Wall clock time and date at job start Fri Apr 10 2020 18:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00008 * 2 1 4 4 C 1.52995 * 109.47180 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47309 * 66.96334 * 4 3 2 6 6 C 1.46897 * 111.00225 * 289.71291 * 5 4 3 7 7 C 1.50696 * 109.47101 * 299.52881 * 6 5 4 8 8 H 1.07999 * 120.00316 * 354.89309 * 7 6 5 9 9 C 1.37878 * 119.99887 * 174.89498 * 7 6 5 10 10 N 1.31516 * 120.00173 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99909 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47200 * 90.00120 * 11 9 7 13 13 H 1.48501 * 109.46527 * 209.99862 * 11 9 7 14 14 H 1.48494 * 109.47095 * 329.99594 * 11 9 7 15 15 C 1.46906 * 110.99494 * 53.66831 * 5 4 3 16 16 C 1.50694 * 109.47374 * 66.04495 * 15 5 4 17 17 C 1.37863 * 120.05211 * 115.01932 * 16 15 5 18 18 C 1.40203 * 118.64331 * 179.97438 * 17 16 15 19 19 O 1.22154 * 120.60590 * 180.02562 * 18 17 16 20 20 N 1.34833 * 118.78848 * 0.02562 * 18 17 16 21 21 N 1.40059 * 132.22874 * 179.97438 * 20 18 17 22 22 C 1.30425 * 108.29055 * 179.97438 * 21 20 18 23 23 N 1.38302 * 125.54818 * 180.26616 * 22 21 20 24 24 N 1.37071 * 108.90408 * 359.97438 * 22 21 20 25 25 H 0.96991 * 125.92903 * 179.97438 * 24 22 21 26 26 C 1.35154 * 120.21632 * 359.97438 * 20 18 17 27 27 N 1.32338 * 121.08170 * 0.02562 * 26 20 18 28 28 H 1.09002 * 109.47430 * 299.99735 * 1 2 3 29 29 H 1.09005 * 109.47249 * 59.99802 * 1 2 3 30 30 H 1.08997 * 109.46833 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46843 * 59.99958 * 3 2 1 32 32 H 1.09002 * 109.47477 * 300.00466 * 3 2 1 33 33 H 1.09007 * 109.47346 * 306.96421 * 4 3 2 34 34 H 1.09004 * 109.47229 * 186.97202 * 4 3 2 35 35 H 1.09006 * 109.46889 * 59.52795 * 6 5 4 36 36 H 1.08997 * 109.47015 * 179.52895 * 6 5 4 37 37 H 0.96995 * 120.00313 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.46787 * 306.04328 * 15 5 4 39 39 H 1.09004 * 109.46799 * 186.04802 * 15 5 4 40 40 H 1.08002 * 120.68300 * 359.95776 * 17 16 15 41 41 H 0.96998 * 119.99905 * 179.69300 * 23 22 21 42 42 H 0.96996 * 119.99963 * 359.69112 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9803 0.6060 -1.2754 6 6 3.6066 -0.8116 -1.3690 7 6 4.2589 -1.5781 -0.2476 8 1 4.9529 -1.0812 0.4141 9 6 3.9698 -2.9140 -0.0662 10 7 3.1243 -3.5191 -0.8716 11 14 4.7779 -3.8641 1.3245 12 1 3.9341 -3.7715 2.5430 13 1 4.9244 -5.2885 0.9309 14 1 6.1173 -3.2877 1.6048 15 6 3.4476 1.3672 -2.4134 16 6 4.0478 2.7494 -2.4183 17 6 4.8706 3.1412 -3.4527 18 6 5.4126 4.4340 -3.4277 19 8 6.1456 4.8186 -4.3260 20 7 5.1099 5.2451 -2.3940 21 7 5.4843 6.5595 -2.0879 22 6 4.9173 6.8950 -0.9622 23 7 5.0422 8.1202 -0.3329 24 7 4.1724 5.8379 -0.5078 25 1 3.6487 5.8198 0.3083 26 6 4.2975 4.8117 -1.4046 27 7 3.7850 3.5918 -1.4265 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8492 0.5398 0.8203 34 1 3.9782 2.1729 0.1241 35 1 2.5234 -0.9075 -1.2928 36 1 3.9405 -1.2129 -2.3258 37 1 2.9212 -4.4590 -0.7442 38 1 2.3637 1.4420 -2.3250 39 1 3.7021 0.8573 -3.3426 40 1 5.0934 2.4660 -4.2657 41 1 4.5794 8.2852 0.5035 42 1 5.5925 8.8145 -0.7278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363773470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:35 Heat of formation + Delta-G solvation = 81.571388 kcal Electronic energy + Delta-G solvation = -27854.774587 eV Core-core repulsion = 23874.262513 eV Total energy + Delta-G solvation = -3980.512074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.31591 -39.74897 -38.30928 -37.20760 -35.88110 -34.98499 -34.03100 -32.44181 -31.04746 -30.38891 -28.85200 -27.59540 -25.87814 -24.87084 -24.37158 -22.82141 -22.53801 -22.02460 -19.72862 -19.10763 -18.89021 -17.54361 -17.22889 -17.11299 -16.58394 -16.22354 -15.92875 -15.71820 -14.92783 -14.77918 -14.50529 -14.31624 -14.13281 -14.00789 -13.50607 -12.96908 -12.83246 -12.07738 -11.99670 -11.84608 -11.54449 -11.41048 -11.29592 -11.06268 -11.02622 -10.87434 -10.62178 -10.54770 -10.23822 -10.16194 -9.79694 -9.57081 -9.22012 -8.98458 -8.87140 -8.23939 -7.91191 -7.04037 -5.84128 -3.81272 0.71959 1.30222 1.38172 1.64932 2.11903 3.29613 3.41663 3.47426 3.51357 3.69976 3.96007 4.10059 4.51105 4.57788 4.75878 4.80964 5.23695 5.42768 5.53181 5.56198 5.67279 5.67875 5.73287 5.84946 5.92732 5.99072 6.07241 6.15065 6.20884 6.28312 6.36274 6.49519 6.56092 6.74559 6.94868 7.12927 7.40238 7.74571 7.80048 7.92442 7.95880 8.01829 8.19327 8.36982 8.70848 9.23678 9.79292 11.27351 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.003428 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.877178 B = 8166.834267 C = 8574.046970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.348 6.348 3 C 0.031 3.969 4 C 0.063 3.937 5 N -0.525 5.525 6 C 0.181 3.819 7 C -0.491 4.491 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.890 3.110 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.094 3.906 16 C 0.247 3.753 17 C -0.314 4.314 18 C 0.550 3.450 19 O -0.530 6.530 20 N -0.361 5.361 21 N -0.330 5.330 22 C 0.550 3.450 23 N -0.813 5.813 24 N -0.622 5.622 25 H 0.446 0.554 26 C 0.547 3.453 27 N -0.537 5.537 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.019 0.981 37 H 0.257 0.743 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.167 0.833 41 H 0.420 0.580 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 22.891 4.397 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C -0.047 4.047 4 C -0.066 4.066 5 N -0.248 5.248 6 C 0.057 3.943 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.537 5.537 11 Si 0.718 3.282 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.035 4.035 16 C 0.121 3.879 17 C -0.343 4.343 18 C 0.354 3.646 19 O -0.405 6.405 20 N -0.170 5.170 21 N -0.165 5.165 22 C 0.181 3.819 23 N -0.372 5.372 24 N -0.258 5.258 25 H 0.289 0.711 26 C 0.191 3.809 27 N -0.273 5.273 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.184 0.816 41 H 0.252 0.748 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.788 22.714 3.364 23.131 hybrid contribution -0.983 0.052 1.590 1.871 sum -3.771 22.766 4.954 23.602 Atomic orbital electron populations 1.22650 0.83883 1.02111 0.98163 1.88466 1.17201 1.26296 1.94607 1.23259 0.97397 0.85374 0.98693 1.22318 0.89631 1.00163 0.94454 1.62407 1.57806 1.05442 0.99172 1.20085 0.97496 0.79640 0.97058 1.21011 1.24554 0.94130 1.13288 0.92490 1.24855 0.95403 0.97657 0.96246 1.69952 1.35002 1.10801 1.37950 0.86637 0.79724 0.79147 0.82650 1.21010 1.21548 1.20070 1.21151 0.97248 0.86885 0.98226 1.21426 0.87767 0.93561 0.85182 1.22568 1.09637 0.95542 1.06548 1.17018 0.83374 0.84379 0.79805 1.90966 1.38829 1.75081 1.35630 1.48481 1.37593 1.10287 1.20616 1.77959 1.28927 0.95750 1.13848 1.20099 0.88388 0.84289 0.89129 1.41014 1.58192 1.09739 1.28265 1.41968 1.48467 1.10053 1.25346 0.71076 1.19938 0.88708 0.88546 0.83669 1.67751 1.31734 0.97779 1.30004 0.95509 0.95381 0.90108 0.94996 0.93741 0.89305 0.89939 0.94189 0.96251 0.93363 0.92453 0.88695 0.81583 0.74839 0.73316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.35 -7.15 7.58 -35.23 -0.27 -7.42 16 3 C 0.03 0.54 5.66 37.15 0.21 0.75 16 4 C 0.06 1.20 5.18 -3.83 -0.02 1.18 16 5 N -0.52 -10.96 4.74 -237.52 -1.13 -12.09 16 6 C 0.18 4.59 4.31 -4.98 -0.02 4.57 16 7 C -0.49 -13.67 8.21 -34.44 -0.28 -13.95 16 8 H 0.06 1.59 7.00 -52.49 -0.37 1.22 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 11 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.09 1.62 5.04 -4.98 -0.03 1.60 16 16 C 0.25 3.93 6.22 -82.34 -0.51 3.42 16 17 C -0.31 -5.13 9.71 -38.98 -0.38 -5.51 16 18 C 0.55 9.89 7.71 -15.50 -0.12 9.77 16 19 O -0.53 -11.22 17.96 4.78 0.09 -11.14 16 20 N -0.36 -5.51 3.78 -15.90 -0.06 -5.57 16 21 N -0.33 -4.29 12.63 30.25 0.38 -3.90 16 22 C 0.55 4.23 9.47 -319.40 -3.02 1.21 16 23 N -0.81 -1.78 9.06 30.24 0.27 -1.50 16 24 N -0.62 -4.66 6.17 -14.20 -0.09 -4.75 16 25 H 0.45 1.60 8.96 -40.82 -0.37 1.23 16 26 C 0.55 6.94 9.00 -321.70 -2.90 4.04 16 27 N -0.54 -7.67 7.75 -10.05 -0.08 -7.74 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.04 0.73 5.79 -51.93 -0.30 0.43 16 33 H 0.09 1.92 6.33 -51.93 -0.33 1.59 16 34 H 0.08 1.41 5.90 -51.93 -0.31 1.10 16 35 H 0.04 1.08 5.28 -51.93 -0.27 0.81 16 36 H 0.02 0.53 8.04 -51.93 -0.42 0.11 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.06 0.98 5.71 -51.93 -0.30 0.68 16 39 H 0.09 1.58 7.77 -51.93 -0.40 1.18 16 40 H 0.17 2.52 7.98 -52.49 -0.42 2.11 16 41 H 0.42 -0.50 8.95 -40.82 -0.37 -0.87 16 42 H 0.43 0.52 8.95 -40.82 -0.37 0.16 16 LS Contribution 348.34 15.07 5.25 5.25 Total: -1.00 -38.53 348.34 -11.00 -49.53 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.04 Total: -1.98 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: -6.05 Total: 10.24 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.04 Total: -61.41 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.18 Total: -18.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -38.53 -11.00 -49.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363773470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.103 kcal (2) G-P(sol) polarization free energy of solvation -38.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds