Wall clock time and date at job start Fri Apr 10 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28782 * 125.45027 * 2 1 4 4 N 1.28988 * 108.72876 * 179.97438 * 3 2 1 5 5 C 1.33315 * 107.35703 * 0.02562 * 4 3 2 6 6 C 1.50693 * 126.55293 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47256 * 90.02552 * 6 5 4 8 8 C 1.34782 * 120.00166 * 180.02562 * 7 6 5 9 9 O 1.21350 * 119.99528 * 359.97438 * 8 7 6 10 10 C 1.49446 * 120.00084 * 179.97438 * 8 7 6 11 11 O 1.21356 * 119.99803 * 353.37756 * 10 8 7 12 12 N 1.34768 * 120.00057 * 173.37736 * 10 8 7 13 13 C 1.46923 * 120.63140 * 353.06161 * 12 10 8 14 14 C 1.53197 * 108.77603 * 126.41596 * 13 12 10 15 15 C 1.53036 * 109.34037 * 54.62030 * 14 13 12 16 16 C 1.53043 * 109.53781 * 298.68543 * 15 14 13 17 17 H 1.09000 * 109.49772 * 301.34791 * 16 15 14 18 18 C 1.50699 * 109.49861 * 181.28187 * 16 15 14 19 19 H 1.08009 * 119.99826 * 0.06421 * 18 16 15 20 20 C 1.37874 * 120.00391 * 180.34183 * 18 16 15 21 21 N 1.31511 * 119.99935 * 359.72505 * 20 18 16 22 22 Si 1.86803 * 120.00371 * 179.72468 * 20 18 16 23 23 H 1.48502 * 109.47059 * 89.99815 * 22 20 18 24 24 H 1.48498 * 109.47106 * 209.99770 * 22 20 18 25 25 H 1.48506 * 109.46912 * 330.00086 * 22 20 18 26 26 C 1.46927 * 120.63303 * 173.08900 * 12 10 8 27 27 N 1.28882 * 125.44857 * 180.28954 * 2 1 3 28 28 H 1.09004 * 109.46799 * 90.02409 * 1 2 3 29 29 H 1.09000 * 109.46643 * 210.02096 * 1 2 3 30 30 H 1.09000 * 109.46939 * 330.02879 * 1 2 3 31 31 H 1.09007 * 109.47437 * 330.02339 * 6 5 4 32 32 H 1.09010 * 109.47462 * 210.02361 * 6 5 4 33 33 H 0.96996 * 120.00059 * 359.97438 * 7 6 5 34 34 H 1.08998 * 109.59171 * 246.19792 * 13 12 10 35 35 H 1.09003 * 109.58922 * 6.48999 * 13 12 10 36 36 H 1.08995 * 109.50150 * 174.58993 * 14 13 12 37 37 H 1.09009 * 109.49617 * 294.68452 * 14 13 12 38 38 H 1.08997 * 109.49188 * 178.64856 * 15 14 13 39 39 H 1.09001 * 109.43006 * 58.68768 * 15 14 13 40 40 H 0.97000 * 120.00590 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.59192 * 113.79627 * 26 12 10 42 42 H 1.08998 * 109.70190 * 353.44355 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2120 1.0491 0.0000 4 7 3.4473 0.6780 0.0005 5 6 3.4621 -0.6551 0.0003 6 6 4.6825 -1.5391 0.0013 7 7 5.0764 -1.8263 1.3829 8 6 6.1496 -2.6034 1.6300 9 8 6.7892 -3.0654 0.7081 10 6 6.5517 -2.8959 3.0393 11 8 5.9883 -2.3395 3.9590 12 7 7.5398 -3.7776 3.2890 13 6 8.1278 -4.5709 2.2010 14 6 9.6476 -4.3795 2.2168 15 6 10.1872 -4.7225 3.6072 16 6 9.5701 -3.7796 4.6427 17 1 9.8093 -2.7481 4.3837 18 6 10.1258 -4.0975 6.0069 19 1 10.8480 -4.8921 6.1240 20 6 9.7082 -3.3781 7.1064 21 7 8.8288 -2.4107 6.9638 22 14 10.3913 -3.7773 8.7985 23 1 11.6121 -2.9680 9.0431 24 1 9.3722 -3.4604 9.8311 25 1 10.7326 -5.2210 8.8665 26 6 8.0494 -3.9643 4.6543 27 7 2.2125 -1.0499 -0.0053 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 5.4995 -1.0312 -0.5113 32 1 4.4553 -2.4729 -0.5133 33 1 4.5653 -1.4567 2.1197 34 1 7.8908 -5.6247 2.3477 35 1 7.7251 -4.2354 1.2452 36 1 10.1048 -5.0364 1.4769 37 1 9.8862 -3.3425 1.9801 38 1 11.2714 -4.6102 3.6145 39 1 9.9273 -5.7521 3.8531 40 1 8.5351 -1.9042 7.7372 41 1 7.8059 -4.9686 5.0012 42 1 7.5970 -3.2285 5.3192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328392418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:18 Heat of formation + Delta-G solvation = 81.970545 kcal Electronic energy + Delta-G solvation = -26985.415038 eV Core-core repulsion = 23004.920272 eV Total energy + Delta-G solvation = -3980.494765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.75848 -40.54510 -38.37789 -36.88395 -36.08131 -34.97172 -33.45356 -33.10027 -31.71680 -29.77611 -29.70262 -27.78592 -25.63827 -24.96053 -23.57524 -23.07835 -22.07408 -21.78010 -20.33406 -18.91610 -17.98934 -17.90115 -17.35178 -16.63868 -16.21443 -15.77961 -15.44055 -15.16751 -14.63124 -14.54299 -14.24529 -14.05362 -13.96558 -13.76396 -13.38506 -13.24273 -13.15811 -12.73540 -12.58100 -12.26487 -12.07038 -11.78331 -11.43702 -11.38851 -11.33951 -10.97427 -10.72309 -10.66925 -10.43888 -10.26928 -10.05501 -9.88122 -9.42621 -9.21404 -9.10697 -8.54020 -8.41331 -7.82518 -6.01009 -4.09150 0.78746 1.48645 1.57983 1.74024 2.74565 3.31075 3.37907 3.38498 3.40790 3.60552 3.80381 3.95162 4.33854 4.37765 4.42591 4.65703 4.66303 4.94557 5.19917 5.29562 5.32447 5.35207 5.62696 5.68191 5.70858 5.82378 6.02332 6.26054 6.40839 6.57962 6.61919 6.75194 6.87194 7.00648 7.02057 7.15790 7.18550 7.60001 7.82808 7.92548 7.93553 7.96298 8.15501 8.35804 8.56589 8.94923 9.56374 11.04568 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002700 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.705024 B =10366.139210 C =11399.108379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.139 5.139 3 N -0.059 5.059 4 N -0.264 5.264 5 C 0.150 3.850 6 C 0.221 3.779 7 N -0.701 5.701 8 C 0.519 3.481 9 O -0.509 6.509 10 C 0.497 3.503 11 O -0.523 6.523 12 N -0.565 5.565 13 C 0.050 3.950 14 C -0.128 4.128 15 C -0.113 4.113 16 C 0.040 3.960 17 H 0.030 0.970 18 C -0.518 4.518 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.883 5.883 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.108 3.892 27 N -0.288 5.288 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.415 0.585 34 H 0.055 0.945 35 H 0.144 0.856 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.048 0.952 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.329 1.716 -16.349 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.051 5.051 3 N -0.052 5.052 4 N -0.136 5.136 5 C -0.133 4.133 6 C 0.095 3.905 7 N -0.356 5.356 8 C 0.302 3.698 9 O -0.386 6.386 10 C 0.277 3.723 11 O -0.400 6.400 12 N -0.297 5.297 13 C -0.072 4.072 14 C -0.166 4.166 15 C -0.151 4.151 16 C 0.021 3.979 17 H 0.048 0.952 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.520 5.520 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.011 4.011 27 N -0.140 5.140 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.252 0.748 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.680 2.365 -16.404 23.514 hybrid contribution 0.245 -0.425 1.338 1.425 sum -16.435 1.941 -15.066 22.380 Atomic orbital electron populations 1.22504 0.68779 1.07182 1.06175 1.50127 1.10934 1.00857 1.43207 1.79044 0.96391 1.14161 1.15651 1.75928 1.09914 1.10857 1.16853 1.25444 0.93030 0.90821 1.04000 1.19426 0.89427 0.97070 0.84616 1.45706 1.30309 1.51260 1.08374 1.20791 0.79865 0.78198 0.90928 1.90323 1.51675 1.50016 1.46621 1.19627 0.82542 0.82213 0.87871 1.90772 1.53279 1.50847 1.45129 1.48436 1.32986 1.36539 1.11749 1.23082 0.94915 0.95120 0.94048 1.21857 0.94915 1.01371 0.98438 1.21665 0.99535 0.99979 0.93922 1.18979 0.90025 0.95274 0.93622 0.95214 1.21095 1.24879 1.18213 0.91516 0.92238 1.25062 0.94938 0.94819 0.99274 1.69867 1.30709 1.20929 1.30519 0.86570 0.78706 0.78686 0.83906 1.20659 1.21192 1.19894 1.22500 0.97927 1.01993 0.78724 1.74738 1.03173 1.15376 1.20762 0.87852 0.86882 0.86711 0.87364 0.87761 0.74815 0.92662 0.84013 0.92241 0.92266 0.93058 0.93259 0.92630 0.93328 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.23 11.63 59.85 0.70 0.93 16 2 N -0.14 -1.19 4.40 -16.69 -0.07 -1.26 16 3 N -0.06 -0.65 13.25 60.35 0.80 0.15 16 4 N -0.26 -3.34 12.50 32.44 0.41 -2.94 16 5 C 0.15 1.69 7.74 -156.62 -1.21 0.47 16 6 C 0.22 2.34 6.30 -5.20 -0.03 2.30 16 7 N -0.70 -9.29 5.54 -61.90 -0.34 -9.63 16 8 C 0.52 8.39 7.78 -11.58 -0.09 8.30 16 9 O -0.51 -8.30 13.10 5.50 0.07 -8.22 16 10 C 0.50 10.02 7.74 -11.59 -0.09 9.93 16 11 O -0.52 -12.00 15.95 5.49 0.09 -11.91 16 12 N -0.57 -11.77 2.97 -173.27 -0.51 -12.29 16 13 C 0.05 0.88 6.27 -3.71 -0.02 0.86 16 14 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 15 C -0.11 -2.34 5.11 -26.69 -0.14 -2.47 16 16 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.52 -14.08 8.57 -34.44 -0.30 -14.37 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.88 -25.57 11.38 55.43 0.63 -24.94 16 22 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.11 2.64 5.38 -3.71 -0.02 2.62 16 27 N -0.29 -2.97 12.13 32.46 0.39 -2.58 16 28 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.42 5.61 7.95 -40.82 -0.32 5.29 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.14 2.39 3.78 -56.75 -0.21 2.17 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.12 3.44 5.17 -51.93 -0.27 3.17 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -33.87 352.89 -5.33 -39.20 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.42 Total: 4.34 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -1.67 Total: 8.54 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 1.30 Total: -53.49 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.16 Total: -20.14 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.87 -5.33 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328392418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.171 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds