Wall clock time and date at job start Fri Apr 10 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35238 * 107.85507 * 179.89559 * 11 10 9 13 13 C 1.40405 * 107.87064 * 0.36692 * 12 11 10 14 14 N 1.40196 * 125.97001 * 179.74102 * 13 12 11 15 15 C 1.34768 * 120.00423 * 0.02562 * 14 13 12 16 16 O 1.21591 * 120.00079 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00283 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99982 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.46819 * 179.97438 * 18 17 15 20 20 N 1.46506 * 109.47328 * 180.02562 * 19 18 17 21 21 C 1.47049 * 125.40780 * 269.72409 * 20 19 18 22 22 C 1.54111 * 103.86358 * 179.86422 * 21 20 19 23 23 N 1.47056 * 103.85554 * 0.37220 * 22 21 20 24 24 C 1.33946 * 109.18555 * 359.75752 * 23 22 21 25 25 O 1.21586 * 123.04654 * 180.02562 * 24 23 22 26 26 N 1.31207 * 108.05174 * 359.77109 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.07999 * 126.06995 * 0.02562 * 11 10 9 31 31 H 1.08004 * 126.06640 * 180.13892 * 12 11 10 32 32 H 0.97000 * 119.99746 * 180.02562 * 14 13 12 33 33 H 0.96994 * 120.00039 * 0.02562 * 17 15 14 34 34 H 1.08997 * 109.47335 * 299.99969 * 18 17 15 35 35 H 1.09001 * 109.46861 * 60.00214 * 18 17 15 36 36 H 1.09000 * 109.47148 * 299.99675 * 19 18 17 37 37 H 1.09001 * 109.47403 * 60.00103 * 19 18 17 38 38 H 1.09000 * 110.54833 * 298.58770 * 21 20 19 39 39 H 1.09002 * 110.55374 * 61.40175 * 21 20 19 40 40 H 1.08997 * 110.75577 * 241.67902 * 22 21 20 41 41 H 1.09000 * 110.46230 * 118.92382 * 22 21 20 42 42 H 0.97005 * 125.40578 * 179.74718 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2635 -5.4432 0.5308 13 6 3.8673 -4.9126 -0.6204 14 7 4.9616 -5.4614 -1.3036 15 6 5.5284 -6.6018 -0.8627 16 8 5.0903 -7.1552 0.1274 17 7 6.5808 -7.1291 -1.5193 18 6 7.1965 -8.3691 -1.0403 19 6 8.3609 -8.7477 -1.9576 20 7 8.9763 -9.9881 -1.4791 21 6 10.0861 -10.0731 -0.5181 22 6 10.3309 -11.5874 -0.3696 23 7 9.3390 -12.1944 -1.2698 24 6 8.6212 -11.2248 -1.8518 25 8 7.7278 -11.4469 -2.6460 26 7 3.2287 -3.8133 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5908 -4.7508 1.7301 31 1 3.5593 -6.3454 1.0457 32 1 5.3109 -5.0201 -2.0937 33 1 6.9305 -6.6875 -2.3089 34 1 7.5657 -8.2230 -0.0253 35 1 6.4553 -9.1684 -1.0458 36 1 7.9913 -8.8940 -2.9725 37 1 9.1022 -7.9485 -1.9526 38 1 10.9728 -9.5771 -0.9128 39 1 9.7976 -9.6386 0.4391 40 1 10.1608 -11.9072 0.6585 41 1 11.3421 -11.8428 -0.6864 42 1 9.2232 -13.1459 -1.4186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365767537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:45 Heat of formation + Delta-G solvation = 48.922567 kcal Electronic energy + Delta-G solvation = -25722.827801 eV Core-core repulsion = 21740.899968 eV Total energy + Delta-G solvation = -3981.927833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43541 -40.75395 -39.59938 -36.76315 -36.16203 -34.75002 -34.02190 -33.56250 -30.94321 -29.86311 -29.33313 -28.64708 -26.20111 -24.23193 -23.46649 -22.98770 -21.69041 -20.90165 -20.46692 -19.82051 -18.26545 -17.89932 -17.24052 -17.15443 -16.67004 -16.57278 -15.83673 -15.65259 -14.85025 -14.75815 -14.51075 -14.48853 -14.18230 -14.07876 -13.82167 -13.74875 -13.28840 -13.11280 -12.82495 -12.41823 -12.33992 -12.24772 -11.85853 -11.75791 -11.14317 -10.80372 -10.61525 -10.43807 -10.15638 -10.13802 -9.77784 -9.72463 -9.32616 -9.13720 -8.96521 -8.56561 -8.15599 -7.45114 -6.56273 -4.30176 1.88452 2.46488 2.61364 2.73750 3.06849 3.36882 3.38484 3.40234 3.57675 3.61940 3.79981 3.84046 4.26745 4.28542 4.29619 4.42667 4.53123 4.76181 4.84720 4.95708 5.13040 5.17285 5.17674 5.42921 5.56350 5.64024 5.73744 6.06980 6.17953 6.26975 6.44583 6.49191 6.62103 6.67113 6.79401 6.96934 7.00729 7.44183 7.64961 7.87273 7.90759 8.15412 8.36548 8.55234 8.58257 8.65654 9.38018 10.81153 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.001858 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.727262 B =15063.870165 C =15418.173186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.022 3.978 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.319 5.319 11 C 0.050 3.950 12 C -0.284 4.284 13 C 0.278 3.722 14 N -0.643 5.643 15 C 0.715 3.285 16 O -0.566 6.566 17 N -0.742 5.742 18 C 0.123 3.877 19 C 0.142 3.858 20 N -0.630 5.630 21 C 0.090 3.910 22 C 0.092 3.908 23 N -0.742 5.742 24 C 0.699 3.301 25 O -0.581 6.581 26 N -0.305 5.305 27 H 0.267 0.733 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.407 0.593 33 H 0.398 0.602 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.696 -21.459 -1.050 31.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.183 4.183 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.645 4.645 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.101 5.101 11 C -0.099 4.099 12 C -0.315 4.315 13 C 0.023 3.977 14 N -0.293 5.293 15 C 0.414 3.586 16 O -0.441 6.441 17 N -0.400 5.400 18 C -0.003 4.003 19 C 0.019 3.981 20 N -0.369 5.369 21 C -0.033 4.033 22 C -0.033 4.033 23 N -0.405 5.405 24 C 0.399 3.601 25 O -0.458 6.458 26 N -0.136 5.136 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.242 0.758 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 22.414 -19.237 -1.401 29.570 hybrid contribution 0.657 -2.293 -0.100 2.388 sum 23.071 -21.530 -1.501 31.592 Atomic orbital electron populations 1.70848 1.06769 1.30434 1.46003 1.25925 0.96333 1.02806 0.93197 0.83414 0.74791 0.74572 0.76799 1.20548 1.21265 1.21164 1.22105 0.95372 0.90457 1.56594 0.91858 1.19748 0.86330 0.82839 0.97961 1.48753 1.23452 1.19586 1.18290 1.22551 1.00469 0.90197 0.96724 1.21526 1.02085 1.06301 1.01602 1.18775 0.90712 0.93934 0.94236 1.41345 1.31558 1.25026 1.31335 1.15541 0.79934 0.80133 0.82948 1.90876 1.64354 1.62167 1.26688 1.44766 1.34311 1.27903 1.32991 1.21549 0.95016 0.85684 0.98016 1.21286 0.94573 0.83865 0.98395 1.46902 1.37300 1.05150 1.47555 1.22456 0.90511 0.96146 0.94230 1.22353 0.93638 0.91761 0.95548 1.45097 1.38520 1.08705 1.48151 1.15915 0.81769 0.81465 0.80983 1.91004 1.33029 1.83602 1.38117 1.77338 1.03749 1.16298 1.16191 0.92270 0.93635 0.94796 0.81543 0.82063 0.75777 0.76826 0.91198 0.90866 0.88879 0.89256 0.89713 0.89629 0.89765 0.89904 0.72814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.51 13.65 55.43 0.76 -25.75 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.08 25.00 29.90 -169.99 -5.08 19.91 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.61 -17.21 9.24 -34.44 -0.32 -17.52 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 6.40 5.57 -5.19 -0.03 6.37 16 10 N -0.32 -7.60 3.67 -62.56 -0.23 -7.83 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.28 -5.82 9.61 -39.83 -0.38 -6.20 16 13 C 0.28 5.72 8.11 -154.36 -1.25 4.46 16 14 N -0.64 -10.09 5.45 -15.51 -0.08 -10.18 16 15 C 0.72 10.66 8.53 -86.92 -0.74 9.91 16 16 O -0.57 -10.49 13.47 5.29 0.07 -10.42 16 17 N -0.74 -7.25 5.56 -65.23 -0.36 -7.62 16 18 C 0.12 1.12 6.00 -4.04 -0.02 1.10 16 19 C 0.14 0.90 6.11 -4.04 -0.02 0.87 16 20 N -0.63 -4.35 2.96 -178.81 -0.53 -4.88 16 21 C 0.09 0.28 7.68 -3.16 -0.02 0.25 16 22 C 0.09 0.21 8.06 -3.16 -0.03 0.19 16 23 N -0.74 -4.32 6.37 -64.70 -0.41 -4.73 16 24 C 0.70 6.82 8.60 -88.40 -0.76 6.06 16 25 O -0.58 -8.45 17.53 5.29 0.09 -8.35 16 26 N -0.30 -7.17 12.42 31.44 0.39 -6.78 16 27 H 0.27 7.66 7.22 -40.82 -0.29 7.37 16 28 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 29 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 30 H 0.17 2.80 8.06 -52.49 -0.42 2.37 16 31 H 0.16 3.25 5.91 -52.48 -0.31 2.94 16 32 H 0.41 5.08 8.84 -40.82 -0.36 4.71 16 33 H 0.40 2.52 8.49 -40.82 -0.35 2.17 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.67 7.91 -51.93 -0.41 0.26 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 42 H 0.43 1.90 8.96 -40.82 -0.37 1.53 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -39.65 362.86 -9.30 -48.95 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.50 Total: 5.36 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.88 Total: 6.85 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.47 Total: -67.77 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.16 Total: -18.77 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.65 -9.30 -48.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.872 kcal (2) G-P(sol) polarization free energy of solvation -39.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds