Wall clock time and date at job start Fri Apr 10 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00219 * 2 1 4 4 C 1.52995 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.88506 * 302.56838 * 4 3 2 6 6 C 1.55160 * 111.03321 * 178.66809 * 4 3 2 7 7 C 1.54318 * 102.85719 * 206.21117 * 6 4 3 8 8 N 1.47014 * 107.28074 * 22.52689 * 7 6 4 9 9 C 1.34771 * 125.65127 * 180.96654 * 8 7 6 10 10 O 1.21373 * 120.00446 * 179.68831 * 9 8 7 11 11 C 1.49306 * 120.00265 * 359.69319 * 9 8 7 12 12 O 1.21407 * 119.99893 * 0.02562 * 11 9 8 13 13 N 1.34778 * 120.00556 * 179.97438 * 11 9 8 14 14 C 1.40287 * 120.00174 * 179.97438 * 13 11 9 15 15 C 1.40729 * 126.10186 * 359.97438 * 14 13 11 16 16 N 1.30875 * 108.37636 * 180.02562 * 15 14 13 17 17 N 1.40066 * 108.43733 * 359.76442 * 16 15 14 18 18 C 1.37291 * 126.05310 * 180.26643 * 17 16 15 19 19 H 1.08006 * 119.99722 * 174.29864 * 18 17 16 20 20 C 1.39003 * 120.00597 * 354.30530 * 18 17 16 21 21 N 1.31283 * 119.99786 * 5.95250 * 20 18 17 22 22 Si 1.86792 * 120.00133 * 185.95693 * 20 18 17 23 23 H 1.48495 * 109.47527 * 94.97671 * 22 20 18 24 24 H 1.48506 * 109.46918 * 214.97504 * 22 20 18 25 25 H 1.48497 * 109.47181 * 334.96974 * 22 20 18 26 26 C 1.35792 * 126.10274 * 180.02562 * 14 13 11 27 27 C 1.47431 * 108.69934 * 0.70113 * 8 7 6 28 28 H 1.08998 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47229 * 300.00366 * 1 2 3 30 30 H 1.09000 * 109.46635 * 60.00158 * 1 2 3 31 31 H 1.08993 * 109.47203 * 59.99344 * 3 2 1 32 32 H 1.09006 * 109.46584 * 299.99879 * 3 2 1 33 33 H 1.08995 * 110.72122 * 324.76456 * 6 4 3 34 34 H 1.08995 * 110.72082 * 87.86644 * 6 4 3 35 35 H 1.09004 * 109.98835 * 263.04278 * 7 6 4 36 36 H 1.08999 * 109.77350 * 141.88798 * 7 6 4 37 37 H 0.96997 * 119.99364 * 0.02562 * 13 11 9 38 38 H 1.08001 * 125.81250 * 0.03510 * 15 14 13 39 39 H 0.96998 * 120.00490 * 180.02562 * 21 20 18 40 40 H 1.07999 * 126.24768 * 359.96440 * 26 14 13 41 41 H 1.08998 * 110.36582 * 94.94172 * 27 8 7 42 42 H 1.08998 * 110.36437 * 217.25909 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8799 0.6073 0.8573 6 6 4.2050 2.5839 -0.0343 7 6 5.5693 2.2960 -0.6955 8 7 5.4278 1.0513 -1.4647 9 6 6.4040 0.4509 -2.1740 10 8 6.1745 -0.5819 -2.7688 11 6 7.7678 1.0561 -2.2279 12 8 7.9976 2.0889 -1.6324 13 7 8.7442 0.4555 -2.9367 14 6 10.0254 1.0245 -2.9878 15 6 10.4311 2.2125 -2.3517 16 7 11.6927 2.4200 -2.6310 17 7 12.1432 1.3754 -3.4481 18 6 13.4133 1.2315 -3.9491 19 1 13.6805 0.3388 -4.4951 20 6 14.3554 2.2347 -3.7536 21 7 14.0687 3.2651 -2.9924 22 14 16.0293 2.1167 -4.5741 23 1 16.0090 2.8735 -5.8516 24 1 17.0627 2.6906 -3.6752 25 1 16.3472 0.6922 -4.8476 26 6 11.0953 0.5278 -3.6605 27 6 4.0429 0.5651 -1.3266 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.6189 3.2775 -0.6373 34 1 4.3394 2.9715 0.9755 35 1 6.3358 2.1738 0.0699 36 1 5.8361 3.1157 -1.3625 37 1 8.5607 -0.3698 -3.4121 38 1 9.8075 2.8452 -1.7376 39 1 14.7259 3.9654 -2.8562 40 1 11.1145 -0.3757 -4.2519 41 1 3.4348 0.9091 -2.1632 42 1 4.0270 -0.5232 -1.2673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319960868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:02 Heat of formation + Delta-G solvation = -43.130270 kcal Electronic energy + Delta-G solvation = -26398.369755 eV Core-core repulsion = 22380.157460 eV Total energy + Delta-G solvation = -4018.212295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.10783 -41.33541 -39.89992 -39.06536 -38.11072 -36.08985 -35.03148 -33.44960 -32.29949 -30.51479 -29.93296 -28.34350 -27.23641 -26.57789 -24.93910 -23.54107 -22.89258 -21.57891 -21.35306 -20.91655 -19.39656 -18.80203 -17.95121 -17.63990 -17.43629 -17.13770 -16.88223 -16.79463 -16.24501 -15.97047 -15.57271 -15.50197 -15.27628 -14.88289 -14.81698 -14.58159 -14.09283 -13.90124 -13.52635 -13.41711 -13.28107 -13.03169 -12.95349 -12.84224 -12.53666 -12.40356 -12.08406 -12.05775 -11.97621 -11.87049 -11.63139 -11.07814 -10.87589 -10.58233 -10.50865 -10.14382 -9.90435 -8.62558 -8.49907 -6.26987 0.25341 1.19246 1.28609 1.41404 1.58913 1.71219 2.01415 2.10453 2.43106 2.51729 2.76646 2.87771 3.06131 3.38389 3.55385 3.59149 3.94568 4.25749 4.32359 4.34382 4.39057 4.48467 4.51800 4.59171 4.63694 4.66003 4.74715 4.83059 4.92028 4.93812 4.95098 4.97640 5.00383 5.14530 5.22122 5.28864 5.31919 5.90538 6.01528 6.19352 6.27735 6.37004 6.63899 6.72708 7.05176 7.40760 7.62234 8.49723 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.047182 B = 0.002114 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.308392 B =13241.484135 C =13768.222604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.074 3.926 4 C -0.093 4.093 5 H 0.091 0.909 6 C -0.112 4.112 7 C 0.101 3.899 8 N -0.589 5.589 9 C 0.530 3.470 10 O -0.548 6.548 11 C 0.489 3.511 12 O -0.532 6.532 13 N -0.584 5.584 14 C -0.056 4.056 15 C -0.046 4.046 16 N -0.308 5.308 17 N -0.163 5.163 18 C -0.354 4.354 19 H 0.141 0.859 20 C -0.004 4.004 21 N -0.820 5.820 22 Si 1.020 2.980 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.244 1.244 26 C -0.075 4.075 27 C 0.111 3.889 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.422 0.578 38 H 0.177 0.823 39 H 0.278 0.722 40 H 0.187 0.813 41 H 0.082 0.918 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.073 -2.953 4.877 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C -0.003 4.003 4 C -0.112 4.112 5 H 0.109 0.891 6 C -0.150 4.150 7 C -0.021 4.021 8 N -0.322 5.322 9 C 0.313 3.687 10 O -0.426 6.426 11 C 0.270 3.730 12 O -0.410 6.410 13 N -0.229 5.229 14 C -0.162 4.162 15 C -0.221 4.221 16 N -0.139 5.139 17 N 0.069 4.931 18 C -0.485 4.485 19 H 0.158 0.842 20 C -0.216 4.216 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.191 1.191 24 H -0.200 1.200 25 H -0.167 1.167 26 C -0.226 4.226 27 C -0.010 4.010 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.259 0.741 38 H 0.194 0.806 39 H 0.088 0.912 40 H 0.204 0.796 41 H 0.101 0.899 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.795 -1.998 5.212 22.499 hybrid contribution -0.148 -0.666 -0.601 0.909 sum -21.943 -2.665 4.611 22.580 Atomic orbital electron populations 1.22894 0.79484 1.03584 1.00984 1.87867 1.21423 1.28916 1.95665 1.22517 0.90828 0.84655 1.02259 1.22338 0.94714 0.97417 0.96766 0.89096 1.22731 0.93049 0.95833 1.03374 1.22343 0.99475 0.84931 0.95356 1.48347 1.10768 1.26025 1.47105 1.19491 0.84909 0.84169 0.80150 1.90731 1.82608 1.23917 1.45365 1.20063 0.85936 0.85468 0.81499 1.90626 1.82054 1.23744 1.44530 1.42073 1.06871 1.26352 1.47603 1.17293 0.85997 1.00097 1.12831 1.24247 0.94015 0.98507 1.05339 1.78146 1.10941 1.11097 1.13760 1.44830 1.07656 1.13164 1.27473 1.20654 0.84268 1.07857 1.35764 0.84180 1.26880 1.04946 0.93933 0.95888 1.70374 1.36353 1.08369 1.29662 0.84568 0.73748 0.80281 0.77566 1.19150 1.19984 1.16690 1.21990 0.87656 1.01909 1.11020 1.22506 0.79526 1.00140 0.98830 0.89197 0.92829 0.93150 0.90534 0.91604 0.88200 0.87151 0.91093 0.90807 0.74082 0.80592 0.91199 0.79618 0.89937 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.43 10.56 -148.98 -1.57 -8.00 16 3 C 0.07 0.79 5.38 71.98 0.39 1.18 16 4 C -0.09 -1.30 3.32 -9.41 -0.03 -1.33 16 5 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 6 C -0.11 -1.35 6.42 31.78 0.20 -1.14 16 7 C 0.10 2.18 5.48 86.73 0.48 2.66 16 8 N -0.59 -15.34 3.33 -813.57 -2.71 -18.04 16 9 C 0.53 17.31 7.91 87.23 0.69 18.00 16 10 O -0.55 -19.44 16.73 -3.32 -0.06 -19.50 16 11 C 0.49 18.26 7.82 87.22 0.68 18.95 16 12 O -0.53 -21.61 11.26 -3.42 -0.04 -21.65 16 13 N -0.58 -22.48 5.45 -305.32 -1.66 -24.15 16 14 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 15 C -0.05 -2.43 10.85 85.44 0.93 -1.51 16 16 N -0.31 -18.30 10.41 -56.43 -0.59 -18.89 16 17 N -0.16 -9.05 3.73 -189.98 -0.71 -9.76 16 18 C -0.35 -18.71 10.24 84.02 0.86 -17.85 16 19 H 0.14 6.44 7.84 -2.91 -0.02 6.42 16 20 C 0.00 -0.22 5.50 84.96 0.47 0.25 16 21 N -0.82 -46.67 11.84 21.66 0.26 -46.41 16 22 Si 1.02 38.27 29.56 68.60 2.03 40.30 16 23 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 25 H -0.24 -8.30 7.11 99.48 0.71 -7.59 16 26 C -0.07 -3.53 11.50 83.41 0.96 -2.57 16 27 C 0.11 2.26 6.24 86.85 0.54 2.80 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.56 8.10 -2.38 -0.02 0.54 16 33 H 0.10 0.86 8.04 -2.39 -0.02 0.84 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.73 7.59 -2.39 -0.02 1.71 16 36 H 0.07 1.75 7.68 -2.39 -0.02 1.74 16 37 H 0.42 13.94 8.29 -92.71 -0.77 13.18 16 38 H 0.18 9.15 5.92 -2.91 -0.02 9.13 16 39 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.19 7.07 8.06 -2.91 -0.02 7.04 16 41 H 0.08 1.52 8.00 -2.39 -0.02 1.50 16 42 H 0.07 1.69 8.04 -2.39 -0.02 1.67 16 Total: -1.00 -74.85 357.46 2.91 -71.94 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: 0.29 Total: 35.59 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 7.67 Total: 18.57 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -5.41 Total: -117.26 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -1.67 Total: -49.15 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -74.85 2.91 -71.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319960868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.809 kcal (2) G-P(sol) polarization free energy of solvation -74.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds