Wall clock time and date at job start Fri Apr 10 2020 18:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46506 * 120.00014 * 2 1 4 4 C 1.38023 * 120.00049 * 180.02562 * 2 1 3 5 5 N 1.32861 * 120.01016 * 180.02562 * 4 2 1 6 6 C 1.32828 * 119.96946 * 179.97438 * 5 4 2 7 7 N 1.38018 * 120.00959 * 180.02562 * 6 5 4 8 8 N 1.33052 * 119.98079 * 359.74058 * 6 5 4 9 9 C 1.32693 * 120.01657 * 0.51169 * 8 6 5 10 10 C 1.48833 * 119.98509 * 179.76791 * 9 8 6 11 11 O 1.21429 * 120.00459 * 179.72114 * 10 9 8 12 12 N 1.34778 * 119.99737 * 359.71950 * 10 9 8 13 13 C 1.47422 * 125.65119 * 359.97438 * 12 10 9 14 14 C 1.54909 * 104.83564 * 155.90415 * 13 12 10 15 15 C 1.55152 * 101.58032 * 37.00513 * 14 13 12 16 16 O 1.42903 * 110.72100 * 82.86680 * 15 14 13 17 17 C 1.50703 * 110.71825 * 205.95483 * 15 14 13 18 18 H 1.07993 * 120.00249 * 357.56786 * 17 15 14 19 19 C 1.37877 * 119.99923 * 177.55974 * 17 15 14 20 20 N 1.31521 * 120.00053 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00236 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46913 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47079 * 119.99981 * 21 19 17 24 24 H 1.48501 * 109.46992 * 240.00088 * 21 19 17 25 25 C 1.47027 * 125.65015 * 180.02562 * 12 10 9 26 26 N 1.32724 * 120.03333 * 359.49043 * 9 8 6 27 27 H 1.08999 * 109.47094 * 269.99628 * 1 2 3 28 28 H 1.09001 * 109.47504 * 29.99421 * 1 2 3 29 29 H 1.09003 * 109.47554 * 149.99969 * 1 2 3 30 30 H 1.08994 * 109.46923 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47067 * 300.00375 * 3 2 1 32 32 H 1.09002 * 109.46757 * 60.00376 * 3 2 1 33 33 H 0.97002 * 120.00248 * 0.02562 * 7 6 5 34 34 H 0.97003 * 120.00514 * 179.97438 * 7 6 5 35 35 H 1.09002 * 110.36847 * 37.05670 * 13 12 10 36 36 H 1.09001 * 110.36336 * 274.74112 * 13 12 10 37 37 H 1.09005 * 111.00113 * 278.93173 * 14 13 12 38 38 H 1.08998 * 111.03822 * 155.09465 * 14 13 12 39 39 H 0.96700 * 114.00311 * 179.97438 * 16 15 14 40 40 H 0.97000 * 119.99959 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.87825 * 61.60851 * 25 12 10 42 42 H 1.09001 * 109.88209 * 300.44906 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1551 -1.1953 -0.0005 5 7 3.4837 -1.1955 0.0000 6 6 4.1470 -2.3463 0.0000 7 7 5.5272 -2.3475 0.0010 8 7 3.4806 -3.4979 0.0047 9 6 2.1536 -3.4969 -0.0009 10 6 1.4089 -4.7855 -0.0008 11 8 0.1946 -4.7851 -0.0008 12 7 2.0823 -5.9530 -0.0009 13 6 3.5493 -6.0988 -0.0015 14 6 3.8091 -7.4982 0.6101 15 6 2.6284 -8.3176 0.0255 16 8 2.9325 -8.7708 -1.2952 17 6 2.2917 -9.4813 0.9219 18 1 2.8779 -9.6664 1.8098 19 6 1.2350 -10.3097 0.6085 20 7 0.5212 -10.0846 -0.4731 21 14 0.8170 -11.7517 1.7199 22 1 1.7648 -11.7869 2.8625 23 1 -0.5689 -11.5979 2.2303 24 1 0.9234 -13.0171 0.9500 25 6 1.4755 -7.2922 -0.0014 26 7 1.4902 -2.3474 -0.0009 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 3.2691 1.0696 -0.0005 31 1 1.9341 1.8404 -0.8900 32 1 1.9342 1.8403 0.8901 33 1 6.0130 -1.5079 0.0022 34 1 6.0115 -3.1880 0.0014 35 1 4.0077 -5.3247 0.6139 36 1 3.9346 -6.0525 -1.0200 37 1 3.7599 -7.4641 1.6985 38 1 4.7661 -7.8994 0.2767 39 1 2.2265 -9.2887 -1.7057 40 1 -0.2219 -10.6676 -0.6937 41 1 0.8789 -7.4285 -0.9034 42 1 0.8491 -7.4157 0.8821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413182333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:49 Heat of formation + Delta-G solvation = 23.956229 kcal Electronic energy + Delta-G solvation = -27737.842220 eV Core-core repulsion = 23754.831765 eV Total energy + Delta-G solvation = -3983.010455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57867 -39.22520 -37.48109 -37.20226 -35.35428 -34.34673 -33.03207 -32.16676 -31.66998 -30.03650 -28.42053 -27.82692 -26.60606 -25.91086 -24.22512 -22.69362 -22.14159 -19.86036 -19.51550 -19.03916 -17.76563 -17.15447 -16.40861 -16.32274 -16.23764 -15.79687 -15.35391 -15.02426 -14.69693 -14.63124 -14.45620 -14.19952 -14.07760 -13.03076 -12.91998 -12.83115 -12.75560 -12.49207 -12.25322 -12.11809 -11.97026 -11.62598 -11.48361 -11.06573 -11.04708 -10.77199 -10.53188 -10.46170 -10.16799 -9.96328 -9.47885 -9.28037 -9.11314 -9.08974 -8.64028 -8.43174 -8.29475 -7.85240 -6.27021 -4.35611 0.74840 1.35230 2.27117 2.97054 3.14476 3.16728 3.22880 3.31058 3.34457 4.06026 4.14484 4.28742 4.44410 4.71971 4.97635 5.01960 5.09507 5.12699 5.43310 5.48750 5.60162 5.63882 5.84396 5.90835 5.99487 6.15995 6.21698 6.37031 6.44990 6.61020 6.70611 6.82509 6.91723 6.96212 7.03308 7.12048 7.28975 7.39467 7.48776 7.75476 8.01719 8.13320 8.41370 8.65182 8.69753 9.33073 9.43541 10.80576 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022740 B = 0.003237 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.019975 B = 8648.613686 C = 9461.382267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.580 5.580 3 C 0.095 3.905 4 C 0.624 3.376 5 N -0.651 5.651 6 C 0.626 3.374 7 N -0.806 5.806 8 N -0.607 5.607 9 C 0.417 3.583 10 C 0.582 3.418 11 O -0.513 6.513 12 N -0.581 5.581 13 C 0.105 3.895 14 C -0.122 4.122 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.536 4.536 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.895 5.895 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.103 3.897 26 N -0.589 5.589 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.415 0.585 34 H 0.420 0.580 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.384 0.616 40 H 0.270 0.730 41 H 0.069 0.931 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.422 19.503 0.488 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.297 5.297 3 C -0.048 4.048 4 C 0.260 3.740 5 N -0.392 5.392 6 C 0.259 3.741 7 N -0.356 5.356 8 N -0.345 5.345 9 C 0.135 3.865 10 C 0.364 3.636 11 O -0.387 6.387 12 N -0.313 5.313 13 C -0.017 4.017 14 C -0.160 4.160 15 C 0.207 3.793 16 O -0.394 6.394 17 C -0.574 4.574 18 H 0.086 0.914 19 C -0.134 4.134 20 N -0.534 5.534 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.018 4.018 26 N -0.323 5.323 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.246 0.754 34 H 0.252 0.748 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.967 19.990 0.503 21.176 hybrid contribution -0.433 -0.871 0.404 1.053 sum 6.535 19.119 0.906 20.225 Atomic orbital electron populations 1.21735 0.76751 1.03689 1.02308 1.45874 1.06298 1.01692 1.75857 1.21747 0.98867 0.83081 1.01099 1.18902 0.84162 0.86515 0.84430 1.67762 1.08346 1.30011 1.33044 1.19100 0.87494 0.83985 0.83555 1.41663 1.00593 1.12855 1.80457 1.68942 1.09433 1.27884 1.28209 1.22970 0.85455 0.93059 0.84998 1.16842 0.85882 0.80782 0.80093 1.90774 1.12205 1.85727 1.49979 1.48591 1.09045 1.05700 1.68011 1.22645 0.79646 0.98143 1.01303 1.22830 0.99831 0.93571 0.99766 1.19501 0.87857 0.89950 0.81953 1.86095 1.47709 1.74451 1.31138 1.21566 1.14763 1.11374 1.09712 0.91397 1.25092 0.95176 0.97792 0.95311 1.69651 1.19946 1.38840 1.24963 0.86346 0.78328 0.81703 0.80516 1.19600 1.20771 1.20779 1.23173 0.98488 0.77906 1.02239 1.68439 1.40252 0.97093 1.26532 0.92542 0.91084 0.89343 0.88835 0.92230 0.92254 0.75401 0.74788 0.88935 0.91854 0.90712 0.90574 0.76488 0.91988 0.91255 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.98 10.50 59.84 0.63 1.60 16 2 N -0.58 -6.81 3.36 -191.76 -0.64 -7.45 16 3 C 0.10 0.76 10.71 59.85 0.64 1.40 16 4 C 0.62 9.49 8.19 -322.20 -2.64 6.85 16 5 N -0.65 -9.03 9.01 -14.78 -0.13 -9.17 16 6 C 0.63 8.51 8.76 -322.21 -2.82 5.69 16 7 N -0.81 -6.90 9.05 29.84 0.27 -6.63 16 8 N -0.61 -9.83 6.83 -11.88 -0.08 -9.91 16 9 C 0.42 7.90 7.62 -156.50 -1.19 6.71 16 10 C 0.58 12.72 7.89 -11.87 -0.09 12.63 16 11 O -0.51 -12.64 17.23 5.43 0.09 -12.55 16 12 N -0.58 -12.54 3.33 -171.26 -0.57 -13.11 16 13 C 0.11 1.96 5.95 -2.53 -0.02 1.94 16 14 C -0.12 -2.44 6.22 -24.59 -0.15 -2.60 16 15 C 0.25 5.98 0.86 -89.94 -0.08 5.91 16 16 O -0.58 -14.68 13.09 -35.23 -0.46 -15.14 16 17 C -0.54 -13.90 8.12 -34.44 -0.28 -14.18 16 18 H 0.07 1.74 7.77 -52.49 -0.41 1.33 16 19 C 0.07 1.80 5.26 -17.82 -0.09 1.70 16 20 N -0.89 -23.70 10.97 55.43 0.61 -23.09 16 21 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.10 2.51 5.39 -3.07 -0.02 2.49 16 26 N -0.59 -10.64 9.00 -11.88 -0.11 -10.75 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 29 H 0.09 1.09 7.36 -51.93 -0.38 0.71 16 30 H 0.09 0.81 6.80 -51.93 -0.35 0.45 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.41 2.51 8.95 -40.82 -0.37 2.15 16 34 H 0.42 2.96 8.95 -40.82 -0.37 2.60 16 35 H 0.09 1.54 5.89 -51.93 -0.31 1.24 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.38 9.92 7.17 45.56 0.33 10.24 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.07 1.83 8.01 -51.93 -0.42 1.41 16 42 H 0.07 1.85 7.82 -51.93 -0.41 1.44 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -31.99 352.06 -11.61 -43.61 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -4.76 Total: 13.38 kcal Atomic # 6 Polarization: 36.26 SS G_CDS: -6.11 Total: 30.14 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -0.66 Total: -80.11 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.37 Total: -27.69 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.99 -11.61 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413182333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.562 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds