Wall clock time and date at job start Fri Apr 10 2020 18:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99866 * 2 1 4 4 C 1.53003 * 109.46937 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47387 * 64.99926 * 4 3 2 6 6 C 1.46501 * 119.99995 * 274.99962 * 5 4 3 7 7 C 1.50700 * 109.47235 * 275.00090 * 6 5 4 8 8 H 1.07993 * 119.99864 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99968 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99886 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99871 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47070 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47128 * 120.00066 * 11 9 7 14 14 H 1.48504 * 109.47053 * 240.00040 * 11 9 7 15 15 S 1.65599 * 119.99881 * 94.99880 * 5 4 3 16 16 O 1.42089 * 106.40502 * 336.46248 * 15 5 4 17 17 O 1.42106 * 106.39791 * 203.53871 * 15 5 4 18 18 N 1.65606 * 107.21663 * 90.00285 * 15 5 4 19 19 C 1.46503 * 120.00027 * 64.99934 * 18 15 5 20 20 H 1.09001 * 112.85028 * 346.19351 * 19 18 15 21 21 C 1.53779 * 113.61483 * 117.50168 * 19 18 15 22 22 C 1.53784 * 87.08045 * 139.98067 * 21 19 18 23 23 H 1.08994 * 113.61477 * 89.11454 * 22 21 19 24 24 C 1.52997 * 113.61270 * 220.02125 * 22 21 19 25 25 O 1.42902 * 109.47204 * 272.49576 * 24 22 21 26 26 C 1.53779 * 113.61085 * 215.00088 * 19 18 15 27 27 H 1.09005 * 109.47326 * 299.99904 * 1 2 3 28 28 H 1.09002 * 109.47426 * 59.99937 * 1 2 3 29 29 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47282 * 60.00073 * 3 2 1 31 31 H 1.09002 * 109.47254 * 300.00228 * 3 2 1 32 32 H 1.09001 * 109.47217 * 304.99761 * 4 3 2 33 33 H 1.09000 * 109.47347 * 185.00194 * 4 3 2 34 34 H 1.09000 * 109.47078 * 34.99873 * 6 5 4 35 35 H 1.09001 * 109.47020 * 154.99745 * 6 5 4 36 36 H 0.97000 * 119.99633 * 180.02562 * 10 9 7 37 37 H 0.96996 * 119.99543 * 244.99684 * 18 15 5 38 38 H 1.09002 * 113.61557 * 25.43179 * 21 19 18 39 39 H 1.09004 * 113.61501 * 254.52599 * 21 19 18 40 40 H 1.08998 * 109.47573 * 32.49481 * 24 22 21 41 41 H 1.09003 * 109.47157 * 152.50001 * 24 22 21 42 42 H 0.96701 * 113.99899 * 180.02562 * 25 24 22 43 43 H 1.08997 * 113.61646 * 105.47219 * 26 19 18 44 44 H 1.09000 * 113.61527 * 334.56490 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0004 -0.8950 -1.3781 7 6 5.2994 -1.4246 -0.8274 8 1 6.0332 -0.7423 -0.4247 9 6 5.5508 -2.7802 -0.8377 10 7 4.6569 -3.6111 -1.3276 11 14 7.1607 -3.4367 -0.1544 12 1 7.9893 -2.3052 0.3338 13 1 6.8792 -4.3658 0.9693 14 1 7.8936 -4.1610 -1.2238 15 16 4.4454 1.5130 -2.5262 16 8 3.8178 2.7742 -2.3401 17 8 4.2757 0.7256 -3.6969 18 7 6.0733 1.7731 -2.3695 19 6 7.0082 0.6503 -2.4769 20 1 6.5136 -0.3193 -2.4196 21 6 7.9883 0.7753 -3.6554 22 6 9.0693 0.2200 -2.7130 23 1 9.1390 -0.8676 -2.7214 24 6 10.4284 0.9051 -2.8684 25 8 11.1786 0.2485 -3.8923 26 6 8.2293 0.7747 -1.5504 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.8515 0.5683 0.8410 33 1 3.9786 2.1765 0.0890 34 1 3.1678 -1.3219 -0.8189 35 1 3.9118 -1.1709 -2.4289 36 1 4.8337 -4.5648 -1.3345 37 1 6.4078 2.6689 -2.2065 38 1 8.1674 1.8044 -3.9670 39 1 7.7546 0.1139 -4.4897 40 1 10.2797 1.9501 -3.1405 41 1 10.9735 0.8491 -1.9261 42 1 12.0536 0.6307 -4.0452 43 1 8.1902 0.1126 -0.6854 44 1 8.4742 1.8035 -1.2866 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464276983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:51 Heat of formation + Delta-G solvation = -153.791809 kcal Electronic energy + Delta-G solvation = -27443.738911 eV Core-core repulsion = 23523.879172 eV Total energy + Delta-G solvation = -3919.859739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.14232 -37.69796 -36.60132 -36.30392 -35.30548 -35.13985 -32.67965 -32.54723 -29.46897 -27.39561 -26.73301 -25.63842 -25.35806 -22.80320 -21.98391 -21.75202 -19.60984 -18.68226 -17.32012 -17.16947 -16.89116 -16.38720 -15.95719 -15.69305 -15.60563 -15.29649 -14.86466 -14.45500 -14.39910 -14.23130 -13.54687 -13.31150 -12.65403 -12.45664 -12.33025 -12.19195 -12.05222 -11.90940 -11.87918 -11.64782 -11.52349 -11.37473 -11.18551 -11.04825 -10.88082 -10.70881 -10.52487 -10.46502 -10.33202 -10.17711 -10.04336 -9.80491 -9.60237 -9.25745 -8.90019 -8.44164 -7.98207 -6.07017 -4.12858 1.35083 3.25702 3.33314 3.35347 3.58082 4.17714 4.20602 4.23538 4.37961 4.80214 4.87179 5.13422 5.15365 5.23666 5.27143 5.37733 5.45631 5.47109 5.55487 5.58328 5.66655 5.68831 5.72429 5.82148 5.92102 5.92433 5.97161 6.16115 6.32532 6.36653 6.41067 6.42261 6.59883 6.96602 7.37257 7.53970 7.58098 7.60739 7.62984 7.80387 7.93665 8.22695 8.92857 9.51270 11.00485 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.005741 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.758254 B = 4876.432018 C = 6564.580102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.138 3.862 5 N -0.985 5.985 6 C 0.242 3.758 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.068 3.932 10 N -0.882 5.882 11 Si 0.884 3.116 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.282 1.282 15 S 2.780 3.220 16 O -1.007 7.007 17 O -0.977 6.977 18 N -1.116 6.116 19 C 0.129 3.871 20 H 0.151 0.849 21 C -0.145 4.145 22 C -0.113 4.113 23 H 0.101 0.899 24 C 0.089 3.911 25 O -0.572 6.572 26 C -0.137 4.137 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.263 0.737 37 H 0.404 0.596 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.373 0.627 43 H 0.081 0.919 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.581 11.012 1.923 12.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.010 3.990 5 N -0.826 5.826 6 C 0.120 3.880 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.136 4.136 10 N -0.520 5.520 11 Si 0.711 3.289 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.208 1.208 15 S 2.789 3.211 16 O -0.992 6.992 17 O -0.960 6.960 18 N -0.872 5.872 19 C 0.021 3.979 20 H 0.169 0.831 21 C -0.185 4.185 22 C -0.132 4.132 23 H 0.119 0.881 24 C 0.012 3.988 25 O -0.376 6.376 26 C -0.177 4.177 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.235 0.765 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.219 0.781 43 H 0.099 0.901 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.439 10.406 1.116 11.016 hybrid contribution 1.601 0.384 0.922 1.887 sum 5.040 10.790 2.038 12.082 Atomic orbital electron populations 1.22700 0.82407 1.02427 0.99080 1.88103 1.18402 1.27043 1.95145 1.23110 0.95499 0.85161 0.99812 1.21044 0.91231 0.97699 0.88991 1.57612 1.78654 1.19385 1.26952 1.19327 0.98171 0.71561 0.98972 1.21683 1.03045 0.92201 1.41381 0.91516 1.24933 0.96618 0.96924 0.95133 1.69953 1.34186 1.03178 1.44687 0.86678 0.83928 0.79308 0.78947 1.19421 1.21046 1.20800 1.01885 0.72812 0.72297 0.74124 1.93526 1.74715 1.43616 1.87303 1.93588 1.85212 1.70851 1.46366 1.55998 1.26273 1.15401 1.89507 1.22704 0.88755 0.91682 0.94718 0.83136 1.23528 0.95701 1.01111 0.98163 1.22376 0.91631 1.01411 0.97812 0.88058 1.22197 0.92095 0.94815 0.89724 1.86549 1.32203 1.60415 1.58481 1.23349 0.95400 1.01216 0.97686 0.94832 0.94627 0.89858 0.93232 0.93320 0.89182 0.90343 0.92462 0.93540 0.92702 0.76466 0.90333 0.90709 0.93767 0.93821 0.78077 0.90063 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.79 9.02 -35.23 -0.32 -7.10 16 3 C 0.04 0.70 6.28 37.16 0.23 0.93 16 4 C 0.14 2.35 5.79 -4.04 -0.02 2.33 16 5 N -0.98 -19.98 2.81 -115.66 -0.33 -20.30 16 6 C 0.24 5.92 5.20 -5.19 -0.03 5.89 16 7 C -0.54 -13.54 7.03 -34.44 -0.24 -13.79 16 8 H 0.07 1.56 6.76 -52.49 -0.35 1.21 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.88 -24.88 13.29 55.43 0.74 -24.15 16 11 Si 0.88 20.09 29.54 -169.99 -5.02 15.07 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 S 2.78 54.72 6.04 -107.50 -0.65 54.07 16 16 O -1.01 -20.07 17.11 -57.17 -0.98 -21.04 16 17 O -0.98 -22.97 16.45 -57.17 -0.94 -23.91 16 18 N -1.12 -18.03 5.84 -4.20 -0.02 -18.05 16 19 C 0.13 2.20 3.68 -67.12 -0.25 1.95 16 20 H 0.15 3.13 5.26 -51.93 -0.27 2.85 16 21 C -0.15 -2.24 7.43 -25.92 -0.19 -2.43 16 22 C -0.11 -1.65 4.01 -89.80 -0.36 -2.01 16 23 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 24 C 0.09 1.05 6.88 37.16 0.26 1.30 16 25 O -0.57 -7.02 13.66 -35.23 -0.48 -7.50 16 26 C -0.14 -1.98 7.41 -25.92 -0.19 -2.17 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 33 H 0.08 1.13 7.61 -51.93 -0.40 0.73 16 34 H 0.06 1.51 6.60 -51.93 -0.34 1.17 16 35 H 0.05 1.27 6.91 -51.93 -0.36 0.91 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.40 5.22 8.94 -34.47 -0.31 4.92 16 38 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.04 0.45 7.84 -51.93 -0.41 0.04 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.37 2.64 9.12 45.56 0.42 3.06 16 43 H 0.08 1.28 7.90 -51.93 -0.41 0.87 16 44 H 0.08 0.95 8.10 -51.93 -0.42 0.52 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -33.13 369.77 -8.41 -41.54 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.20 Total: 10.57 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 0.22 Total: -4.76 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.39 Total: -62.50 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -2.72 Total: -59.56 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 54.72 SS G_CDS: -0.65 Total: 54.07 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.13 -8.41 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464276983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.253 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds