Wall clock time and date at job start Fri Apr 10 2020 18:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00219 * 2 1 4 4 C 1.52995 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.88506 * 302.56838 * 4 3 2 6 6 C 1.55160 * 111.03321 * 178.66809 * 4 3 2 7 7 C 1.54318 * 102.85719 * 206.21117 * 6 4 3 8 8 N 1.47014 * 107.28074 * 22.52689 * 7 6 4 9 9 C 1.34771 * 125.65127 * 180.96654 * 8 7 6 10 10 O 1.21373 * 120.00446 * 179.68831 * 9 8 7 11 11 C 1.49306 * 120.00265 * 359.69319 * 9 8 7 12 12 O 1.21407 * 119.99893 * 0.02562 * 11 9 8 13 13 N 1.34778 * 120.00556 * 179.97438 * 11 9 8 14 14 C 1.40287 * 120.00174 * 179.97438 * 13 11 9 15 15 C 1.40729 * 126.10186 * 359.97438 * 14 13 11 16 16 N 1.30875 * 108.37636 * 180.02562 * 15 14 13 17 17 N 1.40066 * 108.43733 * 359.76442 * 16 15 14 18 18 C 1.37291 * 126.05310 * 180.26643 * 17 16 15 19 19 H 1.08006 * 119.99722 * 174.29864 * 18 17 16 20 20 C 1.39003 * 120.00597 * 354.30530 * 18 17 16 21 21 N 1.31283 * 119.99786 * 5.95250 * 20 18 17 22 22 Si 1.86792 * 120.00133 * 185.95693 * 20 18 17 23 23 H 1.48495 * 109.47527 * 94.97671 * 22 20 18 24 24 H 1.48506 * 109.46918 * 214.97504 * 22 20 18 25 25 H 1.48497 * 109.47181 * 334.96974 * 22 20 18 26 26 C 1.35792 * 126.10274 * 180.02562 * 14 13 11 27 27 C 1.47431 * 108.69934 * 0.70113 * 8 7 6 28 28 H 1.08998 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47229 * 300.00366 * 1 2 3 30 30 H 1.09000 * 109.46635 * 60.00158 * 1 2 3 31 31 H 1.08993 * 109.47203 * 59.99344 * 3 2 1 32 32 H 1.09006 * 109.46584 * 299.99879 * 3 2 1 33 33 H 1.08995 * 110.72122 * 324.76456 * 6 4 3 34 34 H 1.08995 * 110.72082 * 87.86644 * 6 4 3 35 35 H 1.09004 * 109.98835 * 263.04278 * 7 6 4 36 36 H 1.08999 * 109.77350 * 141.88798 * 7 6 4 37 37 H 0.96997 * 119.99364 * 0.02562 * 13 11 9 38 38 H 1.08001 * 125.81250 * 0.03510 * 15 14 13 39 39 H 0.96998 * 120.00490 * 180.02562 * 21 20 18 40 40 H 1.07999 * 126.24768 * 359.96440 * 26 14 13 41 41 H 1.08998 * 110.36582 * 94.94172 * 27 8 7 42 42 H 1.08998 * 110.36437 * 217.25909 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8799 0.6073 0.8573 6 6 4.2050 2.5839 -0.0343 7 6 5.5693 2.2960 -0.6955 8 7 5.4278 1.0513 -1.4647 9 6 6.4040 0.4509 -2.1740 10 8 6.1745 -0.5819 -2.7688 11 6 7.7678 1.0561 -2.2279 12 8 7.9976 2.0889 -1.6324 13 7 8.7442 0.4555 -2.9367 14 6 10.0254 1.0245 -2.9878 15 6 10.4311 2.2125 -2.3517 16 7 11.6927 2.4200 -2.6310 17 7 12.1432 1.3754 -3.4481 18 6 13.4133 1.2315 -3.9491 19 1 13.6805 0.3388 -4.4951 20 6 14.3554 2.2347 -3.7536 21 7 14.0687 3.2651 -2.9924 22 14 16.0293 2.1167 -4.5741 23 1 16.0090 2.8735 -5.8516 24 1 17.0627 2.6906 -3.6752 25 1 16.3472 0.6922 -4.8476 26 6 11.0953 0.5278 -3.6605 27 6 4.0429 0.5651 -1.3266 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.6189 3.2775 -0.6373 34 1 4.3394 2.9715 0.9755 35 1 6.3358 2.1738 0.0699 36 1 5.8361 3.1157 -1.3625 37 1 8.5607 -0.3698 -3.4121 38 1 9.8075 2.8452 -1.7376 39 1 14.7259 3.9654 -2.8562 40 1 11.1145 -0.3757 -4.2519 41 1 3.4348 0.9091 -2.1632 42 1 4.0270 -0.5232 -1.2673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319960868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:03 Heat of formation + Delta-G solvation = -18.814918 kcal Electronic energy + Delta-G solvation = -26397.315362 eV Core-core repulsion = 22380.157460 eV Total energy + Delta-G solvation = -4017.157902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.66305 -39.69543 -38.76589 -37.85875 -37.20652 -34.39988 -33.21974 -32.48756 -30.31776 -29.71354 -28.15528 -27.48096 -26.19508 -25.07694 -23.80347 -22.42577 -21.05505 -20.75529 -19.69171 -19.38035 -17.75828 -17.39920 -16.99022 -16.50096 -16.30091 -16.10238 -15.51324 -15.32075 -15.13832 -14.72766 -14.42509 -14.01245 -13.82679 -13.70615 -13.26298 -13.08160 -12.98625 -12.79368 -12.64479 -12.31364 -11.86325 -11.74539 -11.67994 -11.42470 -11.30037 -11.22750 -11.08481 -10.98060 -10.81217 -10.54491 -10.26365 -10.07806 -9.22684 -9.04292 -8.86337 -8.78924 -8.12113 -6.76544 -6.60670 -4.27242 1.69225 2.49415 2.93613 3.04171 3.09300 3.28001 3.34107 3.70888 3.72452 3.87681 4.21564 4.30416 4.38036 4.54346 4.62898 4.84268 4.91180 4.96659 4.97577 4.99998 5.02316 5.08321 5.17870 5.28991 5.30913 5.49205 5.63002 5.77781 5.80838 5.93851 6.12476 6.21575 6.37360 6.73413 6.78070 6.89950 6.94726 7.16920 7.24429 7.71469 7.84009 8.12710 8.19279 8.50671 8.70701 9.32098 9.60479 10.35514 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.047182 B = 0.002114 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.308392 B =13241.484135 C =13768.222604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.073 3.927 4 C -0.102 4.102 5 H 0.096 0.904 6 C -0.128 4.128 7 C 0.109 3.891 8 N -0.596 5.596 9 C 0.528 3.472 10 O -0.529 6.529 11 C 0.487 3.513 12 O -0.519 6.519 13 N -0.584 5.584 14 C -0.068 4.068 15 C -0.026 4.026 16 N -0.261 5.261 17 N -0.139 5.139 18 C -0.323 4.323 19 H 0.118 0.882 20 C 0.047 3.953 21 N -0.768 5.768 22 Si 0.936 3.064 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.263 1.263 26 C -0.076 4.076 27 C 0.116 3.884 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.409 0.591 38 H 0.178 0.822 39 H 0.276 0.724 40 H 0.149 0.851 41 H 0.071 0.929 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.644 -2.406 5.113 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.004 4.004 4 C -0.122 4.122 5 H 0.114 0.886 6 C -0.166 4.166 7 C -0.013 4.013 8 N -0.331 5.331 9 C 0.312 3.688 10 O -0.406 6.406 11 C 0.268 3.732 12 O -0.396 6.396 13 N -0.227 5.227 14 C -0.174 4.174 15 C -0.202 4.202 16 N -0.092 5.092 17 N 0.094 4.906 18 C -0.455 4.455 19 H 0.136 0.864 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.759 3.241 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.187 1.187 26 C -0.228 4.228 27 C -0.006 4.006 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.244 0.756 38 H 0.194 0.806 39 H 0.086 0.914 40 H 0.167 0.833 41 H 0.089 0.911 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.300 -1.441 5.428 21.062 hybrid contribution -0.376 -0.816 -0.743 1.166 sum -20.676 -2.257 4.685 21.320 Atomic orbital electron populations 1.22747 0.80873 1.02908 0.99958 1.87910 1.19787 1.27780 1.95421 1.22465 0.92294 0.84946 1.00695 1.22380 0.93413 0.97519 0.98838 0.88604 1.22754 0.95718 0.95889 1.02213 1.22174 0.97012 0.86237 0.95926 1.48199 1.10391 1.25836 1.48699 1.20014 0.85353 0.84178 0.79266 1.90739 1.82529 1.23212 1.44101 1.19537 0.85125 0.85922 0.82647 1.90634 1.81519 1.23092 1.44348 1.42133 1.08052 1.25733 1.46795 1.17254 0.84540 1.01192 1.14395 1.24135 0.94300 0.97222 1.04550 1.78248 1.09604 1.09228 1.12130 1.44552 1.06532 1.12721 1.26783 1.19927 0.84031 1.06463 1.35070 0.86435 1.25663 1.00658 0.94878 0.95884 1.70212 1.34534 1.07099 1.27542 0.85791 0.79794 0.79389 0.79081 1.19596 1.20065 1.18716 1.21314 0.88472 1.01479 1.11521 1.22273 0.81059 1.00684 0.96592 0.89539 0.94082 0.94001 0.92561 0.92790 0.90249 0.89362 0.89811 0.89889 0.75615 0.80558 0.91384 0.83349 0.91075 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.39 10.56 -35.23 -0.37 -3.76 16 3 C 0.07 0.50 5.38 37.15 0.20 0.70 16 4 C -0.10 -0.83 3.32 -88.48 -0.29 -1.13 16 5 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.13 -0.95 6.42 -24.90 -0.16 -1.11 16 7 C 0.11 1.23 5.48 -3.07 -0.02 1.22 16 8 N -0.60 -8.00 3.33 -171.09 -0.57 -8.57 16 9 C 0.53 8.71 7.91 -11.66 -0.09 8.62 16 10 O -0.53 -9.52 16.73 5.48 0.09 -9.43 16 11 C 0.49 9.08 7.82 -11.65 -0.09 8.99 16 12 O -0.52 -10.38 11.26 5.45 0.06 -10.32 16 13 N -0.58 -11.32 5.45 -10.45 -0.06 -11.38 16 14 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 15 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 16 N -0.26 -7.50 10.41 30.81 0.32 -7.18 16 17 N -0.14 -3.79 3.73 -11.40 -0.04 -3.84 16 18 C -0.32 -8.48 10.24 -14.82 -0.15 -8.63 16 19 H 0.12 2.76 7.84 -52.48 -0.41 2.35 16 20 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 21 N -0.77 -21.18 11.84 55.50 0.66 -20.52 16 22 Si 0.94 18.76 29.56 -169.99 -5.02 13.74 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 27 C 0.12 1.26 6.24 -2.53 -0.02 1.25 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.32 8.10 -51.93 -0.42 -0.10 16 33 H 0.08 0.49 8.04 -51.93 -0.42 0.07 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.04 7.59 -51.93 -0.39 0.64 16 36 H 0.08 1.01 7.68 -51.93 -0.40 0.61 16 37 H 0.41 6.92 8.29 -40.82 -0.34 6.58 16 38 H 0.18 4.40 5.92 -52.49 -0.31 4.09 16 39 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.15 2.96 8.06 -52.49 -0.42 2.54 16 41 H 0.07 0.73 8.00 -51.93 -0.42 0.31 16 42 H 0.09 1.04 8.04 -51.93 -0.42 0.62 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -33.33 357.46 -5.72 -39.05 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.62 Total: 9.55 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -0.56 Total: 7.28 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.31 Total: -51.49 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.22 Total: -23.51 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.33 -5.72 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319960868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.237 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds