Wall clock time and date at job start Fri Apr 10 2020 18:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00008 * 2 1 4 4 C 1.52995 * 109.47180 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47309 * 66.96334 * 4 3 2 6 6 C 1.46897 * 111.00225 * 289.71291 * 5 4 3 7 7 C 1.50696 * 109.47101 * 299.52881 * 6 5 4 8 8 H 1.07999 * 120.00316 * 354.89309 * 7 6 5 9 9 C 1.37878 * 119.99887 * 174.89498 * 7 6 5 10 10 N 1.31516 * 120.00173 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99909 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47200 * 90.00120 * 11 9 7 13 13 H 1.48501 * 109.46527 * 209.99862 * 11 9 7 14 14 H 1.48494 * 109.47095 * 329.99594 * 11 9 7 15 15 C 1.46906 * 110.99494 * 53.66831 * 5 4 3 16 16 C 1.50694 * 109.47374 * 66.04495 * 15 5 4 17 17 C 1.37863 * 120.05211 * 115.01932 * 16 15 5 18 18 C 1.40203 * 118.64331 * 179.97438 * 17 16 15 19 19 O 1.22154 * 120.60590 * 180.02562 * 18 17 16 20 20 N 1.34833 * 118.78848 * 0.02562 * 18 17 16 21 21 N 1.40059 * 132.22874 * 179.97438 * 20 18 17 22 22 C 1.30425 * 108.29055 * 179.97438 * 21 20 18 23 23 N 1.38302 * 125.54818 * 180.26616 * 22 21 20 24 24 N 1.37071 * 108.90408 * 359.97438 * 22 21 20 25 25 H 0.96991 * 125.92903 * 179.97438 * 24 22 21 26 26 C 1.35154 * 120.21632 * 359.97438 * 20 18 17 27 27 N 1.32338 * 121.08170 * 0.02562 * 26 20 18 28 28 H 1.09002 * 109.47430 * 299.99735 * 1 2 3 29 29 H 1.09005 * 109.47249 * 59.99802 * 1 2 3 30 30 H 1.08997 * 109.46833 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46843 * 59.99958 * 3 2 1 32 32 H 1.09002 * 109.47477 * 300.00466 * 3 2 1 33 33 H 1.09007 * 109.47346 * 306.96421 * 4 3 2 34 34 H 1.09004 * 109.47229 * 186.97202 * 4 3 2 35 35 H 1.09006 * 109.46889 * 59.52795 * 6 5 4 36 36 H 1.08997 * 109.47015 * 179.52895 * 6 5 4 37 37 H 0.96995 * 120.00313 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.46787 * 306.04328 * 15 5 4 39 39 H 1.09004 * 109.46799 * 186.04802 * 15 5 4 40 40 H 1.08002 * 120.68300 * 359.95776 * 17 16 15 41 41 H 0.96998 * 119.99905 * 179.69300 * 23 22 21 42 42 H 0.96996 * 119.99963 * 359.69112 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9803 0.6060 -1.2754 6 6 3.6066 -0.8116 -1.3690 7 6 4.2589 -1.5781 -0.2476 8 1 4.9529 -1.0812 0.4141 9 6 3.9698 -2.9140 -0.0662 10 7 3.1243 -3.5191 -0.8716 11 14 4.7779 -3.8641 1.3245 12 1 3.9341 -3.7715 2.5430 13 1 4.9244 -5.2885 0.9309 14 1 6.1173 -3.2877 1.6048 15 6 3.4476 1.3672 -2.4134 16 6 4.0478 2.7494 -2.4183 17 6 4.8706 3.1412 -3.4527 18 6 5.4126 4.4340 -3.4277 19 8 6.1456 4.8186 -4.3260 20 7 5.1099 5.2451 -2.3940 21 7 5.4843 6.5595 -2.0879 22 6 4.9173 6.8950 -0.9622 23 7 5.0422 8.1202 -0.3329 24 7 4.1724 5.8379 -0.5078 25 1 3.6487 5.8198 0.3083 26 6 4.2975 4.8117 -1.4046 27 7 3.7850 3.5918 -1.4265 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8492 0.5398 0.8203 34 1 3.9782 2.1729 0.1241 35 1 2.5234 -0.9075 -1.2928 36 1 3.9405 -1.2129 -2.3258 37 1 2.9212 -4.4590 -0.7442 38 1 2.3637 1.4420 -2.3250 39 1 3.7021 0.8573 -3.3426 40 1 5.0934 2.4660 -4.2657 41 1 4.5794 8.2852 0.5035 42 1 5.5925 8.8145 -0.7278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363773470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:34 Heat of formation + Delta-G solvation = 54.040698 kcal Electronic energy + Delta-G solvation = -27855.968408 eV Core-core repulsion = 23874.262513 eV Total energy + Delta-G solvation = -3981.705894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.30526 -40.88406 -39.76649 -38.50609 -37.17763 -35.98956 -34.90912 -34.47206 -32.18197 -31.53137 -30.41343 -29.22014 -27.24413 -26.53508 -25.42555 -24.28439 -23.60352 -23.37956 -21.21251 -20.12977 -19.83113 -18.64389 -18.28893 -18.22250 -17.87170 -17.37752 -17.20376 -17.05114 -16.59290 -16.22233 -15.85369 -15.74214 -15.54687 -15.33891 -14.98891 -14.38968 -13.96453 -13.90649 -13.48500 -12.99023 -12.93961 -12.80089 -12.73712 -12.61034 -12.50020 -12.41752 -12.35043 -11.89872 -11.71765 -11.61864 -11.54422 -11.15054 -10.81329 -10.49919 -10.19796 -9.96575 -9.11720 -8.71725 -8.00695 -6.04170 -0.42815 0.38093 0.41527 0.81157 1.14741 1.45970 1.46892 1.57039 2.42352 2.51184 2.53656 3.09788 3.16497 3.18856 3.34126 3.55187 3.71109 3.81334 4.22946 4.32191 4.40392 4.47622 4.57060 4.62819 4.68374 4.72685 4.83733 4.90004 4.93461 5.03208 5.30790 5.34735 5.42634 5.54215 5.72206 5.77938 5.84727 6.06804 6.26450 6.46714 6.56908 6.59163 6.63077 6.80181 6.88377 7.10677 7.60457 9.10444 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.003428 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.877178 B = 8166.834267 C = 8574.046970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.393 6.393 3 C 0.037 3.963 4 C 0.067 3.933 5 N -0.536 5.536 6 C 0.197 3.803 7 C -0.499 4.499 8 H 0.051 0.949 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.953 3.047 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.271 1.271 15 C 0.099 3.901 16 C 0.258 3.742 17 C -0.326 4.326 18 C 0.542 3.458 19 O -0.579 6.579 20 N -0.368 5.368 21 N -0.383 5.383 22 C 0.572 3.428 23 N -0.776 5.776 24 N -0.593 5.593 25 H 0.467 0.533 26 C 0.552 3.448 27 N -0.540 5.540 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.027 0.973 36 H -0.010 1.010 37 H 0.257 0.743 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.167 0.833 41 H 0.441 0.559 42 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 25.377 6.976 26.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.312 6.312 3 C -0.041 4.041 4 C -0.061 4.061 5 N -0.260 5.260 6 C 0.072 3.928 7 C -0.538 4.538 8 H 0.069 0.931 9 C -0.190 4.190 10 N -0.571 5.571 11 Si 0.779 3.221 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.195 1.195 15 C -0.030 4.030 16 C 0.129 3.871 17 C -0.356 4.356 18 C 0.347 3.653 19 O -0.458 6.458 20 N -0.174 5.174 21 N -0.222 5.222 22 C 0.203 3.797 23 N -0.338 5.338 24 N -0.232 5.232 25 H 0.316 0.684 26 C 0.195 3.805 27 N -0.275 5.275 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.045 0.955 36 H 0.008 0.992 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.185 0.815 41 H 0.277 0.723 42 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -3.567 25.318 6.078 26.281 hybrid contribution -0.809 -0.488 0.925 1.322 sum -4.377 24.831 7.003 26.168 Atomic orbital electron populations 1.22753 0.81891 1.02124 1.00157 1.88375 1.19585 1.28272 1.94975 1.23224 0.95806 0.84606 1.00442 1.22277 0.91362 1.00153 0.92304 1.62217 1.58793 1.03779 1.01211 1.19687 0.96243 0.82179 0.94663 1.21289 1.24237 0.94625 1.13631 0.93073 1.25631 0.96046 0.98700 0.98603 1.70074 1.36365 1.11036 1.39594 0.85637 0.78930 0.77657 0.79827 1.20276 1.21285 1.19526 1.21076 0.97700 0.87317 0.96894 1.21078 0.87403 0.93122 0.85519 1.22521 1.10369 0.95497 1.07195 1.17082 0.83192 0.84991 0.79992 1.90917 1.41094 1.76232 1.37602 1.48217 1.37440 1.11387 1.20388 1.77989 1.32377 0.94736 1.17079 1.20299 0.86318 0.85290 0.87769 1.41172 1.56988 1.07419 1.28220 1.41860 1.47929 1.08397 1.25002 0.68420 1.20124 0.87681 0.88768 0.83949 1.67657 1.32072 0.98376 1.29385 0.92961 0.93769 0.91225 0.92276 0.92602 0.92322 0.87745 0.95548 0.99246 0.93381 0.91642 0.88723 0.81516 0.72274 0.72150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.39 -15.93 7.58 -148.98 -1.13 -17.06 16 3 C 0.04 1.21 5.66 71.98 0.41 1.61 16 4 C 0.07 2.50 5.18 86.30 0.45 2.94 16 5 N -0.54 -22.59 4.74 -905.36 -4.29 -26.88 16 6 C 0.20 10.29 4.31 85.56 0.37 10.66 16 7 C -0.50 -28.30 8.21 25.60 0.21 -28.09 16 8 H 0.05 2.90 7.00 -2.91 -0.02 2.88 16 9 C 0.01 0.44 5.46 84.65 0.46 0.90 16 10 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 11 Si 0.95 45.39 29.54 68.60 2.03 47.41 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 C 0.10 3.42 5.04 85.55 0.43 3.85 16 16 C 0.26 8.09 6.22 42.33 0.26 8.35 16 17 C -0.33 -10.92 9.71 22.66 0.22 -10.70 16 18 C 0.54 19.93 7.71 84.71 0.65 20.58 16 19 O -0.58 -25.57 17.96 -5.82 -0.10 -25.67 16 20 N -0.37 -10.99 3.78 -322.21 -1.22 -12.20 16 21 N -0.38 -9.41 12.63 -58.22 -0.74 -10.14 16 22 C 0.57 6.92 9.47 260.29 2.46 9.39 16 23 N -0.78 -0.04 9.06 -58.25 -0.53 -0.57 16 24 N -0.59 -6.74 6.17 -198.85 -1.23 -7.97 16 25 H 0.47 1.13 8.96 -92.71 -0.83 0.29 16 26 C 0.55 12.84 9.00 261.10 2.35 15.19 16 27 N -0.54 -14.42 7.75 -185.71 -1.44 -15.86 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.06 1.70 5.79 -2.39 -0.01 1.69 16 33 H 0.06 2.53 6.33 -2.38 -0.02 2.52 16 34 H 0.10 3.36 5.90 -2.38 -0.01 3.35 16 35 H 0.03 1.48 5.28 -2.38 -0.01 1.47 16 36 H -0.01 -0.60 8.04 -2.39 -0.02 -0.62 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.07 2.18 5.71 -2.39 -0.01 2.16 16 39 H 0.09 3.25 7.77 -2.39 -0.02 3.23 16 40 H 0.17 5.34 7.98 -2.91 -0.02 5.32 16 41 H 0.44 -3.36 8.95 -92.71 -0.83 -4.19 16 42 H 0.44 -0.71 8.95 -92.71 -0.83 -1.54 16 Total: -1.00 -87.61 348.34 -0.20 -87.81 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -1.37 Total: 0.25 kcal Atomic # 6 Polarization: 27.25 SS G_CDS: 9.53 Total: 36.77 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -9.15 Total: -129.51 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -1.23 Total: -42.74 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -87.61 -0.20 -87.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363773470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.852 kcal (2) G-P(sol) polarization free energy of solvation -87.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds