14 18 18 C 1.39009 * 120.00141 * 354.03938 * 16 15 14 19 19 N 1.31274 * 120.00094 * 5.58291 * 18 16 15 20 20 Si 1.86802 * 120.00082 * 185.57849 * 18 16 15 21 21 H 1.48497 * 109.47065 * 94.97773 * 20 18 16 22 22 H 1.48495 * 109.47224 * 214.98268 * 20 18 16 23 23 H 1.48506 * 109.47153 * 334.98084 * 20 18 16 24 24 C 1.35787 * 126.10252 * 180.02562 * 12 11 9 25 25 C 1.52995 * 109.46834 * 304.99903 * 4 3 2 26 26 C 1.53000 * 117.49876 * 248.74429 * 25 4 3 27 27 C 1.53006 * 117.49829 * 180.08282 * 25 4 3 28 28 H 1.09001 * 109.47195 * 299.99969 * 1 2 3 29 29 H 1.08996 * 109.47265 * 60.00031 * 1 2 3 30 30 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47542 * 59.99829 * 3 2 1 32 32 H 1.09004 * 109.46851 * 300.00108 * 3 2 1 33 33 H 0.96997 * 119.99924 * 335.00314 * 6 4 3 34 34 H 0.96997 * 120.00476 * 0.02562 * 11 9 7 35 35 H 1.07997 * 125.81513 * 0.02562 * 13 12 11 36 36 H 0.96998 * 120.00239 * 179.97438 * 19 18 16 37 37 H 1.07995 * 126.25065 * 359.97438 * 24 12 11 38 38 H 1.09005 * 115.55295 * 34.41856 * 25 4 3 39 39 H 1.09001 * 117.49851 * 359.97438 * 26 25 4 40 40 H 1.09002 * 117.49992 * 145.02430 * 26 25 4 41 41 H 1.08999 * 117.49942 * 214.97883 * 27 25 4 42 42 H 1.09004 * 117.49775 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9783 2.1766 0.0902 6 7 3.9766 0.5640 -1.2509 7 6 5.2208 0.7941 -1.7151 8 8 5.9758 1.5150 -1.0962 9 6 5.6707 0.1610 -2.9903 10 8 4.9156 -0.5606 -3.6092 11 7 6.9150 0.3906 -3.4543 12 6 7.3376 -0.2038 -4.6528 13 6 6.5732 -1.0576 -5.4694 14 7 7.3025 -1.4062 -6.4987 15 7 8.5589 -0.7993 -6.3772 16 6 9.6047 -0.9230 -7.2581 17 1 10.4981 -0.3316 -7.1222 18 6 9.5113 -1.8052 -8.3283 19 7 8.3850 -2.4382 -8.5608 20 14 10.9885 -2.0899 -9.4357 21 1 11.7320 -3.2883 -8.9708 22 1 10.5273 -2.3038 -10.8309 23 1 11.8806 -0.9037 -9.3856 24 6 8.5576 -0.0590 -5.2311 25 6 3.9780 0.3200 1.1826 26 6 4.7337 1.0108 2.3195 27 6 5.4787 0.0799 1.3595 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.3732 -0.0125 -1.7454 34 1 7.5185 0.9668 -2.9597 35 1 5.5564 -1.3690 -5.2810 36 1 8.3198 -3.0535 -9.3078 37 1 9.3773 0.5339 -4.8529 38 1 3.3034 -0.4940 1.4483 39 1 4.9159 2.0813 2.2252 40 1 4.5565 0.6511 3.3331 41 1 5.7913 -0.8918 1.7419 42 1 6.1506 0.5377 0.6335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319396449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:57 Heat of formation + Delta-G solvation = 2.550226 kcal Electronic energy + Delta-G solvation = -26632.884009 eV Core-core repulsion = 22616.652569 eV Total energy + Delta-G solvation = -4016.231440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67086 -39.70242 -38.68220 -37.81957 -36.89491 -34.79553 -33.96042 -33.13440 -30.34374 -30.16186 -28.03996 -26.72785 -25.43134 -24.27415 -23.32429 -22.37350 -21.09836 -20.50878 -20.30279 -19.45333 -18.14712 -17.47265 -16.99587 -16.64648 -16.11218 -15.81660 -15.57567 -15.44780 -15.27739 -15.03568 -14.41644 -14.23686 -13.95408 -13.56136 -13.36967 -12.98162 -12.91956 -12.81086 -12.13664 -12.07688 -11.74536 -11.64561 -11.56829 -11.48054 -11.30691 -11.15811 -10.83816 -10.54326 -10.44354 -10.27356 -10.26266 -10.04350 -9.23040 -9.19421 -9.07506 -8.86046 -8.11594 -6.76585 -6.60111 -4.26982 1.66283 2.56415 2.93831 3.04350 3.09540 3.30361 3.39624 3.68575 3.72970 3.81334 4.07536 4.30277 4.38590 4.59662 4.62374 4.89874 4.90982 4.93336 4.97953 5.01115 5.05612 5.09522 5.18186 5.25899 5.37078 5.51533 5.56330 5.88622 6.05207 6.16452 6.21267 6.32786 6.37922 6.74278 6.77924 6.90378 6.94301 7.17322 7.28193 7.78647 7.88607 8.12547 8.19840 8.50644 8.70906 9.32539 9.60987 10.35981 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.002399 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.282098 B =11670.802373 C =12406.694852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.056 3.944 4 C 0.179 3.821 5 H 0.104 0.896 6 N -0.692 5.692 7 C 0.518 3.482 8 O -0.529 6.529 9 C 0.483 3.517 10 O -0.521 6.521 11 N -0.584 5.584 12 C -0.069 4.069 13 C -0.027 4.027 14 N -0.261 5.261 15 N -0.139 5.139 16 C -0.322 4.322 17 H 0.118 0.882 18 C 0.047 3.953 19 N -0.767 5.767 20 Si 0.936 3.064 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.077 4.077 25 C -0.167 4.167 26 C -0.173 4.173 27 C -0.182 4.182 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.418 0.582 34 H 0.409 0.591 35 H 0.178 0.822 36 H 0.276 0.724 37 H 0.149 0.851 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.615 7.169 17.318 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.022 4.022 4 C 0.074 3.926 5 H 0.121 0.879 6 N -0.345 5.345 7 C 0.300 3.700 8 O -0.406 6.406 9 C 0.264 3.736 10 O -0.398 6.398 11 N -0.227 5.227 12 C -0.174 4.174 13 C -0.202 4.202 14 N -0.092 5.092 15 N 0.094 4.906 16 C -0.455 4.455 17 H 0.136 0.864 18 C -0.171 4.171 19 N -0.394 5.394 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.228 4.228 25 C -0.187 4.187 26 C -0.210 4.210 27 C -0.219 4.219 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.255 0.745 34 H 0.244 0.756 35 H 0.194 0.806 36 H 0.086 0.914 37 H 0.166 0.834 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.585 6.168 16.055 20.195 hybrid contribution 0.401 0.600 0.441 0.846 sum -10.184 6.768 16.496 20.534 Atomic orbital electron populations 1.22763 0.80693 1.03046 1.00008 1.87912 1.19912 1.27132 1.95403 1.22795 0.92253 0.85651 1.01457 1.20695 0.92055 0.97146 0.82678 0.87857 1.45725 1.14520 1.50144 1.24137 1.20282 0.82488 0.81256 0.85960 1.90656 1.53470 1.37478 1.59014 1.19646 0.83305 0.84328 0.86299 1.90662 1.53494 1.37506 1.58186 1.42140 1.12928 1.45738 1.21854 1.17253 0.96283 1.11288 0.92615 1.24148 1.01017 1.01007 0.94069 1.78255 0.89577 1.20968 1.20382 1.44560 1.08882 1.25215 1.11921 1.19925 0.94020 1.25452 1.06087 0.86441 1.25667 0.98202 0.95426 0.97800 1.70209 1.23700 1.20110 1.25340 0.85793 0.79986 0.79477 0.78805 1.19584 1.20072 1.18722 1.21308 0.98542 1.09030 0.93940 1.22614 0.95961 1.02795 0.97297 1.22944 1.04567 0.98836 0.94680 1.23296 0.94457 1.00879 1.03254 0.94078 0.93861 0.89418 0.91394 0.92141 0.74511 0.75627 0.80562 0.91373 0.83354 0.86786 0.88783 0.89002 0.89305 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.50 9.46 -35.23 -0.33 -3.83 16 3 C 0.06 0.44 5.68 37.16 0.21 0.65 16 4 C 0.18 1.78 2.67 -67.93 -0.18 1.60 16 5 H 0.10 1.04 7.34 -51.93 -0.38 0.66 16 6 N -0.69 -8.57 5.03 -54.28 -0.27 -8.84 16 7 C 0.52 7.76 7.22 -11.65 -0.08 7.68 16 8 O -0.53 -8.21 13.50 5.49 0.07 -8.14 16 9 C 0.48 8.80 7.85 -11.65 -0.09 8.71 16 10 O -0.52 -10.72 13.62 5.45 0.07 -10.64 16 11 N -0.58 -11.02 5.45 -10.46 -0.06 -11.08 16 12 C -0.07 -1.59 6.90 -83.92 -0.58 -2.17 16 13 C -0.03 -0.69 10.84 -17.02 -0.18 -0.88 16 14 N -0.26 -7.53 10.41 30.81 0.32 -7.21 16 15 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 16 C -0.32 -8.46 10.24 -14.82 -0.15 -8.62 16 17 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 18 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 19 N -0.77 -21.23 11.83 55.50 0.66 -20.57 16 20 Si 0.94 18.76 29.56 -169.99 -5.02 13.74 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 25 C -0.17 -1.71 5.22 -90.62 -0.47 -2.18 16 26 C -0.17 -1.58 10.18 -26.69 -0.27 -1.86 16 27 C -0.18 -2.09 9.74 -26.69 -0.26 -2.35 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.42 5.22 7.85 -40.82 -0.32 4.90 16 34 H 0.41 6.61 8.29 -40.82 -0.34 6.28 16 35 H 0.18 4.48 5.92 -52.49 -0.31 4.17 16 36 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 38 H 0.11 1.19 7.39 -51.93 -0.38 0.81 16 39 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.12 1.60 5.02 -51.93 -0.26 1.34 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -32.34 359.51 -5.77 -38.10 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -5.34 Total: 15.88 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.24 Total: 1.00 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.60 Total: -51.54 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.19 Total: -22.61 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.34 -5.77 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319396449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.655 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds