Wall clock time and date at job start Fri Apr 10 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46506 * 120.00014 * 2 1 4 4 C 1.38023 * 120.00049 * 180.02562 * 2 1 3 5 5 N 1.32861 * 120.01016 * 180.02562 * 4 2 1 6 6 C 1.32828 * 119.96946 * 179.97438 * 5 4 2 7 7 N 1.38018 * 120.00959 * 180.02562 * 6 5 4 8 8 N 1.33052 * 119.98079 * 359.74058 * 6 5 4 9 9 C 1.32693 * 120.01657 * 0.51169 * 8 6 5 10 10 C 1.48833 * 119.98509 * 179.76791 * 9 8 6 11 11 O 1.21429 * 120.00459 * 179.72114 * 10 9 8 12 12 N 1.34778 * 119.99737 * 359.71950 * 10 9 8 13 13 C 1.47422 * 125.65119 * 359.97438 * 12 10 9 14 14 C 1.54909 * 104.83564 * 155.90415 * 13 12 10 15 15 C 1.55152 * 101.58032 * 37.00513 * 14 13 12 16 16 O 1.42903 * 110.72100 * 82.86680 * 15 14 13 17 17 C 1.50703 * 110.71825 * 205.95483 * 15 14 13 18 18 H 1.07993 * 120.00249 * 357.56786 * 17 15 14 19 19 C 1.37877 * 119.99923 * 177.55974 * 17 15 14 20 20 N 1.31521 * 120.00053 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00236 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46913 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47079 * 119.99981 * 21 19 17 24 24 H 1.48501 * 109.46992 * 240.00088 * 21 19 17 25 25 C 1.47027 * 125.65015 * 180.02562 * 12 10 9 26 26 N 1.32724 * 120.03333 * 359.49043 * 9 8 6 27 27 H 1.08999 * 109.47094 * 269.99628 * 1 2 3 28 28 H 1.09001 * 109.47504 * 29.99421 * 1 2 3 29 29 H 1.09003 * 109.47554 * 149.99969 * 1 2 3 30 30 H 1.08994 * 109.46923 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47067 * 300.00375 * 3 2 1 32 32 H 1.09002 * 109.46757 * 60.00376 * 3 2 1 33 33 H 0.97002 * 120.00248 * 0.02562 * 7 6 5 34 34 H 0.97003 * 120.00514 * 179.97438 * 7 6 5 35 35 H 1.09002 * 110.36847 * 37.05670 * 13 12 10 36 36 H 1.09001 * 110.36336 * 274.74112 * 13 12 10 37 37 H 1.09005 * 111.00113 * 278.93173 * 14 13 12 38 38 H 1.08998 * 111.03822 * 155.09465 * 14 13 12 39 39 H 0.96700 * 114.00311 * 179.97438 * 16 15 14 40 40 H 0.97000 * 119.99959 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.87825 * 61.60851 * 25 12 10 42 42 H 1.09001 * 109.88209 * 300.44906 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1551 -1.1953 -0.0005 5 7 3.4837 -1.1955 0.0000 6 6 4.1470 -2.3463 0.0000 7 7 5.5272 -2.3475 0.0010 8 7 3.4806 -3.4979 0.0047 9 6 2.1536 -3.4969 -0.0009 10 6 1.4089 -4.7855 -0.0008 11 8 0.1946 -4.7851 -0.0008 12 7 2.0823 -5.9530 -0.0009 13 6 3.5493 -6.0988 -0.0015 14 6 3.8091 -7.4982 0.6101 15 6 2.6284 -8.3176 0.0255 16 8 2.9325 -8.7708 -1.2952 17 6 2.2917 -9.4813 0.9219 18 1 2.8779 -9.6664 1.8098 19 6 1.2350 -10.3097 0.6085 20 7 0.5212 -10.0846 -0.4731 21 14 0.8170 -11.7517 1.7199 22 1 1.7648 -11.7869 2.8625 23 1 -0.5689 -11.5979 2.2303 24 1 0.9234 -13.0171 0.9500 25 6 1.4755 -7.2922 -0.0014 26 7 1.4902 -2.3474 -0.0009 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 3.2691 1.0696 -0.0005 31 1 1.9341 1.8404 -0.8900 32 1 1.9342 1.8403 0.8901 33 1 6.0130 -1.5079 0.0022 34 1 6.0115 -3.1880 0.0014 35 1 4.0077 -5.3247 0.6139 36 1 3.9346 -6.0525 -1.0200 37 1 3.7599 -7.4641 1.6985 38 1 4.7661 -7.8994 0.2767 39 1 2.2265 -9.2887 -1.7057 40 1 -0.2219 -10.6676 -0.6937 41 1 0.8789 -7.4285 -0.9034 42 1 0.8491 -7.4157 0.8821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413182333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:48 Heat of formation + Delta-G solvation = 3.159443 kcal Electronic energy + Delta-G solvation = -27738.744036 eV Core-core repulsion = 23754.831765 eV Total energy + Delta-G solvation = -3983.912271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.75958 -40.91591 -39.00910 -38.42065 -36.42458 -36.17493 -34.17702 -34.15395 -32.73713 -31.76804 -29.68403 -29.14979 -27.93284 -27.27949 -25.79618 -24.11513 -23.31110 -21.49383 -21.08994 -20.24546 -19.12551 -18.97663 -17.80427 -17.53035 -17.36289 -17.08278 -16.78668 -16.51050 -16.34321 -16.02461 -15.49753 -15.44771 -15.36620 -14.79796 -14.73517 -14.64236 -13.84798 -13.46995 -13.40695 -13.33900 -13.20334 -13.08623 -12.94392 -12.86392 -12.51219 -12.31539 -12.27690 -12.22264 -12.01276 -11.60953 -11.18053 -10.70606 -10.63598 -10.39981 -10.27472 -10.02354 -9.63828 -9.35413 -8.24702 -6.40544 -0.58504 0.25160 1.22792 1.42667 1.45995 1.56606 1.60462 1.71951 2.00863 2.39656 2.77045 2.87703 3.01935 3.27861 3.55567 3.87762 4.14032 4.15450 4.25025 4.40423 4.48903 4.50958 4.63918 4.70076 4.74418 4.89275 4.92993 4.99959 5.04406 5.18520 5.24845 5.28205 5.35639 5.40956 5.51989 5.76822 5.85956 5.99645 6.05815 6.14302 6.42776 6.64711 6.68724 6.89113 7.30993 7.39027 7.39754 8.81589 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022740 B = 0.003237 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.019975 B = 8648.613686 C = 9461.382267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.575 5.575 3 C 0.091 3.909 4 C 0.608 3.392 5 N -0.640 5.640 6 C 0.617 3.383 7 N -0.775 5.775 8 N -0.610 5.610 9 C 0.406 3.594 10 C 0.579 3.421 11 O -0.554 6.554 12 N -0.584 5.584 13 C 0.116 3.884 14 C -0.114 4.114 15 C 0.235 3.765 16 O -0.587 6.587 17 C -0.554 4.554 18 H 0.070 0.930 19 C 0.025 3.975 20 N -0.917 5.917 21 Si 0.964 3.036 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.278 1.278 25 C 0.119 3.881 26 N -0.615 5.615 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.430 0.570 34 H 0.430 0.570 35 H 0.119 0.881 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.377 0.623 40 H 0.271 0.729 41 H 0.038 0.962 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.537 21.471 1.176 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.291 5.291 3 C -0.050 4.050 4 C 0.244 3.756 5 N -0.382 5.382 6 C 0.249 3.751 7 N -0.327 5.327 8 N -0.350 5.350 9 C 0.123 3.877 10 C 0.363 3.637 11 O -0.431 6.431 12 N -0.316 5.316 13 C -0.006 4.006 14 C -0.152 4.152 15 C 0.194 3.806 16 O -0.395 6.395 17 C -0.592 4.592 18 H 0.088 0.912 19 C -0.176 4.176 20 N -0.556 5.556 21 Si 0.790 3.210 22 H -0.188 1.188 23 H -0.211 1.211 24 H -0.203 1.203 25 C -0.004 4.004 26 N -0.351 5.351 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.264 0.736 34 H 0.265 0.735 35 H 0.136 0.864 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.227 0.773 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.179 22.034 1.193 23.899 hybrid contribution -1.069 -1.342 0.168 1.724 sum 8.110 20.692 1.361 22.267 Atomic orbital electron populations 1.21835 0.76023 1.04081 1.02700 1.46314 1.07051 1.01692 1.74035 1.22003 0.98227 0.81571 1.03207 1.19279 0.84839 0.86774 0.84673 1.67923 1.07559 1.29544 1.33172 1.19439 0.88951 0.83300 0.83386 1.41647 0.98547 1.14419 1.78045 1.68769 1.08103 1.29249 1.28856 1.22121 0.86394 0.91902 0.87265 1.17321 0.85707 0.81865 0.78848 1.90728 1.14117 1.86653 1.51559 1.48610 1.10227 1.04765 1.67968 1.22737 0.77770 0.98083 1.01961 1.22836 0.98863 0.93355 1.00128 1.19708 0.89570 0.89860 0.81456 1.86085 1.47374 1.74347 1.31713 1.21866 1.15073 1.12164 1.10133 0.91226 1.25829 0.95111 1.00129 0.96510 1.69754 1.20164 1.39577 1.26116 0.85405 0.77794 0.78822 0.79004 1.18840 1.21075 1.20333 1.22747 0.98261 0.80060 0.99291 1.68332 1.41283 0.97778 1.27755 0.92152 0.87377 0.92204 0.89383 0.89984 0.90156 0.73559 0.73533 0.86353 0.91455 0.89899 0.88817 0.77291 0.91994 0.94379 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.50 127.77 1.34 3.13 16 2 N -0.57 -12.42 3.36 -760.61 -2.56 -14.98 16 3 C 0.09 1.16 10.71 127.77 1.37 2.53 16 4 C 0.61 17.85 8.19 261.28 2.14 19.99 16 5 N -0.64 -16.48 9.01 -200.67 -1.81 -18.28 16 6 C 0.62 15.40 8.76 261.28 2.29 17.69 16 7 N -0.77 -10.73 9.05 -59.50 -0.54 -11.27 16 8 N -0.61 -18.98 6.83 -191.51 -1.31 -20.29 16 9 C 0.41 15.48 7.62 137.62 1.05 16.53 16 10 C 0.58 26.17 7.89 87.08 0.69 26.86 16 11 O -0.55 -28.81 17.23 -3.49 -0.06 -28.87 16 12 N -0.58 -25.79 3.33 -814.08 -2.71 -28.50 16 13 C 0.12 4.19 5.95 86.86 0.52 4.71 16 14 C -0.11 -4.44 6.22 31.98 0.20 -4.24 16 15 C 0.23 11.47 0.86 -10.36 -0.01 11.46 16 16 O -0.59 -29.91 13.09 -148.98 -1.95 -31.86 16 17 C -0.55 -29.00 8.12 25.60 0.21 -28.79 16 18 H 0.07 3.54 7.77 -2.91 -0.02 3.51 16 19 C 0.02 1.31 5.26 84.65 0.45 1.75 16 20 N -0.92 -49.92 10.97 21.45 0.24 -49.68 16 21 Si 0.96 42.08 29.54 68.60 2.03 44.10 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 C 0.12 6.05 5.39 86.72 0.47 6.52 16 26 N -0.61 -22.41 9.00 -191.50 -1.72 -24.13 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.11 1.19 8.07 -2.39 -0.02 1.17 16 29 H 0.06 1.49 7.36 -2.39 -0.02 1.47 16 30 H 0.09 1.26 6.80 -2.39 -0.02 1.24 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.43 3.62 8.95 -92.71 -0.83 2.79 16 34 H 0.43 4.52 8.95 -92.71 -0.83 3.69 16 35 H 0.12 3.70 5.89 -2.39 -0.01 3.68 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.08 3.08 8.04 -2.38 -0.02 3.06 16 38 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.38 20.12 7.17 -74.06 -0.53 19.59 16 40 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 41 H 0.04 2.13 8.01 -2.39 -0.02 2.11 16 42 H 0.04 2.36 7.82 -2.39 -0.02 2.34 16 Total: -1.00 -72.05 352.06 -0.77 -72.83 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -1.08 Total: 32.80 kcal Atomic # 6 Polarization: 67.43 SS G_CDS: 10.70 Total: 78.13 kcal Atomic # 7 Polarization: -156.72 SS G_CDS: -10.41 Total: -167.13 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -2.01 Total: -60.73 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -72.05 -0.77 -72.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413182333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.987 kcal (2) G-P(sol) polarization free energy of solvation -72.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds