Wall clock time and date at job start Fri Apr 10 2020 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00084 * 2 1 4 4 C 1.50701 * 109.47102 * 269.99863 * 3 2 1 5 5 H 1.07997 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99773 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99978 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00364 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47061 * 90.00133 * 8 6 4 10 10 H 1.48499 * 109.47363 * 210.00002 * 8 6 4 11 11 H 1.48498 * 109.47079 * 330.00640 * 8 6 4 12 12 C 1.34770 * 119.99842 * 180.02562 * 2 1 3 13 13 O 1.21432 * 120.00270 * 174.39546 * 12 2 1 14 14 C 1.48838 * 120.00293 * 354.66870 * 12 2 1 15 15 N 1.32736 * 119.98060 * 352.39090 * 14 12 2 16 16 C 1.33011 * 120.01516 * 179.76678 * 15 14 12 17 17 N 1.38024 * 120.01205 * 180.22734 * 16 15 14 18 18 N 1.32870 * 119.98677 * 0.50823 * 16 15 14 19 19 C 1.32838 * 119.96200 * 359.74248 * 18 16 15 20 20 N 1.38015 * 120.00593 * 179.97438 * 19 18 16 21 21 C 1.47014 * 111.00438 * 123.65638 * 20 19 18 22 22 C 1.53093 * 109.26002 * 177.60630 * 21 20 19 23 23 O 1.43011 * 109.25776 * 56.85311 * 22 21 20 24 24 C 1.43021 * 113.73986 * 301.32605 * 23 22 21 25 25 C 1.47025 * 111.00025 * 0.02562 * 20 19 18 26 26 N 1.32702 * 119.98879 * 172.66179 * 14 12 2 27 27 H 1.08999 * 109.46932 * 265.18247 * 1 2 3 28 28 H 1.09002 * 109.46747 * 25.17539 * 1 2 3 29 29 H 1.08996 * 109.47403 * 145.17991 * 1 2 3 30 30 H 1.08997 * 109.47060 * 30.00175 * 3 2 1 31 31 H 1.09004 * 109.46825 * 150.00007 * 3 2 1 32 32 H 0.96997 * 119.99858 * 179.97438 * 7 6 4 33 33 H 0.96999 * 120.00523 * 180.27585 * 17 16 15 34 34 H 0.97001 * 119.99492 * 0.28164 * 17 16 15 35 35 H 1.09004 * 109.50659 * 297.54433 * 21 20 19 36 36 H 1.09005 * 109.50385 * 57.67101 * 21 20 19 37 37 H 1.09000 * 109.50942 * 296.91174 * 22 21 20 38 38 H 1.09010 * 109.54003 * 176.80751 * 22 21 20 39 39 H 1.08998 * 109.50368 * 298.73889 * 24 23 22 40 40 H 1.08999 * 109.54470 * 178.62881 * 24 23 22 41 41 H 1.08991 * 109.50550 * 302.33274 * 25 20 19 42 42 H 1.09004 * 109.49814 * 62.46069 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.3458 3.2573 -2.9127 8 14 3.7339 3.9287 -0.2529 9 1 5.1070 3.5068 0.1237 10 1 3.7499 5.3553 -0.6648 11 1 2.8274 3.7595 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3488 -1.1697 -0.1032 14 6 1.3995 -2.4534 0.1187 15 7 0.0974 -2.4486 0.3766 16 6 -0.5649 -3.5976 0.4786 17 7 -1.9197 -3.5924 0.7422 18 7 0.0791 -4.7506 0.3324 19 6 1.3831 -4.7547 0.0792 20 7 2.0530 -5.9518 -0.0723 21 6 2.7402 -6.0104 -1.3707 22 6 3.5172 -7.3256 -1.4719 23 8 2.6166 -8.4209 -1.2862 24 6 1.9305 -8.3958 -0.0315 25 6 1.1375 -7.0914 0.0842 26 7 2.0433 -3.6045 -0.0276 27 1 -0.3633 -0.0863 1.0240 28 1 -0.3633 0.9301 -0.4372 29 1 -0.3634 -0.8436 -0.5868 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1383 0.5139 32 1 3.8226 4.0832 -3.0899 33 1 -2.4018 -4.4305 0.8205 34 1 -2.3898 -2.7507 0.8489 35 1 2.0054 -5.9589 -2.1741 36 1 3.4316 -5.1718 -1.4547 37 1 4.2878 -7.3534 -0.7016 38 1 3.9824 -7.3995 -2.4550 39 1 2.6550 -8.4547 0.7807 40 1 1.2477 -9.2434 0.0277 41 1 0.6588 -7.0420 1.0622 42 1 0.3771 -7.0571 -0.6961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361855950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:30 Heat of formation + Delta-G solvation = 44.588933 kcal Electronic energy + Delta-G solvation = -27518.537402 eV Core-core repulsion = 23536.421649 eV Total energy + Delta-G solvation = -3982.115754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.93577 -39.95004 -38.84667 -36.82665 -35.50146 -35.05818 -33.18280 -32.44613 -31.96192 -31.33736 -28.69607 -28.02323 -26.43424 -25.31769 -24.31523 -23.45415 -22.37674 -21.09766 -19.78323 -19.16598 -18.03446 -16.98207 -16.79677 -16.57685 -16.32712 -16.08566 -16.08380 -15.40856 -15.28934 -15.03331 -14.89193 -14.69730 -14.44716 -14.23562 -13.78211 -13.16529 -12.78081 -12.53474 -12.36041 -12.12261 -11.97271 -11.86127 -11.75850 -11.50353 -11.24397 -11.03408 -10.84074 -10.54198 -10.16060 -10.10679 -9.99024 -9.63518 -9.53552 -9.29402 -9.14490 -8.91066 -8.59122 -7.76075 -6.08668 -4.08205 0.54672 1.04223 2.48579 2.84843 3.07981 3.25348 3.30771 3.36192 3.38372 3.50478 3.94972 3.98699 4.34479 4.39475 4.51062 4.57785 4.71456 4.78513 4.80410 4.93094 5.22366 5.24550 5.31014 5.37267 5.49831 5.58981 5.72413 5.91653 5.95222 6.11735 6.16404 6.38345 6.47235 6.62649 6.66925 6.75200 6.84866 6.90753 7.23043 7.32766 7.57260 8.04234 8.27027 8.43779 8.75324 8.95100 9.50260 11.04612 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.003227 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.643227 B = 8673.408144 C = 9740.248948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.568 5.568 3 C 0.217 3.783 4 C -0.530 4.530 5 H 0.076 0.924 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.876 3.124 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.568 3.432 13 O -0.494 6.494 14 C 0.405 3.595 15 N -0.588 5.588 16 C 0.612 3.388 17 N -0.804 5.804 18 N -0.633 5.633 19 C 0.566 3.434 20 N -0.453 5.453 21 C 0.028 3.972 22 C 0.065 3.935 23 O -0.384 6.384 24 C 0.061 3.939 25 C 0.033 3.967 26 N -0.553 5.553 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.416 0.584 34 H 0.420 0.580 35 H 0.057 0.943 36 H 0.114 0.886 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.660 -21.122 7.678 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.300 5.300 3 C 0.097 3.903 4 C -0.569 4.569 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.348 3.652 13 O -0.365 6.365 14 C 0.123 3.877 15 N -0.323 5.323 16 C 0.244 3.756 17 N -0.354 5.354 18 N -0.371 5.371 19 C 0.200 3.800 20 N -0.174 5.174 21 C -0.099 4.099 22 C -0.012 4.012 23 O -0.303 6.303 24 C -0.016 4.016 25 C -0.094 4.094 26 N -0.283 5.283 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.247 0.753 34 H 0.252 0.748 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.510 -21.159 7.723 24.450 hybrid contribution -0.750 0.887 0.503 1.265 sum -10.260 -20.272 8.226 24.164 Atomic orbital electron populations 1.21961 0.79287 1.02552 1.01230 1.47705 1.07492 1.05836 1.68918 1.19822 0.92453 0.79270 0.98799 1.21283 1.37229 1.07318 0.91020 0.90608 1.24844 0.95146 0.97281 0.95627 1.69895 1.41299 1.23539 1.18666 0.86857 0.80223 0.79786 0.82883 1.19784 1.21024 1.18972 1.17173 0.86368 0.81217 0.80394 1.90802 1.12609 1.85254 1.47802 1.23482 0.85355 0.93787 0.85028 1.69260 1.10095 1.27758 1.25220 1.19325 0.87629 0.84406 0.84218 1.41686 1.03492 1.12968 1.77293 1.68314 1.09671 1.30093 1.28994 1.20768 0.83596 0.89965 0.85687 1.58418 1.27329 0.99249 1.32368 1.22996 0.99192 1.01704 0.85972 1.22758 0.91463 0.83692 1.03322 1.88010 1.58414 1.46748 1.37082 1.22778 0.95785 0.96404 0.86630 1.22778 0.93866 0.88366 1.04424 1.68599 1.39222 0.97144 1.23309 0.93176 0.91423 0.90323 0.94440 0.94362 0.92498 0.75269 0.74804 0.92431 0.86737 0.91441 0.87247 0.91928 0.87635 0.88299 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 9.13 59.85 0.55 2.10 16 2 N -0.57 -12.26 2.86 -183.71 -0.52 -12.79 16 3 C 0.22 5.31 4.16 -5.19 -0.02 5.28 16 4 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 5 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 8 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 12 C 0.57 12.73 7.70 -11.88 -0.09 12.64 16 13 O -0.49 -12.84 16.55 5.43 0.09 -12.75 16 14 C 0.41 7.66 7.44 -156.48 -1.16 6.50 16 15 N -0.59 -9.11 6.44 -11.87 -0.08 -9.19 16 16 C 0.61 7.92 8.76 -322.21 -2.82 5.09 16 17 N -0.80 -6.23 9.05 29.84 0.27 -5.96 16 18 N -0.63 -8.54 8.88 -14.78 -0.13 -8.67 16 19 C 0.57 8.63 7.19 -322.22 -2.32 6.32 16 20 N -0.45 -5.73 4.78 -174.95 -0.84 -6.56 16 21 C 0.03 0.32 5.50 -3.71 -0.02 0.30 16 22 C 0.06 0.59 7.01 37.21 0.26 0.85 16 23 O -0.38 -3.79 10.83 -35.23 -0.38 -4.17 16 24 C 0.06 0.48 7.01 37.21 0.26 0.74 16 25 C 0.03 0.32 4.81 -3.71 -0.02 0.30 16 26 N -0.55 -10.19 9.62 -11.88 -0.11 -10.31 16 27 H 0.05 0.72 8.02 -51.93 -0.42 0.31 16 28 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 29 H 0.08 1.26 5.77 -51.93 -0.30 0.96 16 30 H 0.04 0.86 7.13 -51.93 -0.37 0.49 16 31 H 0.04 0.99 6.93 -51.93 -0.36 0.63 16 32 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.42 2.25 8.95 -40.82 -0.37 1.88 16 34 H 0.42 2.51 8.95 -40.82 -0.37 2.14 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.49 7.70 -51.93 -0.40 1.09 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.90 7.86 -51.93 -0.41 0.50 16 42 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -36.18 349.75 -11.68 -47.85 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.52 Total: 0.81 kcal Atomic # 6 Polarization: 32.39 SS G_CDS: -5.82 Total: 26.57 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -0.64 Total: -80.27 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.29 Total: -16.92 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.18 -11.68 -47.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361855950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.441 kcal (2) G-P(sol) polarization free energy of solvation -36.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds