Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47465 * 65.00068 * 4 3 2 6 6 C 1.46500 * 119.99480 * 274.99915 * 5 4 3 7 7 C 1.50696 * 109.47196 * 85.00003 * 6 5 4 8 8 H 1.07998 * 120.00004 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00172 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00045 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00241 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47082 * 89.99779 * 11 9 7 13 13 H 1.48500 * 109.47056 * 210.00191 * 11 9 7 14 14 H 1.48498 * 109.46913 * 329.99749 * 11 9 7 15 15 S 1.65593 * 120.00131 * 94.99977 * 5 4 3 16 16 O 1.42104 * 106.40232 * 203.54255 * 15 5 4 17 17 O 1.42100 * 106.40241 * 336.45928 * 15 5 4 18 18 N 1.65593 * 107.21992 * 90.00130 * 15 5 4 19 19 C 1.46499 * 120.00405 * 65.00042 * 18 15 5 20 20 H 1.09005 * 112.84291 * 15.33091 * 19 18 15 21 21 C 1.53773 * 113.61837 * 146.52825 * 19 18 15 22 22 C 1.53774 * 87.08146 * 89.11642 * 21 19 18 23 23 H 1.08998 * 113.62044 * 270.80259 * 22 21 19 24 24 C 1.53002 * 113.61505 * 139.98023 * 22 21 19 25 25 O 1.42904 * 109.47162 * 175.00061 * 24 22 21 26 26 C 1.53779 * 113.61286 * 244.13821 * 19 18 15 27 27 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 30 30 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 31 31 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 32 32 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 33 33 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 34 34 H 1.09008 * 109.46750 * 204.99909 * 6 5 4 35 35 H 1.08998 * 109.47701 * 324.99811 * 6 5 4 36 36 H 0.96998 * 119.99990 * 180.02562 * 10 9 7 37 37 H 0.97007 * 119.99829 * 244.99931 * 18 15 5 38 38 H 1.09003 * 113.61957 * 203.66702 * 21 19 18 39 39 H 1.09000 * 113.61462 * 334.56915 * 21 19 18 40 40 H 1.08996 * 109.47379 * 295.00316 * 24 22 21 41 41 H 1.09000 * 109.47417 * 55.00367 * 24 22 21 42 42 H 0.96698 * 113.99803 * 180.02562 * 25 24 22 43 43 H 1.09000 * 113.61692 * 25.43003 * 26 19 18 44 44 H 1.09001 * 113.61439 * 156.33089 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0004 -0.8949 -1.3780 7 6 2.6349 -1.3876 -1.7825 8 1 1.8291 -0.6840 -1.9310 9 6 2.4142 -2.7366 -1.9631 10 7 3.3955 -3.5933 -1.7828 11 14 0.7217 -3.3472 -2.4652 12 1 0.6291 -3.3867 -3.9467 13 1 0.5054 -4.7111 -1.9192 14 1 -0.3150 -2.4292 -1.9287 15 16 4.4454 1.5130 -2.5262 16 8 4.2757 0.7257 -3.6970 17 8 3.8177 2.7742 -2.3401 18 7 6.0732 1.7732 -2.3695 19 6 7.0082 0.6505 -2.4769 20 1 6.5542 -0.2377 -2.9167 21 6 8.3571 1.0305 -3.1098 22 6 8.8400 1.3659 -1.6890 23 1 8.6466 2.3973 -1.3940 24 6 10.2799 0.9289 -1.4118 25 8 10.6749 1.3842 -0.1161 26 6 7.7832 0.3679 -1.1791 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9784 2.1766 0.0889 33 1 3.8514 0.5683 0.8410 34 1 4.7295 -1.1822 -2.1357 35 1 4.2774 -1.3372 -0.4211 36 1 3.2404 -4.5423 -1.9102 37 1 6.4077 2.6690 -2.2065 38 1 8.8806 0.1877 -3.5614 39 1 8.3017 1.8975 -3.7682 40 1 10.3433 -0.1585 -1.4498 41 1 10.9411 1.3579 -2.1647 42 1 11.5791 1.1426 0.1268 43 1 7.2647 0.7002 -0.2797 44 1 8.1499 -0.6558 -1.1036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364976880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = -141.648852 kcal Electronic energy + Delta-G solvation = -27386.480777 eV Core-core repulsion = 23467.147596 eV Total energy + Delta-G solvation = -3919.333181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.49165 -37.45766 -36.63889 -36.44981 -35.16814 -35.07432 -32.59877 -32.35762 -29.30786 -27.63940 -26.54803 -25.64457 -25.34205 -22.72707 -22.40050 -21.71864 -19.71341 -18.80418 -17.45329 -17.26663 -16.85740 -16.36143 -15.90814 -15.45646 -15.42451 -14.99326 -14.81546 -14.69170 -14.27900 -14.11442 -13.79952 -13.37462 -12.75757 -12.74501 -12.47485 -12.30535 -12.19060 -12.05218 -11.65437 -11.55762 -11.41364 -11.28856 -11.08301 -10.87168 -10.81815 -10.73300 -10.66135 -10.52536 -10.39984 -10.18400 -9.90603 -9.85859 -9.52473 -9.21474 -8.66527 -8.21689 -7.99078 -5.84825 -3.78968 1.23476 3.42063 3.48371 3.48811 3.53043 4.00951 4.14645 4.50730 4.52936 4.61990 4.62750 4.86858 4.93245 5.10811 5.26874 5.34598 5.38319 5.46945 5.54705 5.59402 5.68529 5.72384 5.72886 5.79156 5.91026 5.94738 6.03044 6.03744 6.13968 6.17868 6.34252 6.41008 6.49374 6.60277 7.17667 7.37248 7.45595 7.54560 7.72842 7.99495 8.16385 8.44790 9.21119 9.79891 11.25733 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.004507 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.468061 B = 6210.888065 C = 6848.653578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.332 6.332 3 C 0.041 3.959 4 C 0.140 3.860 5 N -0.986 5.986 6 C 0.261 3.739 7 C -0.482 4.482 8 H 0.071 0.929 9 C 0.055 3.945 10 N -0.908 5.908 11 Si 0.889 3.111 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.274 1.274 15 S 2.779 3.221 16 O -0.962 6.962 17 O -1.000 7.000 18 N -1.116 6.116 19 C 0.130 3.870 20 H 0.111 0.889 21 C -0.137 4.137 22 C -0.112 4.112 23 H 0.094 0.906 24 C 0.085 3.915 25 O -0.574 6.574 26 C -0.143 4.143 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.025 0.975 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.257 0.743 37 H 0.407 0.593 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.376 0.624 43 H 0.076 0.924 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.729 9.841 3.231 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.250 6.250 3 C -0.038 4.038 4 C 0.013 3.987 5 N -0.828 5.828 6 C 0.140 3.860 7 C -0.521 4.521 8 H 0.089 0.911 9 C -0.144 4.144 10 N -0.550 5.550 11 Si 0.718 3.282 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.199 1.199 15 S 2.787 3.213 16 O -0.945 6.945 17 O -0.984 6.984 18 N -0.872 5.872 19 C 0.021 3.979 20 H 0.129 0.871 21 C -0.176 4.176 22 C -0.130 4.130 23 H 0.113 0.887 24 C 0.007 3.993 25 O -0.379 6.379 26 C -0.182 4.182 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.239 0.761 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.222 0.778 43 H 0.095 0.905 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.626 9.849 2.468 13.991 hybrid contribution -0.206 -0.221 0.130 0.329 sum 9.420 9.629 2.598 13.718 Atomic orbital electron populations 1.22635 0.83688 1.02119 0.98168 1.88541 1.17149 1.24648 1.94643 1.22921 0.95096 0.86622 0.99203 1.21025 0.92533 0.97103 0.88000 1.57696 1.78291 1.19388 1.27452 1.19065 0.97954 0.71357 0.97645 1.21516 0.95940 0.91935 1.42728 0.91143 1.24826 0.96521 0.96805 0.96278 1.69916 1.31338 1.02146 1.51589 0.86663 0.85273 0.77707 0.78555 1.21087 1.21702 1.19869 1.02054 0.72483 0.72554 0.74233 1.93633 1.84518 1.70460 1.45869 1.93540 1.74061 1.43677 1.87162 1.56086 1.26222 1.15169 1.89727 1.21561 0.89923 0.89463 0.96937 0.87089 1.23308 0.96264 1.02380 0.95660 1.22619 0.92901 1.00649 0.96861 0.88748 1.22241 0.95391 0.97653 0.84012 1.86514 1.35262 1.81044 1.35038 1.23532 0.96685 0.99515 0.98486 0.95110 0.90170 0.95697 0.94072 0.93635 0.90588 0.90044 0.94958 0.94806 0.93296 0.76086 0.88803 0.90613 0.93287 0.93883 0.77808 0.90493 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.90 101.05 1.10 1.66 16 2 O -0.33 -6.97 6.62 -35.23 -0.23 -7.20 16 3 C 0.04 0.73 6.22 37.16 0.23 0.96 16 4 C 0.14 2.41 5.81 -4.04 -0.02 2.39 16 5 N -0.99 -19.82 2.86 -115.66 -0.33 -20.15 16 6 C 0.26 6.36 5.04 -5.20 -0.03 6.33 16 7 C -0.48 -13.20 7.22 -34.44 -0.25 -13.45 16 8 H 0.07 1.96 6.09 -52.49 -0.32 1.64 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.91 -26.59 13.29 55.43 0.74 -25.86 16 11 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 12 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 14 H -0.27 -6.51 7.05 56.52 0.40 -6.11 16 15 S 2.78 53.73 6.02 -107.50 -0.65 53.08 16 16 O -0.96 -22.68 16.62 -57.17 -0.95 -23.63 16 17 O -1.00 -20.19 17.11 -57.17 -0.98 -21.17 16 18 N -1.12 -16.15 5.79 -4.20 -0.02 -16.17 16 19 C 0.13 1.79 4.52 -67.12 -0.30 1.49 16 20 H 0.11 1.79 7.00 -51.93 -0.36 1.42 16 21 C -0.14 -1.46 7.42 -25.93 -0.19 -1.65 16 22 C -0.11 -1.18 3.84 -89.67 -0.34 -1.53 16 23 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 24 C 0.08 0.77 6.89 37.16 0.26 1.03 16 25 O -0.57 -5.70 13.66 -35.23 -0.48 -6.18 16 26 C -0.14 -1.77 7.45 -25.78 -0.19 -1.97 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.08 7.61 -51.93 -0.40 0.69 16 33 H 0.08 1.33 8.00 -51.93 -0.42 0.92 16 34 H 0.03 0.83 6.85 -51.92 -0.36 0.47 16 35 H 0.03 0.86 8.00 -51.93 -0.42 0.44 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.41 4.84 8.81 -34.47 -0.30 4.53 16 38 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.42 7.85 -51.93 -0.41 0.01 16 41 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 1.98 9.12 45.56 0.42 2.39 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -35.26 370.38 -8.52 -43.78 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.33 Total: 4.08 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 0.16 Total: -3.28 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.38 Total: -62.18 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -2.64 Total: -58.19 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 53.73 SS G_CDS: -0.65 Total: 53.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.26 -8.52 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364976880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.870 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds