Wall clock time and date at job start Fri Apr 10 2020 18:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99935 * 2 1 4 4 H 1.08998 * 110.64069 * 328.31401 * 3 2 1 5 5 C 1.55448 * 110.70807 * 205.00306 * 3 2 1 6 6 C 1.54905 * 101.45165 * 206.14636 * 5 3 2 7 7 N 1.47419 * 104.92834 * 37.00468 * 6 5 3 8 8 C 1.34781 * 125.65221 * 155.83963 * 7 6 5 9 9 O 1.21355 * 120.00492 * 179.97438 * 8 7 6 10 10 C 1.49350 * 119.99629 * 359.97142 * 8 7 6 11 11 O 1.21379 * 119.99652 * 0.02562 * 10 8 7 12 12 N 1.34770 * 119.99896 * 179.97438 * 10 8 7 13 13 C 1.39935 * 119.99723 * 179.97438 * 12 10 8 14 14 C 1.40455 * 125.98296 * 0.02562 * 13 12 10 15 15 C 1.35215 * 107.86841 * 180.02562 * 14 13 12 16 16 N 1.34983 * 107.87621 * 359.97438 * 15 14 13 17 17 C 1.46504 * 125.97206 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.46833 * 125.00543 * 17 16 15 19 19 H 1.07997 * 120.00263 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99765 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99641 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99902 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47388 * 89.99416 * 22 20 18 24 24 H 1.48496 * 109.46831 * 209.99988 * 22 20 18 25 25 H 1.48509 * 109.46939 * 329.99428 * 22 20 18 26 26 N 1.31275 * 125.97737 * 179.69326 * 13 12 10 27 27 C 1.47026 * 108.70576 * 335.81449 * 7 6 5 28 28 H 1.09002 * 109.47133 * 59.99816 * 1 2 3 29 29 H 1.08999 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47037 * 300.00037 * 1 2 3 31 31 H 1.09002 * 111.11560 * 88.08951 * 5 3 2 32 32 H 1.09004 * 111.00873 * 324.15360 * 5 3 2 33 33 H 1.09002 * 110.36692 * 278.10842 * 6 5 3 34 34 H 1.08995 * 110.36664 * 155.89643 * 6 5 3 35 35 H 0.97001 * 120.00031 * 0.02562 * 12 10 8 36 36 H 1.07999 * 126.06309 * 359.97438 * 14 13 12 37 37 H 1.08001 * 126.06263 * 180.02562 * 15 14 13 38 38 H 1.09001 * 109.47214 * 245.00419 * 17 16 15 39 39 H 1.08999 * 109.46845 * 5.00278 * 17 16 15 40 40 H 0.97001 * 119.99254 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.88266 * 120.47537 * 27 7 6 42 42 H 1.09000 * 109.88221 * 241.64354 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3736 2.0095 -0.5358 5 6 3.4377 1.2717 -0.6146 6 6 4.0979 2.4922 0.0738 7 7 3.5563 2.4939 1.4449 8 6 4.1460 3.0496 2.5219 9 8 3.6063 2.9909 3.6072 10 6 5.4639 3.7378 2.3796 11 8 6.0035 3.7968 1.2939 12 7 6.0534 4.2939 3.4563 13 6 7.2884 4.9382 3.3230 14 6 8.0216 5.0791 2.1333 15 6 9.1543 5.7587 2.4220 16 7 9.1435 6.0403 3.7421 17 6 10.1831 6.7666 4.4756 18 6 9.5646 7.9361 5.1973 19 1 8.5035 8.1202 5.1173 20 6 10.3537 8.7717 5.9589 21 7 11.6460 8.5478 6.0559 22 14 9.5870 10.2209 6.8541 23 1 9.1604 9.7951 8.2112 24 1 10.5841 11.3153 6.9692 25 1 8.4069 10.7046 6.0933 26 7 7.9617 5.5221 4.2870 27 6 2.2658 1.7893 1.4429 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.4029 1.4044 -1.6959 32 1 3.9543 0.3483 -0.3523 33 1 3.8255 3.4125 -0.4428 34 1 5.1815 2.3760 0.0942 35 1 5.6219 4.2470 4.3238 36 1 7.7323 4.7093 1.1607 37 1 9.9297 6.0291 1.7206 38 1 10.6509 6.0992 5.1993 39 1 10.9361 7.1286 3.7755 40 1 12.2011 9.1355 6.5921 41 1 2.3089 0.9349 2.1183 42 1 1.4718 2.4692 1.7521 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323704828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:06 Heat of formation + Delta-G solvation = -11.211332 kcal Electronic energy + Delta-G solvation = -26280.766534 eV Core-core repulsion = 22263.938348 eV Total energy + Delta-G solvation = -4016.828186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22255 -40.41972 -39.26546 -38.26725 -36.84281 -34.92891 -33.38329 -31.56530 -31.05432 -29.43429 -29.33853 -27.36746 -26.87256 -25.40191 -23.47639 -22.58503 -21.76504 -21.00976 -20.07294 -19.52200 -17.93794 -17.69268 -16.95432 -16.61683 -16.59176 -16.24114 -15.79525 -15.49772 -15.20255 -14.94315 -14.84787 -14.37936 -14.07962 -13.89442 -13.47907 -13.37490 -12.94138 -12.87564 -12.48153 -12.41053 -12.30712 -12.22564 -11.91925 -11.81108 -11.47512 -11.09607 -11.06257 -10.89135 -10.54672 -10.28348 -10.24678 -10.03259 -9.55400 -9.50112 -9.13247 -8.65600 -8.24625 -7.59758 -6.26749 -4.31871 1.17071 1.88484 2.63702 2.94366 2.99547 3.23446 3.29170 3.29365 3.34683 3.64222 3.69272 4.01090 4.09081 4.28116 4.34866 4.47642 4.75874 4.84110 4.88602 4.92007 5.08678 5.18762 5.21030 5.29714 5.40105 5.41497 5.48680 5.64686 5.70371 5.75194 6.09211 6.32028 6.40256 6.62038 6.77994 6.84915 7.00538 7.21095 7.26205 7.55442 7.67808 7.83665 7.93085 7.96283 8.52588 8.76704 9.34029 10.82061 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.002148 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.945787 B =13032.279061 C =13579.718795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.075 3.925 4 H 0.083 0.917 5 C -0.130 4.130 6 C 0.095 3.905 7 N -0.589 5.589 8 C 0.530 3.470 9 O -0.515 6.515 10 C 0.517 3.483 11 O -0.496 6.496 12 N -0.598 5.598 13 C 0.251 3.749 14 C -0.285 4.285 15 C 0.054 3.946 16 N -0.314 5.314 17 C 0.257 3.743 18 C -0.530 4.530 19 H 0.069 0.931 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.909 3.091 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.272 1.272 26 N -0.294 5.294 27 C 0.084 3.916 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.423 0.577 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.267 0.733 41 H 0.085 0.915 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.476 -14.924 -15.374 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.292 6.292 3 C 0.016 3.984 4 H 0.101 0.899 5 C -0.168 4.168 6 C -0.027 4.027 7 N -0.325 5.325 8 C 0.312 3.688 9 O -0.390 6.390 10 C 0.297 3.703 11 O -0.369 6.369 12 N -0.246 5.246 13 C -0.002 4.002 14 C -0.316 4.316 15 C -0.097 4.097 16 N -0.096 5.096 17 C 0.140 3.860 18 C -0.568 4.568 19 H 0.088 0.912 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.736 3.264 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.197 1.197 26 N -0.126 5.126 27 C -0.039 4.039 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.261 0.739 36 H 0.179 0.821 37 H 0.188 0.812 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.953 -14.628 -14.100 27.113 hybrid contribution -0.759 0.879 0.209 1.180 sum -18.712 -13.749 -13.891 27.058 Atomic orbital electron populations 1.22872 0.80589 1.03195 1.00308 1.87972 1.20097 1.26372 1.94714 1.23236 0.95650 0.85423 0.94057 0.89881 1.23021 0.93567 0.99408 1.00829 1.22749 1.01713 0.98107 0.80105 1.47996 1.21312 1.54198 1.08960 1.19574 0.85671 0.80008 0.83506 1.90800 1.64705 1.58154 1.25378 1.19728 0.85819 0.80333 0.84381 1.90653 1.63995 1.56614 1.25656 1.41977 1.18066 1.52111 1.12424 1.19001 0.87826 0.99305 0.94072 1.21503 0.97011 1.13713 0.99403 1.22583 0.99898 0.99930 0.87248 1.49175 1.14782 1.39771 1.05880 1.19805 0.82707 0.91111 0.92418 1.21248 0.95581 1.09948 1.30068 0.91249 1.24946 0.94784 0.98193 0.96131 1.69917 1.04399 1.38803 1.40149 0.86312 0.78917 0.81169 0.80022 1.20289 1.20975 1.19715 1.77417 0.96791 1.18070 1.20275 1.22550 0.85105 0.97517 0.98684 0.93682 0.89290 0.93692 0.88767 0.89193 0.90258 0.87084 0.73945 0.82127 0.81228 0.93535 0.92353 0.92290 0.89712 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.88 101.05 1.10 1.22 16 2 O -0.37 -2.79 10.43 -35.23 -0.37 -3.15 16 3 C 0.08 0.49 3.41 -24.74 -0.08 0.41 16 4 H 0.08 0.40 7.88 -51.93 -0.41 -0.01 16 5 C -0.13 -0.81 6.83 -24.43 -0.17 -0.98 16 6 C 0.10 0.79 6.06 -2.53 -0.02 0.77 16 7 N -0.59 -6.20 3.33 -171.07 -0.57 -6.77 16 8 C 0.53 7.08 7.91 -11.63 -0.09 6.99 16 9 O -0.52 -7.92 16.80 5.49 0.09 -7.83 16 10 C 0.52 7.64 7.82 -11.64 -0.09 7.55 16 11 O -0.50 -7.49 10.90 5.47 0.06 -7.43 16 12 N -0.60 -9.84 5.43 -11.58 -0.06 -9.91 16 13 C 0.25 4.97 8.10 -154.55 -1.25 3.71 16 14 C -0.29 -5.33 9.60 -39.82 -0.38 -5.71 16 15 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 16 N -0.31 -7.14 3.67 -62.56 -0.23 -7.37 16 17 C 0.26 6.42 6.26 -5.19 -0.03 6.39 16 18 C -0.53 -14.63 9.23 -34.44 -0.32 -14.95 16 19 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 22 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 N -0.29 -6.74 12.42 31.41 0.39 -6.35 16 27 C 0.08 0.72 6.64 -3.06 -0.02 0.70 16 28 H 0.04 0.16 8.11 -51.93 -0.42 -0.27 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 1.06 6.15 -51.93 -0.32 0.74 16 35 H 0.42 6.47 8.29 -40.82 -0.34 6.13 16 36 H 0.16 2.77 5.91 -52.49 -0.31 2.46 16 37 H 0.17 2.58 8.06 -52.49 -0.42 2.15 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.08 0.80 8.06 -51.93 -0.42 0.39 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -32.39 360.40 -6.75 -39.14 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.56 Total: 3.76 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.65 Total: 8.53 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.26 Total: -54.77 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.22 Total: -18.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.39 -6.75 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323704828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.931 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds