Wall clock time and date at job start Fri Apr 10 2020 18:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46728 * 2 1 4 4 C 1.36582 * 119.99818 * 262.62346 * 3 2 1 5 5 H 1.07996 * 120.00361 * 191.44191 * 4 3 2 6 6 C 1.39251 * 119.99736 * 11.43933 * 4 3 2 7 7 N 1.31235 * 120.00229 * 27.21608 * 6 4 3 8 8 Si 1.86804 * 120.00065 * 207.21302 * 6 4 3 9 9 H 1.48502 * 109.47122 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46935 * 120.00137 * 8 6 4 11 11 H 1.48502 * 109.47297 * 240.00093 * 8 6 4 12 12 C 1.34771 * 120.00502 * 82.62742 * 3 2 1 13 13 O 1.21514 * 120.00198 * 182.48881 * 12 3 2 14 14 C 1.48557 * 119.99770 * 2.48953 * 12 3 2 15 15 N 1.32856 * 119.99761 * 352.50751 * 14 12 3 16 16 C 1.32987 * 120.00461 * 180.02562 * 15 14 12 17 17 N 1.38025 * 120.00027 * 179.97438 * 16 15 14 18 18 N 1.32883 * 119.99445 * 359.97438 * 16 15 14 19 19 C 1.32860 * 119.99696 * 0.02562 * 18 16 15 20 20 N 1.38024 * 120.00326 * 179.97438 * 19 18 16 21 21 C 1.47021 * 110.99448 * 236.31713 * 20 19 18 22 22 C 1.53100 * 109.25854 * 182.34687 * 21 20 19 23 23 O 1.43018 * 109.29240 * 303.22067 * 22 21 20 24 24 C 1.43014 * 113.73614 * 58.64502 * 23 22 21 25 25 C 1.47014 * 111.00167 * 359.97438 * 20 19 18 26 26 N 1.32835 * 119.99830 * 172.78105 * 14 12 3 27 27 H 1.09003 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47962 * 300.00478 * 1 2 3 29 29 H 1.09000 * 109.47075 * 60.00924 * 1 2 3 30 30 H 1.08991 * 109.47455 * 239.99509 * 2 1 3 31 31 H 1.09000 * 109.47075 * 119.99075 * 2 1 3 32 32 H 0.96998 * 119.99940 * 180.02562 * 7 6 4 33 33 H 0.97000 * 119.99454 * 180.02562 * 17 16 15 34 34 H 0.96998 * 120.00145 * 0.02562 * 17 16 15 35 35 H 1.09004 * 109.47470 * 62.43498 * 21 20 19 36 36 H 1.09004 * 109.54732 * 302.30588 * 21 20 19 37 37 H 1.09000 * 109.50821 * 183.26022 * 22 21 20 38 38 H 1.09004 * 109.50215 * 63.17154 * 22 21 20 39 39 H 1.09002 * 109.50999 * 61.26598 * 24 23 22 40 40 H 1.09002 * 109.50447 * 181.35042 * 24 23 22 41 41 H 1.08998 * 109.50395 * 57.67927 * 25 20 19 42 42 H 1.09000 * 109.54415 * 297.57106 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3890 1.9745 -1.1731 5 1 2.9181 2.9158 -1.1586 6 6 2.0847 1.3655 -2.3878 7 7 1.0442 0.5712 -2.4812 8 14 3.1576 1.6791 -3.8845 9 1 4.2597 2.6045 -3.5183 10 1 3.7287 0.3943 -4.3621 11 1 2.3375 2.2875 -4.9628 12 6 2.1016 2.0666 1.1574 13 8 2.4635 3.2266 1.1520 14 6 1.7511 1.4039 2.4400 15 7 1.2151 0.1882 2.4347 16 6 0.9008 -0.4050 3.5827 17 7 0.3434 -1.6676 3.5771 18 7 1.1234 0.2180 4.7351 19 6 1.6595 1.4337 4.7403 20 7 1.8903 2.0811 5.9372 21 6 1.2154 3.3869 5.9684 22 6 1.5449 4.0943 7.2856 23 8 1.1594 3.2583 8.3801 24 6 1.7991 1.9792 8.3807 25 6 1.4709 1.2502 7.0751 26 7 1.9687 2.0289 3.5917 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8898 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 0.8325 0.1467 -3.3273 33 1 0.1138 -2.1001 4.4144 34 1 0.1812 -2.1225 2.7358 35 1 0.1378 3.2410 5.8933 36 1 1.5600 3.9956 5.1324 37 1 1.0007 5.0372 7.3385 38 1 2.6162 4.2889 7.3361 39 1 2.8779 2.1118 8.4627 40 1 1.4393 1.3927 9.2261 41 1 2.0021 0.2988 7.0463 42 1 0.3974 1.0695 7.0187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328657982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:23 Heat of formation + Delta-G solvation = 34.521953 kcal Electronic energy + Delta-G solvation = -28213.898150 eV Core-core repulsion = 24231.345860 eV Total energy + Delta-G solvation = -3982.552291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.87684 -40.84506 -40.09596 -37.67290 -37.14239 -36.26584 -34.41648 -33.55736 -32.77688 -32.10788 -31.22029 -28.81710 -28.08777 -25.99586 -25.07568 -24.24502 -23.96854 -22.17986 -21.40641 -20.25032 -19.32571 -18.79787 -17.74160 -17.58826 -17.18588 -17.06961 -16.85529 -16.58179 -16.15817 -16.05559 -15.92274 -15.68499 -15.56419 -15.51513 -15.17342 -14.67113 -14.20377 -13.83800 -13.49672 -13.22657 -13.04634 -12.85947 -12.71403 -12.65847 -12.44732 -12.24008 -12.18159 -12.06021 -11.77674 -11.50881 -11.00635 -10.95648 -10.82106 -10.55283 -10.24305 -10.10155 -9.88892 -9.65707 -8.50998 -5.93037 -0.54940 0.10278 1.36059 1.44501 1.56207 1.66170 1.90634 2.05092 2.19608 2.46287 2.75803 2.84752 3.04335 3.14357 3.50884 3.68724 3.82299 3.88148 3.96814 4.11171 4.22918 4.39264 4.58898 4.67826 4.69641 4.73211 4.90143 4.93315 4.97182 5.04877 5.13829 5.23969 5.31956 5.34958 5.46310 5.65376 5.73514 5.89386 5.93846 6.06818 6.12841 6.39977 6.63715 7.02717 7.23653 7.39992 7.93043 8.44431 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.003521 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.703929 B = 7950.228963 C = 8902.735731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.120 3.880 3 N -0.387 5.387 4 C -0.350 4.350 5 H 0.083 0.917 6 C 0.018 3.982 7 N -0.832 5.832 8 Si 0.992 3.008 9 H -0.275 1.275 10 H -0.259 1.259 11 H -0.269 1.269 12 C 0.443 3.557 13 O -0.620 6.620 14 C 0.399 3.601 15 N -0.589 5.589 16 C 0.596 3.404 17 N -0.777 5.777 18 N -0.633 5.633 19 C 0.551 3.449 20 N -0.459 5.459 21 C 0.031 3.969 22 C 0.073 3.927 23 O -0.394 6.394 24 C 0.064 3.936 25 C 0.037 3.963 26 N -0.595 5.595 27 H 0.066 0.934 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.285 0.715 33 H 0.429 0.571 34 H 0.428 0.572 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.135 0.865 41 H 0.102 0.898 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.014 -7.407 15.734 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.002 4.002 3 N -0.101 5.101 4 C -0.479 4.479 5 H 0.101 0.899 6 C -0.191 4.191 7 N -0.466 5.466 8 Si 0.814 3.186 9 H -0.199 1.199 10 H -0.183 1.183 11 H -0.194 1.194 12 C 0.231 3.769 13 O -0.508 6.508 14 C 0.121 3.879 15 N -0.325 5.325 16 C 0.229 3.771 17 N -0.329 5.329 18 N -0.371 5.371 19 C 0.185 3.815 20 N -0.181 5.181 21 C -0.095 4.095 22 C -0.004 4.004 23 O -0.312 6.312 24 C -0.012 4.012 25 C -0.090 4.090 26 N -0.327 5.327 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.263 0.737 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.147 0.853 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.152 0.848 41 H 0.120 0.880 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.621 -6.865 15.849 17.470 hybrid contribution -0.247 -0.329 -1.259 1.325 sum -2.868 -7.194 14.590 16.518 Atomic orbital electron populations 1.21702 0.94941 1.00849 0.99569 1.21941 0.96051 0.80795 1.01383 1.44001 1.48805 1.12575 1.04720 1.19907 1.35789 1.08863 0.83322 0.89922 1.26180 0.96068 0.95749 1.01122 1.70128 1.20478 1.27650 1.28391 0.84937 0.78308 0.78985 0.76404 1.19929 1.18338 1.19443 1.17248 0.90882 0.86166 0.82567 1.90553 1.56565 1.17896 1.85821 1.22880 0.86697 0.85552 0.92807 1.69423 1.23528 1.11595 1.27992 1.19809 0.84895 0.88329 0.84093 1.41589 1.65496 1.11522 1.14249 1.68381 1.26029 1.12964 1.29745 1.21107 0.84051 0.86348 0.89996 1.58521 1.54543 1.05839 0.99150 1.22958 0.96529 0.87674 1.02374 1.22783 1.01820 0.93711 0.82051 1.87987 1.68577 1.27393 1.47260 1.22947 0.98479 0.83747 0.96066 1.22861 1.00921 0.97026 0.88177 1.68534 1.26964 1.39241 0.97917 0.91530 0.96212 0.92525 0.91286 0.89085 0.90392 0.73703 0.73826 0.93331 0.89250 0.85289 0.91042 0.91392 0.84755 0.88009 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 9.09 71.98 0.65 -4.06 16 2 C 0.12 5.46 4.87 86.38 0.42 5.88 16 3 N -0.39 -20.92 2.63 -638.13 -1.68 -22.60 16 4 C -0.35 -19.70 9.36 84.20 0.79 -18.92 16 5 H 0.08 5.04 7.36 -2.91 -0.02 5.02 16 6 C 0.02 0.88 4.78 85.03 0.41 1.29 16 7 N -0.83 -39.85 8.79 21.71 0.19 -39.66 16 8 Si 0.99 39.27 29.63 68.60 2.03 41.31 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 11 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 12 C 0.44 25.00 7.59 87.00 0.66 25.66 16 13 O -0.62 -39.51 16.52 -3.76 -0.06 -39.58 16 14 C 0.40 19.14 7.39 137.46 1.02 20.15 16 15 N -0.59 -23.33 4.49 -191.59 -0.86 -24.19 16 16 C 0.60 19.16 8.76 261.28 2.29 21.45 16 17 N -0.78 -15.60 9.05 -59.50 -0.54 -16.14 16 18 N -0.63 -20.62 8.88 -200.68 -1.78 -22.40 16 19 C 0.55 20.44 7.19 261.28 1.88 22.32 16 20 N -0.46 -13.82 4.78 -707.41 -3.38 -17.20 16 21 C 0.03 0.85 5.49 86.31 0.47 1.33 16 22 C 0.07 1.47 7.01 72.02 0.50 1.98 16 23 O -0.39 -8.09 10.83 -148.98 -1.61 -9.70 16 24 C 0.06 1.08 7.01 72.01 0.50 1.58 16 25 C 0.04 0.81 4.81 86.31 0.42 1.23 16 26 N -0.60 -27.25 9.61 -191.59 -1.84 -29.09 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.02 0.83 6.63 -2.39 -0.02 0.82 16 29 H 0.06 2.70 6.15 -2.39 -0.01 2.68 16 30 H 0.07 3.23 6.06 -2.39 -0.01 3.22 16 31 H 0.09 3.86 5.35 -2.39 -0.01 3.85 16 32 H 0.29 12.37 8.30 -92.71 -0.77 11.60 16 33 H 0.43 5.98 8.95 -92.71 -0.83 5.15 16 34 H 0.43 7.29 8.95 -92.71 -0.83 6.46 16 35 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 36 H 0.09 2.89 7.70 -2.38 -0.02 2.88 16 37 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 2.15 7.86 -2.39 -0.02 2.14 16 42 H 0.06 1.36 8.03 -2.39 -0.02 1.34 16 Total: -1.00 -73.72 340.07 -0.08 -73.80 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.56 Total: 25.57 kcal Atomic # 6 Polarization: 69.87 SS G_CDS: 10.01 Total: 79.88 kcal Atomic # 7 Polarization: -161.38 SS G_CDS: -9.89 Total: -171.28 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.68 Total: -49.28 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.31 kcal Total: -73.72 -0.08 -73.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328657982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.322 kcal (2) G-P(sol) polarization free energy of solvation -73.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds