Wall clock time and date at job start Fri Apr 10 2020 18:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99866 * 2 1 4 4 C 1.53003 * 109.46937 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47387 * 64.99926 * 4 3 2 6 6 C 1.46501 * 119.99995 * 274.99962 * 5 4 3 7 7 C 1.50700 * 109.47235 * 275.00090 * 6 5 4 8 8 H 1.07993 * 119.99864 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99968 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99886 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99871 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47070 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47128 * 120.00066 * 11 9 7 14 14 H 1.48504 * 109.47053 * 240.00040 * 11 9 7 15 15 S 1.65599 * 119.99881 * 94.99880 * 5 4 3 16 16 O 1.42089 * 106.40502 * 336.46248 * 15 5 4 17 17 O 1.42106 * 106.39791 * 203.53871 * 15 5 4 18 18 N 1.65606 * 107.21663 * 90.00285 * 15 5 4 19 19 C 1.46503 * 120.00027 * 64.99934 * 18 15 5 20 20 H 1.09001 * 112.85028 * 346.19351 * 19 18 15 21 21 C 1.53779 * 113.61483 * 117.50168 * 19 18 15 22 22 C 1.53784 * 87.08045 * 139.98067 * 21 19 18 23 23 H 1.08994 * 113.61477 * 89.11454 * 22 21 19 24 24 C 1.52997 * 113.61270 * 220.02125 * 22 21 19 25 25 O 1.42902 * 109.47204 * 272.49576 * 24 22 21 26 26 C 1.53779 * 113.61085 * 215.00088 * 19 18 15 27 27 H 1.09005 * 109.47326 * 299.99904 * 1 2 3 28 28 H 1.09002 * 109.47426 * 59.99937 * 1 2 3 29 29 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47282 * 60.00073 * 3 2 1 31 31 H 1.09002 * 109.47254 * 300.00228 * 3 2 1 32 32 H 1.09001 * 109.47217 * 304.99761 * 4 3 2 33 33 H 1.09000 * 109.47347 * 185.00194 * 4 3 2 34 34 H 1.09000 * 109.47078 * 34.99873 * 6 5 4 35 35 H 1.09001 * 109.47020 * 154.99745 * 6 5 4 36 36 H 0.97000 * 119.99633 * 180.02562 * 10 9 7 37 37 H 0.96996 * 119.99543 * 244.99684 * 18 15 5 38 38 H 1.09002 * 113.61557 * 25.43179 * 21 19 18 39 39 H 1.09004 * 113.61501 * 254.52599 * 21 19 18 40 40 H 1.08998 * 109.47573 * 32.49481 * 24 22 21 41 41 H 1.09003 * 109.47157 * 152.50001 * 24 22 21 42 42 H 0.96701 * 113.99899 * 180.02562 * 25 24 22 43 43 H 1.08997 * 113.61646 * 105.47219 * 26 19 18 44 44 H 1.09000 * 113.61527 * 334.56490 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0004 -0.8950 -1.3781 7 6 5.2994 -1.4246 -0.8274 8 1 6.0332 -0.7423 -0.4247 9 6 5.5508 -2.7802 -0.8377 10 7 4.6569 -3.6111 -1.3276 11 14 7.1607 -3.4367 -0.1544 12 1 7.9893 -2.3052 0.3338 13 1 6.8792 -4.3658 0.9693 14 1 7.8936 -4.1610 -1.2238 15 16 4.4454 1.5130 -2.5262 16 8 3.8178 2.7742 -2.3401 17 8 4.2757 0.7256 -3.6969 18 7 6.0733 1.7731 -2.3695 19 6 7.0082 0.6503 -2.4769 20 1 6.5136 -0.3193 -2.4196 21 6 7.9883 0.7753 -3.6554 22 6 9.0693 0.2200 -2.7130 23 1 9.1390 -0.8676 -2.7214 24 6 10.4284 0.9051 -2.8684 25 8 11.1786 0.2485 -3.8923 26 6 8.2293 0.7747 -1.5504 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.8515 0.5683 0.8410 33 1 3.9786 2.1765 0.0890 34 1 3.1678 -1.3219 -0.8189 35 1 3.9118 -1.1709 -2.4289 36 1 4.8337 -4.5648 -1.3345 37 1 6.4078 2.6689 -2.2065 38 1 8.1674 1.8044 -3.9670 39 1 7.7546 0.1139 -4.4897 40 1 10.2797 1.9501 -3.1405 41 1 10.9735 0.8491 -1.9261 42 1 12.0536 0.6307 -4.0452 43 1 8.1902 0.1126 -0.6854 44 1 8.4742 1.8035 -1.2866 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464276983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:51 Heat of formation + Delta-G solvation = -182.442881 kcal Electronic energy + Delta-G solvation = -27444.981315 eV Core-core repulsion = 23523.879172 eV Total energy + Delta-G solvation = -3921.102143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33216 -39.04517 -38.23612 -37.28204 -36.92041 -36.82927 -34.51207 -33.96093 -31.01937 -28.56736 -28.30474 -26.97962 -26.54803 -24.57235 -23.31819 -23.13072 -20.89574 -20.13737 -18.77601 -18.57159 -18.26011 -18.04961 -17.41028 -17.04845 -16.99753 -16.58566 -16.27124 -16.03363 -15.76874 -15.31847 -15.07889 -14.47274 -14.45043 -13.91585 -13.70233 -13.50881 -13.48583 -13.34495 -13.30271 -13.18007 -13.13107 -12.93727 -12.69480 -12.59799 -12.50439 -12.20052 -11.96052 -11.83956 -11.76951 -11.66072 -11.55948 -11.26106 -10.70158 -10.56041 -10.46637 -10.23802 -9.68449 -8.09045 -6.20344 -0.23816 1.44003 1.46535 1.56040 2.04885 2.46449 2.66028 3.00619 3.22785 3.32203 3.49875 3.64959 3.81672 3.95849 4.03911 4.16833 4.22206 4.41113 4.42617 4.50733 4.54738 4.56014 4.59499 4.60848 4.74598 4.83479 4.85472 4.93758 4.96304 5.08278 5.14075 5.19131 5.25544 5.51012 5.66798 5.68625 5.83681 5.97362 6.21161 6.32906 6.41383 6.92859 7.00391 7.47458 8.99357 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.005741 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.758254 B = 4876.432018 C = 6564.580102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.039 3.961 4 C 0.128 3.872 5 N -0.989 5.989 6 C 0.262 3.738 7 C -0.532 4.532 8 H 0.084 0.916 9 C 0.013 3.987 10 N -0.928 5.928 11 Si 0.944 3.056 12 H -0.244 1.244 13 H -0.286 1.286 14 H -0.288 1.288 15 S 2.794 3.206 16 O -1.007 7.007 17 O -1.021 7.021 18 N -1.097 6.097 19 C 0.112 3.888 20 H 0.110 0.890 21 C -0.143 4.143 22 C -0.115 4.115 23 H 0.075 0.925 24 C 0.093 3.907 25 O -0.597 6.597 26 C -0.120 4.120 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.032 0.968 35 H 0.006 0.994 36 H 0.261 0.739 37 H 0.423 0.577 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.396 0.604 43 H 0.069 0.931 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 13.650 3.494 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.039 4.039 4 C 0.002 3.998 5 N -0.829 5.829 6 C 0.138 3.862 7 C -0.571 4.571 8 H 0.102 0.898 9 C -0.187 4.187 10 N -0.568 5.568 11 Si 0.769 3.231 12 H -0.167 1.167 13 H -0.213 1.213 14 H -0.215 1.215 15 S 2.802 3.198 16 O -0.991 6.991 17 O -1.005 7.005 18 N -0.858 5.858 19 C 0.005 3.995 20 H 0.127 0.873 21 C -0.183 4.183 22 C -0.134 4.134 23 H 0.093 0.907 24 C 0.016 3.984 25 O -0.406 6.406 26 C -0.160 4.160 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.130 0.870 34 H 0.051 0.949 35 H 0.024 0.976 36 H 0.070 0.930 37 H 0.259 0.741 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.245 0.755 43 H 0.088 0.912 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.585 13.106 2.708 14.502 hybrid contribution 0.888 -0.368 0.384 1.036 sum 6.473 12.738 3.093 14.619 Atomic orbital electron populations 1.22876 0.80540 1.03102 1.00621 1.88052 1.20695 1.28519 1.95447 1.23211 0.94823 0.84713 1.01142 1.21382 0.92288 0.98924 0.87222 1.57469 1.79456 1.17546 1.28446 1.18767 0.97362 0.74066 0.95964 1.21959 1.03068 0.92314 1.39761 0.89834 1.25752 0.99726 0.97481 0.95702 1.70102 1.36481 1.03328 1.46903 0.85716 0.80345 0.79184 0.77832 1.16707 1.21276 1.21480 1.01293 0.73540 0.71671 0.73267 1.93515 1.75346 1.43078 1.87163 1.93537 1.86208 1.72042 1.48696 1.55543 1.24612 1.16407 1.89233 1.22627 0.89330 0.90092 0.97450 0.87262 1.23559 0.95489 1.02219 0.97002 1.22314 0.93522 1.00246 0.97321 0.90699 1.22161 0.90421 0.95239 0.90601 1.86489 1.33945 1.61388 1.58746 1.23301 0.93063 1.03108 0.96498 0.92068 0.94183 0.89784 0.89506 0.94169 0.89495 0.87045 0.94949 0.97569 0.92970 0.74073 0.87694 0.93025 0.91449 0.92014 0.75470 0.91228 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -15.10 9.02 -148.98 -1.34 -16.44 16 3 C 0.04 1.23 6.28 71.98 0.45 1.69 16 4 C 0.13 4.20 5.79 86.38 0.50 4.70 16 5 N -0.99 -40.36 2.81 -519.85 -1.46 -41.82 16 6 C 0.26 13.39 5.20 85.63 0.44 13.83 16 7 C -0.53 -26.98 7.03 25.60 0.18 -26.80 16 8 H 0.08 3.86 6.76 -2.91 -0.02 3.84 16 9 C 0.01 0.68 5.46 84.66 0.46 1.14 16 10 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 11 Si 0.94 41.63 29.54 68.60 2.03 43.66 16 12 H -0.24 -9.64 7.11 99.48 0.71 -8.93 16 13 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 14 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 15 S 2.79 109.38 6.04 -56.49 -0.34 109.04 16 16 O -1.01 -38.59 17.11 -128.00 -2.19 -40.78 16 17 O -1.02 -49.76 16.45 -128.00 -2.11 -51.87 16 18 N -1.10 -33.49 5.84 -167.20 -0.98 -34.47 16 19 C 0.11 3.72 3.68 45.52 0.17 3.89 16 20 H 0.11 4.64 5.26 -2.39 -0.01 4.63 16 21 C -0.14 -4.22 7.43 31.12 0.23 -3.99 16 22 C -0.11 -3.10 4.01 -10.27 -0.04 -3.14 16 23 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 24 C 0.09 1.84 6.88 71.98 0.50 2.33 16 25 O -0.60 -13.07 13.66 -148.98 -2.04 -15.10 16 26 C -0.12 -3.12 7.41 31.12 0.23 -2.89 16 27 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 2.92 8.11 -2.39 -0.02 2.90 16 33 H 0.11 2.88 7.61 -2.39 -0.02 2.87 16 34 H 0.03 1.81 6.60 -2.39 -0.02 1.79 16 35 H 0.01 0.37 6.91 -2.39 -0.02 0.35 16 36 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.42 9.51 8.94 -96.75 -0.87 8.64 16 38 H 0.10 2.51 7.90 -2.39 -0.02 2.49 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 40 H 0.07 1.04 7.84 -2.39 -0.02 1.02 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.40 4.38 9.12 -74.06 -0.68 3.71 16 43 H 0.07 1.99 7.90 -2.39 -0.02 1.97 16 44 H 0.12 2.16 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -75.04 369.77 -4.30 -79.34 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -0.52 Total: 30.09 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 4.37 Total: -7.29 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -2.15 Total: -130.64 kcal Atomic # 8 Polarization: -116.52 SS G_CDS: -7.67 Total: -124.19 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 109.38 SS G_CDS: -0.34 Total: 109.04 kcal Total: -75.04 -4.30 -79.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464276983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.107 kcal (2) G-P(sol) polarization free energy of solvation -75.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds