Wall clock time and date at job start Fri Apr 10 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48495 * 109.47321 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47323 * 300.00579 * 3 2 1 6 6 H 1.48499 * 109.46862 * 60.00576 * 3 2 1 7 7 C 1.37878 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47003 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00134 * 170.00075 * 10 9 7 12 12 C 1.53233 * 109.33964 * 187.25063 * 11 10 9 13 13 N 1.47077 * 108.52566 * 306.16876 * 12 11 10 14 14 C 1.34776 * 120.88375 * 231.18655 * 13 12 11 15 15 O 1.21600 * 119.99972 * 183.69332 * 14 13 12 16 16 C 1.47526 * 119.99966 * 3.69318 * 14 13 12 17 17 C 1.36599 * 125.77006 * 173.23938 * 16 14 13 18 18 N 1.34808 * 106.83678 * 180.13816 * 17 16 14 19 19 C 1.46506 * 126.59366 * 179.91166 * 18 17 16 20 20 C 1.50691 * 109.47390 * 124.70767 * 19 18 17 21 21 N 1.34777 * 120.00156 * 179.72712 * 20 19 18 22 22 O 1.21290 * 119.99953 * 359.97438 * 20 19 18 23 23 N 1.40209 * 106.81518 * 359.64109 * 18 17 16 24 24 N 1.28766 * 108.36293 * 0.22883 * 23 18 17 25 25 C 1.47084 * 118.23353 * 51.45970 * 13 12 11 26 26 C 1.46905 * 111.00070 * 294.30222 * 10 9 7 27 27 H 0.97007 * 120.00240 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47370 * 60.00301 * 9 7 2 29 29 H 1.09000 * 109.46870 * 300.00149 * 9 7 2 30 30 H 1.09004 * 109.49129 * 67.29605 * 11 10 9 31 31 H 1.08996 * 109.51310 * 307.23109 * 11 10 9 32 32 H 1.09008 * 109.62933 * 186.45560 * 12 11 10 33 33 H 1.09001 * 109.62996 * 65.88282 * 12 11 10 34 34 H 1.07998 * 126.57852 * 0.02562 * 17 16 14 35 35 H 1.08996 * 109.46859 * 4.70231 * 19 18 17 36 36 H 1.09002 * 109.46900 * 244.70890 * 19 18 17 37 37 H 0.96998 * 120.00313 * 180.27690 * 21 20 19 38 38 H 0.96997 * 120.00041 * 0.26951 * 21 20 19 39 39 H 1.08997 * 109.63224 * 68.25413 * 25 13 12 40 40 H 1.08998 * 109.62452 * 188.83419 * 25 13 12 41 41 H 1.08999 * 109.49080 * 292.70764 * 26 10 9 42 42 H 1.08998 * 109.49415 * 52.78537 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5211 -4.8935 0.2376 12 6 2.5637 -6.0031 0.4103 13 7 3.4615 -5.9862 -0.7545 14 6 3.7118 -7.1123 -1.4514 15 8 4.5082 -7.0944 -2.3701 16 6 3.0195 -8.3667 -1.0997 17 6 3.0828 -9.5373 -1.8008 18 7 2.3092 -10.4266 -1.1466 19 6 2.0678 -11.8206 -1.5273 20 6 2.4267 -12.7250 -0.3767 21 7 2.2798 -14.0593 -0.4970 22 8 2.8437 -12.2518 0.6593 23 7 1.7850 -9.7628 -0.0284 24 7 2.2241 -8.5523 -0.0325 25 6 4.0837 -4.7089 -1.1350 26 6 2.9767 -3.6491 -1.2505 27 1 -0.4851 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5570 0.8897 30 1 0.8795 -5.1264 -0.6123 31 1 0.9156 -4.8194 1.1408 32 1 2.0631 -6.9694 0.4728 33 1 3.1393 -5.8265 1.3189 34 1 3.6435 -9.7155 -2.7065 35 1 2.6811 -12.0723 -2.3925 36 1 1.0150 -11.9517 -1.7778 37 1 2.5070 -14.6412 0.2450 38 1 1.9466 -14.4377 -1.3257 39 1 4.8026 -4.4102 -0.3721 40 1 4.5884 -4.8191 -2.0947 41 1 2.3148 -3.8992 -2.0796 42 1 3.4271 -2.6722 -1.4262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363183402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:32 Heat of formation + Delta-G solvation = 61.310043 kcal Electronic energy + Delta-G solvation = -26837.348342 eV Core-core repulsion = 22855.957670 eV Total energy + Delta-G solvation = -3981.390672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.49653 -40.08482 -39.49354 -37.35431 -35.07141 -34.42261 -34.16216 -32.32665 -31.35557 -30.53957 -29.05772 -28.03949 -25.54491 -23.86101 -23.45178 -22.60994 -21.86772 -21.38701 -20.51791 -19.19355 -18.25533 -17.82386 -17.08602 -16.61360 -16.32926 -16.13438 -15.78614 -15.54157 -15.03001 -14.72583 -14.65650 -14.25755 -14.21543 -13.75953 -13.66674 -13.50391 -13.33389 -12.76195 -12.45191 -12.13947 -11.99925 -11.37932 -11.18290 -11.12954 -10.80192 -10.71332 -10.61620 -10.47525 -10.46447 -10.40678 -10.28380 -9.90281 -9.59612 -9.45182 -9.13839 -8.42752 -8.31516 -7.19823 -5.99673 -4.00979 0.87770 1.54139 1.64388 1.84411 2.68456 3.14608 3.33950 3.34340 3.41318 3.46413 3.81764 3.98204 4.07150 4.22278 4.43806 4.48103 4.74410 4.96385 5.00715 5.28031 5.36666 5.55596 5.64770 5.80629 5.87168 5.91912 5.98541 6.07501 6.09164 6.42425 6.49822 6.53307 6.58474 6.64995 6.86072 7.33348 7.37587 7.49511 7.58246 7.81050 7.83880 8.11542 8.22282 8.28092 8.57681 9.06914 9.63264 11.11200 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033617 B = 0.002354 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.709085 B =11889.447638 C =12366.552789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.044 3.956 12 C 0.078 3.922 13 N -0.587 5.587 14 C 0.599 3.401 15 O -0.552 6.552 16 C -0.086 4.086 17 C 0.091 3.909 18 N -0.358 5.358 19 C 0.104 3.896 20 C 0.504 3.496 21 N -0.850 5.850 22 O -0.507 6.507 23 N -0.034 5.034 24 N -0.202 5.202 25 C 0.115 3.885 26 C 0.052 3.948 27 H 0.260 0.740 28 H -0.010 1.010 29 H 0.032 0.968 30 H 0.023 0.977 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.072 0.928 34 H 0.206 0.794 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.410 0.590 38 H 0.404 0.596 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.024 0.976 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.485 -30.411 -6.660 31.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.086 4.086 12 C -0.046 4.046 13 N -0.318 5.318 14 C 0.385 3.615 15 O -0.430 6.430 16 C -0.223 4.223 17 C -0.064 4.064 18 N -0.143 5.143 19 C -0.022 4.022 20 C 0.285 3.715 21 N -0.416 5.416 22 O -0.379 6.379 23 N -0.014 5.014 24 N -0.075 5.075 25 C -0.007 4.007 26 C -0.077 4.077 27 H 0.070 0.930 28 H 0.008 0.992 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.223 0.777 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.242 0.758 38 H 0.232 0.768 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.042 0.958 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.443 -29.854 -4.927 30.453 hybrid contribution 0.162 0.311 -1.604 1.642 sum 3.604 -29.543 -6.531 30.470 Atomic orbital electron populations 1.69971 1.06077 1.26632 1.51134 1.25001 0.94868 0.99352 0.95487 0.86440 0.80108 0.83424 0.77438 1.19609 1.21186 1.21057 1.21205 0.93549 0.89899 1.49851 0.91720 1.19726 0.90050 0.87281 0.96150 1.62093 1.28021 1.02819 1.33293 1.22378 0.95026 0.90488 1.00660 1.22955 0.91995 1.02622 0.87020 1.48044 1.45906 1.07944 1.29901 1.16789 0.81195 0.81598 0.81947 1.90768 1.36137 1.85031 1.31065 1.21498 1.07039 0.96895 0.96912 1.23271 0.94893 0.88693 0.99523 1.49804 1.34277 1.10190 1.20075 1.21716 1.06206 0.76654 0.97616 1.20357 0.78485 0.83499 0.89167 1.43696 1.70238 1.06935 1.20760 1.90923 1.43137 1.74840 1.29026 1.82162 1.18445 0.99110 1.01683 1.74289 1.08224 1.08201 1.16805 1.22028 0.95901 0.81376 1.01420 1.22410 0.95074 0.98979 0.91214 0.93012 0.99189 0.95034 0.95851 0.90136 0.84821 0.90992 0.77704 0.84620 0.85179 0.75847 0.76763 0.90653 0.89348 0.95788 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.30 8.41 -34.44 -0.29 -14.59 16 8 H 0.06 1.80 7.13 -52.49 -0.37 1.43 16 9 C 0.19 5.11 4.72 -4.98 -0.02 5.09 16 10 N -0.54 -11.93 4.62 -235.47 -1.09 -13.01 16 11 C 0.04 0.84 5.62 -3.70 -0.02 0.82 16 12 C 0.08 1.31 6.44 -3.61 -0.02 1.29 16 13 N -0.59 -10.09 3.00 -173.41 -0.52 -10.61 16 14 C 0.60 9.86 7.70 -12.47 -0.10 9.77 16 15 O -0.55 -9.85 16.34 5.28 0.09 -9.77 16 16 C -0.09 -1.20 6.77 -83.55 -0.57 -1.77 16 17 C 0.09 0.90 11.28 -16.84 -0.19 0.71 16 18 N -0.36 -3.29 3.41 -62.24 -0.21 -3.50 16 19 C 0.10 0.35 7.02 -5.20 -0.04 0.31 16 20 C 0.50 2.96 8.13 -10.99 -0.09 2.87 16 21 N -0.85 -1.15 8.87 31.22 0.28 -0.87 16 22 O -0.51 -6.18 16.57 5.55 0.09 -6.09 16 23 N -0.03 -0.47 12.88 60.35 0.78 0.31 16 24 N -0.20 -3.01 8.66 32.85 0.28 -2.73 16 25 C 0.11 2.00 6.62 -3.36 -0.02 1.98 16 26 C 0.05 1.06 5.47 -3.46 -0.02 1.04 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H -0.01 -0.28 8.13 -51.93 -0.42 -0.70 16 29 H 0.03 0.89 7.97 -51.93 -0.41 0.48 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.50 7.99 -51.93 -0.41 1.09 16 32 H 0.14 2.17 3.75 -117.85 -0.44 1.72 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.21 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.14 -0.14 8.08 -51.93 -0.42 -0.56 16 36 H 0.13 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.41 0.56 8.93 -40.82 -0.36 0.20 16 38 H 0.40 -0.99 8.83 -40.82 -0.36 -1.35 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.48 7.08 -51.93 -0.37 1.11 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 2.05 6.67 -51.93 -0.35 1.70 16 LS Contribution 353.77 15.07 5.33 5.33 Total: -1.00 -39.74 353.77 -6.33 -46.07 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -5.60 Total: -4.67 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -1.47 Total: 8.96 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.25 Total: -56.66 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.18 Total: -15.86 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.74 -6.33 -46.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363183402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.380 kcal (2) G-P(sol) polarization free energy of solvation -39.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds