Wall clock time and date at job start Fri Apr 10 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46728 * 2 1 4 4 C 1.36582 * 119.99818 * 262.62346 * 3 2 1 5 5 H 1.07996 * 120.00361 * 191.44191 * 4 3 2 6 6 C 1.39251 * 119.99736 * 11.43933 * 4 3 2 7 7 N 1.31235 * 120.00229 * 27.21608 * 6 4 3 8 8 Si 1.86804 * 120.00065 * 207.21302 * 6 4 3 9 9 H 1.48502 * 109.47122 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46935 * 120.00137 * 8 6 4 11 11 H 1.48502 * 109.47297 * 240.00093 * 8 6 4 12 12 C 1.34771 * 120.00502 * 82.62742 * 3 2 1 13 13 O 1.21514 * 120.00198 * 182.48881 * 12 3 2 14 14 C 1.48557 * 119.99770 * 2.48953 * 12 3 2 15 15 N 1.32856 * 119.99761 * 352.50751 * 14 12 3 16 16 C 1.32987 * 120.00461 * 180.02562 * 15 14 12 17 17 N 1.38025 * 120.00027 * 179.97438 * 16 15 14 18 18 N 1.32883 * 119.99445 * 359.97438 * 16 15 14 19 19 C 1.32860 * 119.99696 * 0.02562 * 18 16 15 20 20 N 1.38024 * 120.00326 * 179.97438 * 19 18 16 21 21 C 1.47021 * 110.99448 * 236.31713 * 20 19 18 22 22 C 1.53100 * 109.25854 * 182.34687 * 21 20 19 23 23 O 1.43018 * 109.29240 * 303.22067 * 22 21 20 24 24 C 1.43014 * 113.73614 * 58.64502 * 23 22 21 25 25 C 1.47014 * 111.00167 * 359.97438 * 20 19 18 26 26 N 1.32835 * 119.99830 * 172.78105 * 14 12 3 27 27 H 1.09003 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47962 * 300.00478 * 1 2 3 29 29 H 1.09000 * 109.47075 * 60.00924 * 1 2 3 30 30 H 1.08991 * 109.47455 * 239.99509 * 2 1 3 31 31 H 1.09000 * 109.47075 * 119.99075 * 2 1 3 32 32 H 0.96998 * 119.99940 * 180.02562 * 7 6 4 33 33 H 0.97000 * 119.99454 * 180.02562 * 17 16 15 34 34 H 0.96998 * 120.00145 * 0.02562 * 17 16 15 35 35 H 1.09004 * 109.47470 * 62.43498 * 21 20 19 36 36 H 1.09004 * 109.54732 * 302.30588 * 21 20 19 37 37 H 1.09000 * 109.50821 * 183.26022 * 22 21 20 38 38 H 1.09004 * 109.50215 * 63.17154 * 22 21 20 39 39 H 1.09002 * 109.50999 * 61.26598 * 24 23 22 40 40 H 1.09002 * 109.50447 * 181.35042 * 24 23 22 41 41 H 1.08998 * 109.50395 * 57.67927 * 25 20 19 42 42 H 1.09000 * 109.54415 * 297.57106 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3890 1.9745 -1.1731 5 1 2.9181 2.9158 -1.1586 6 6 2.0847 1.3655 -2.3878 7 7 1.0442 0.5712 -2.4812 8 14 3.1576 1.6791 -3.8845 9 1 4.2597 2.6045 -3.5183 10 1 3.7287 0.3943 -4.3621 11 1 2.3375 2.2875 -4.9628 12 6 2.1016 2.0666 1.1574 13 8 2.4635 3.2266 1.1520 14 6 1.7511 1.4039 2.4400 15 7 1.2151 0.1882 2.4347 16 6 0.9008 -0.4050 3.5827 17 7 0.3434 -1.6676 3.5771 18 7 1.1234 0.2180 4.7351 19 6 1.6595 1.4337 4.7403 20 7 1.8903 2.0811 5.9372 21 6 1.2154 3.3869 5.9684 22 6 1.5449 4.0943 7.2856 23 8 1.1594 3.2583 8.3801 24 6 1.7991 1.9792 8.3807 25 6 1.4709 1.2502 7.0751 26 7 1.9687 2.0289 3.5917 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8898 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 0.8325 0.1467 -3.3273 33 1 0.1138 -2.1001 4.4144 34 1 0.1812 -2.1225 2.7358 35 1 0.1378 3.2410 5.8933 36 1 1.5600 3.9956 5.1324 37 1 1.0007 5.0372 7.3385 38 1 2.6162 4.2889 7.3361 39 1 2.8779 2.1118 8.4627 40 1 1.4393 1.3927 9.2261 41 1 2.0021 0.2988 7.0463 42 1 0.3974 1.0695 7.0187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328657982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:24 Heat of formation + Delta-G solvation = 54.522875 kcal Electronic energy + Delta-G solvation = -28213.030845 eV Core-core repulsion = 24231.345860 eV Total energy + Delta-G solvation = -3981.684986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41174 -39.66053 -38.32915 -36.48239 -35.35325 -34.75161 -32.84415 -31.95192 -31.47109 -30.95536 -29.39381 -27.69259 -26.30009 -24.51346 -23.80028 -22.96389 -22.16325 -20.96536 -19.90037 -18.79435 -17.94360 -16.88196 -16.37904 -16.32851 -15.89002 -15.75718 -15.62127 -15.20019 -14.86054 -14.73838 -14.58760 -14.23717 -14.20750 -13.90804 -13.56605 -12.78773 -12.57465 -12.42427 -12.06828 -11.79207 -11.60876 -11.56569 -11.33678 -11.19604 -10.94839 -10.84958 -10.60182 -10.40663 -10.31209 -9.95266 -9.75258 -9.35014 -9.10618 -8.98075 -8.73635 -8.53797 -8.36073 -7.82971 -6.63222 -3.90566 1.05842 1.55058 2.91964 3.03095 3.15680 3.23254 3.30533 3.66881 3.67821 3.86178 4.13954 4.40729 4.59128 4.67127 4.83971 4.91886 4.97274 5.00922 5.11190 5.16061 5.35263 5.43638 5.47868 5.70728 5.75612 5.79613 6.13091 6.30762 6.49774 6.63329 6.73635 6.79889 6.86428 6.91104 7.00816 7.13751 7.23810 7.32837 7.36449 7.69654 7.79908 7.93856 8.32420 8.79115 9.01485 9.20603 9.89261 10.32689 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.003521 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.703929 B = 7950.228963 C = 8902.735731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.115 3.885 3 N -0.384 5.384 4 C -0.296 4.296 5 H 0.114 0.886 6 C 0.038 3.962 7 N -0.827 5.827 8 Si 0.925 3.075 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.465 3.535 13 O -0.570 6.570 14 C 0.405 3.595 15 N -0.586 5.586 16 C 0.604 3.396 17 N -0.811 5.811 18 N -0.650 5.650 19 C 0.555 3.445 20 N -0.455 5.455 21 C 0.030 3.970 22 C 0.065 3.935 23 O -0.386 6.386 24 C 0.062 3.938 25 C 0.035 3.965 26 N -0.562 5.562 27 H 0.031 0.969 28 H 0.028 0.972 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.274 0.726 33 H 0.411 0.589 34 H 0.417 0.583 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 -5.112 14.403 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.008 4.008 3 N -0.099 5.099 4 C -0.426 4.426 5 H 0.131 0.869 6 C -0.171 4.171 7 N -0.463 5.463 8 Si 0.750 3.250 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.252 3.748 13 O -0.454 6.454 14 C 0.129 3.871 15 N -0.321 5.321 16 C 0.237 3.763 17 N -0.361 5.361 18 N -0.388 5.388 19 C 0.188 3.812 20 N -0.176 5.176 21 C -0.097 4.097 22 C -0.012 4.012 23 O -0.305 6.305 24 C -0.016 4.016 25 C -0.092 4.092 26 N -0.291 5.291 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.242 0.758 34 H 0.249 0.751 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.839 -4.452 14.477 15.257 hybrid contribution -0.386 -0.929 -0.974 1.400 sum -2.225 -5.381 13.503 14.705 Atomic orbital electron populations 1.21896 0.96111 0.99289 1.01432 1.21855 0.95289 0.82373 1.01326 1.43807 1.49424 1.11648 1.05047 1.20009 1.32770 1.08132 0.81724 0.86870 1.25463 0.95618 0.96515 0.99493 1.70102 1.20778 1.28370 1.27082 0.85900 0.80445 0.78717 0.79975 1.18647 1.20202 1.20438 1.16723 0.90630 0.86245 0.81166 1.90630 1.54353 1.15777 1.84629 1.23650 0.85401 0.84304 0.93756 1.69608 1.23291 1.12723 1.26478 1.19449 0.84948 0.87053 0.84864 1.41626 1.68046 1.13872 1.12545 1.68211 1.26672 1.13652 1.30275 1.20688 0.84750 0.85855 0.89866 1.58429 1.54678 1.04966 0.99504 1.22929 0.97124 0.88392 1.01243 1.22744 1.01083 0.93403 0.83960 1.87986 1.68186 1.26772 1.47510 1.22774 0.97928 0.84306 0.96550 1.22699 1.01171 0.96886 0.88479 1.68626 1.25338 1.38069 0.97115 0.94961 0.95339 0.89834 0.90324 0.90444 0.91545 0.75825 0.75104 0.92876 0.86896 0.87554 0.91596 0.92060 0.87863 0.88472 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.09 37.16 0.34 -2.40 16 2 C 0.11 2.58 4.87 -4.04 -0.02 2.56 16 3 N -0.38 -9.93 2.63 -115.66 -0.30 -10.23 16 4 C -0.30 -7.94 9.36 -15.06 -0.14 -8.08 16 5 H 0.11 3.18 7.36 -52.49 -0.39 2.80 16 6 C 0.04 0.92 4.78 -17.43 -0.08 0.84 16 7 N -0.83 -19.91 8.79 55.51 0.49 -19.42 16 8 Si 0.92 19.04 29.63 -169.99 -5.04 14.01 16 9 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 10 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 C 0.47 12.39 7.59 -12.01 -0.09 12.30 16 13 O -0.57 -16.87 16.52 5.35 0.09 -16.78 16 14 C 0.40 9.40 7.39 -156.39 -1.16 8.25 16 15 N -0.59 -11.68 4.49 -11.91 -0.05 -11.74 16 16 C 0.60 10.23 8.76 -322.22 -2.82 7.41 16 17 N -0.81 -9.44 9.05 29.84 0.27 -9.17 16 18 N -0.65 -11.06 8.88 -14.78 -0.13 -11.19 16 19 C 0.55 10.32 7.19 -322.22 -2.32 8.01 16 20 N -0.45 -6.98 4.78 -174.95 -0.84 -7.82 16 21 C 0.03 0.41 5.49 -3.71 -0.02 0.39 16 22 C 0.07 0.70 7.01 37.21 0.26 0.96 16 23 O -0.39 -4.46 10.83 -35.23 -0.38 -4.84 16 24 C 0.06 0.61 7.01 37.21 0.26 0.87 16 25 C 0.04 0.43 4.81 -3.71 -0.02 0.41 16 26 N -0.56 -12.44 9.61 -11.91 -0.11 -12.56 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.61 6.63 -51.93 -0.34 0.27 16 29 H 0.08 1.99 6.15 -51.93 -0.32 1.67 16 30 H 0.08 1.84 6.06 -51.93 -0.31 1.53 16 31 H 0.08 1.66 5.35 -51.93 -0.28 1.38 16 32 H 0.27 6.12 8.30 -40.82 -0.34 5.78 16 33 H 0.41 3.67 8.95 -40.82 -0.37 3.30 16 34 H 0.42 4.31 8.95 -40.82 -0.37 3.94 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.11 1.74 7.70 -51.93 -0.40 1.34 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 1.15 7.86 -51.93 -0.41 0.74 16 42 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -31.85 340.07 -11.96 -43.81 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.27 Total: 9.30 kcal Atomic # 6 Polarization: 37.32 SS G_CDS: -5.81 Total: 31.51 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -0.68 Total: -82.13 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.29 Total: -21.62 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.04 Total: 14.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.85 -11.96 -43.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328657982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.335 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds