Wall clock time and date at job start Fri Apr 10 2020 18:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48507 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47063 * 299.99247 * 3 2 1 6 6 H 1.48495 * 109.47716 * 59.99516 * 3 2 1 7 7 C 1.38805 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99778 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00433 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00543 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47120 * 179.97438 * 10 9 7 12 12 C 1.53785 * 113.61078 * 174.99930 * 11 10 9 13 13 C 1.53787 * 87.07922 * 139.97949 * 12 11 10 14 14 N 1.46497 * 113.61411 * 89.11348 * 13 12 11 15 15 C 1.34777 * 119.99525 * 156.52516 * 14 13 12 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 N 1.46499 * 109.47257 * 180.27849 * 17 15 14 19 19 C 1.34581 * 125.75010 * 124.99569 * 18 17 15 20 20 N 1.30871 * 107.62605 * 180.02562 * 19 18 17 21 21 C 1.34548 * 107.26963 * 0.02562 * 20 19 18 22 22 C 1.47871 * 126.04638 * 180.02562 * 21 20 19 23 23 N 1.34771 * 120.00478 * 359.97438 * 22 21 20 24 24 O 1.21556 * 119.99453 * 179.97438 * 22 21 20 25 25 N 1.28849 * 125.74639 * 304.69569 * 18 17 15 26 26 C 1.53782 * 87.17311 * 334.52146 * 13 12 11 27 27 H 0.97003 * 119.99943 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99372 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47012 * 59.99143 * 10 9 7 30 30 H 1.09004 * 109.46654 * 299.99854 * 10 9 7 31 31 H 1.08998 * 112.85234 * 43.79937 * 11 10 9 32 32 H 1.08995 * 113.61808 * 25.42895 * 12 11 10 33 33 H 1.09002 * 113.60904 * 254.52622 * 12 11 10 34 34 H 1.08999 * 113.60941 * 219.93340 * 13 12 11 35 35 H 0.97000 * 120.00580 * 336.53261 * 14 13 12 36 36 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 37 37 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 38 38 H 1.08001 * 126.19172 * 359.97156 * 19 18 17 39 39 H 0.97001 * 119.99663 * 359.97438 * 23 22 21 40 40 H 0.96998 * 120.00307 * 180.02562 * 23 22 21 41 41 H 1.09000 * 113.61457 * 140.02206 * 26 13 12 42 42 H 1.08997 * 113.61654 * 270.92678 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2127 6 1 1.8914 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8197 0.0021 12 6 1.7306 -6.2001 -0.1196 13 6 0.7046 -6.6992 0.9116 14 7 -0.5386 -7.1904 0.3121 15 6 -1.3113 -8.0658 0.9852 16 8 -0.9777 -8.4467 2.0873 17 6 -2.5932 -8.5664 0.3711 18 7 -3.2480 -9.4946 1.2962 19 6 -4.5098 -9.3905 1.7528 20 7 -4.7262 -10.4027 2.5536 21 6 -3.5957 -11.1314 2.5908 22 6 -3.3842 -12.3701 3.3703 23 7 -4.3789 -12.8641 4.1337 24 8 -2.3131 -12.9427 3.3224 25 7 -2.7147 -10.5512 1.8056 26 6 0.6157 -5.2479 1.4124 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6842 -3.7141 0.8921 30 1 2.6854 -3.7149 -0.8879 31 1 0.2380 -4.6707 -0.6935 32 1 2.7587 -6.2219 0.2417 33 1 1.6169 -6.6546 -1.1038 34 1 1.1226 -7.3892 1.6446 35 1 -0.8056 -6.8856 -0.5692 36 1 -3.2551 -7.7230 0.1735 37 1 -2.3717 -9.0811 -0.5638 38 1 -5.2157 -8.6119 1.5042 39 1 -5.2336 -12.4069 4.1722 40 1 -4.2400 -13.6764 4.6453 41 1 -0.3974 -4.9342 1.6641 42 1 1.3395 -5.0098 2.1917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485092792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:04 Heat of formation + Delta-G solvation = 25.496570 kcal Electronic energy + Delta-G solvation = -25802.669576 eV Core-core repulsion = 21819.725915 eV Total energy + Delta-G solvation = -3982.943661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.50046 -41.32237 -40.32880 -39.52269 -36.36443 -35.64399 -34.69244 -34.45767 -32.93464 -32.68984 -29.78519 -28.30177 -26.63802 -25.77990 -25.11704 -23.65250 -22.91807 -22.13537 -21.59619 -20.35640 -19.30242 -19.07119 -18.74195 -18.18857 -17.51494 -17.28204 -16.83468 -16.59130 -16.42770 -16.03250 -15.83166 -15.56483 -15.45696 -15.12921 -15.07203 -14.68287 -14.53450 -13.85812 -13.69012 -13.38596 -13.12149 -12.98394 -12.89338 -12.71232 -12.13226 -11.93833 -11.77253 -11.67604 -11.61903 -11.54965 -11.36176 -11.20336 -11.14974 -10.87295 -10.85604 -10.51785 -10.10679 -8.96859 -7.95487 -5.22873 0.29487 0.98818 1.16470 1.42729 1.47398 1.47930 1.57779 1.98671 2.23379 2.33953 2.55974 3.17807 3.37771 3.42402 3.57446 3.58910 3.68769 3.90087 3.92855 3.95487 4.09244 4.16755 4.34327 4.56726 4.76262 4.83323 4.84520 4.88444 4.92011 4.99377 5.14536 5.23904 5.26488 5.34505 5.49519 5.52698 5.66230 5.74063 6.19941 6.28237 6.43401 6.96039 7.13174 7.17069 7.34533 8.12337 8.35061 9.28098 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.001912 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.274574 B =14644.156182 C =15110.913629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.743 5.743 10 C 0.157 3.843 11 C -0.106 4.106 12 C -0.117 4.117 13 C 0.127 3.873 14 N -0.689 5.689 15 C 0.497 3.503 16 O -0.571 6.571 17 C 0.099 3.901 18 N -0.292 5.292 19 C 0.212 3.788 20 N -0.498 5.498 21 C 0.107 3.893 22 C 0.617 3.383 23 N -0.805 5.805 24 O -0.572 6.572 25 N -0.265 5.265 26 C -0.142 4.142 27 H 0.251 0.749 28 H 0.375 0.625 29 H 0.015 0.985 30 H 0.022 0.978 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.423 0.577 36 H 0.199 0.801 37 H 0.163 0.837 38 H 0.284 0.716 39 H 0.423 0.577 40 H 0.421 0.579 41 H 0.057 0.943 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.069 -22.252 -1.557 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.800 3.200 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.386 5.386 10 C 0.031 3.969 11 C -0.125 4.125 12 C -0.155 4.155 13 C 0.021 3.979 14 N -0.342 5.342 15 C 0.282 3.718 16 O -0.449 6.449 17 C -0.023 4.023 18 N -0.088 5.088 19 C -0.082 4.082 20 N -0.224 5.224 21 C -0.172 4.172 22 C 0.398 3.602 23 N -0.371 5.371 24 O -0.448 6.448 25 N -0.105 5.105 26 C -0.181 4.181 27 H 0.060 0.940 28 H 0.207 0.793 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.261 0.739 36 H 0.216 0.784 37 H 0.180 0.820 38 H 0.299 0.701 39 H 0.255 0.745 40 H 0.256 0.744 41 H 0.076 0.924 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.575 -23.024 -0.833 25.784 hybrid contribution -0.209 1.555 0.071 1.571 sum -11.784 -21.469 -0.762 24.502 Atomic orbital electron populations 1.69803 1.06437 1.25931 1.59670 1.25524 0.96447 1.00954 1.03872 0.85112 0.78212 0.79995 0.76678 1.19260 1.21846 1.22211 1.19682 0.91480 0.85628 1.40909 0.90930 1.42551 1.05636 1.01141 1.89260 1.20843 0.93947 0.84778 0.97340 1.22735 0.98606 0.93870 0.97298 1.23215 0.98668 0.93677 0.99963 1.21704 0.85283 0.94180 0.96727 1.45400 1.22451 1.44557 1.21792 1.21039 0.86334 0.78767 0.85632 1.90844 1.73388 1.58520 1.22166 1.22408 0.93734 0.94617 0.91568 1.47149 1.11242 1.17002 1.33366 1.27617 0.87302 0.99794 0.93482 1.71185 1.24573 1.06378 1.20296 1.23676 0.89131 1.00720 1.03676 1.16503 0.83892 0.81189 0.78621 1.43229 1.15906 1.30687 1.47311 1.90852 1.27259 1.60676 1.66047 1.74343 1.24931 0.99477 1.11739 1.23444 1.01427 0.95835 0.97399 0.94021 0.79348 0.96723 0.96005 0.88553 0.88255 0.88400 0.89904 0.73904 0.78362 0.81993 0.70085 0.74524 0.74446 0.92432 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.85 13.06 21.65 0.28 -57.57 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 7 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.74 -36.43 5.60 -343.45 -1.92 -38.35 16 10 C 0.16 5.85 6.10 86.38 0.53 6.37 16 11 C -0.11 -2.83 3.65 -10.17 -0.04 -2.86 16 12 C -0.12 -2.26 7.38 31.12 0.23 -2.03 16 13 C 0.13 2.73 4.29 45.52 0.20 2.93 16 14 N -0.69 -10.46 5.26 -440.03 -2.32 -12.78 16 15 C 0.50 9.21 7.84 87.66 0.69 9.89 16 16 O -0.57 -18.10 15.30 -3.04 -0.05 -18.15 16 17 C 0.10 0.72 6.93 85.63 0.59 1.31 16 18 N -0.29 -4.73 3.17 -355.64 -1.13 -5.86 16 19 C 0.21 2.47 12.57 180.30 2.27 4.73 16 20 N -0.50 -9.24 11.09 -193.03 -2.14 -11.38 16 21 C 0.11 2.72 7.96 137.13 1.09 3.81 16 22 C 0.62 15.74 8.10 86.79 0.70 16.45 16 23 N -0.81 -11.40 8.87 -175.59 -1.56 -12.96 16 24 O -0.57 -19.60 17.92 -3.89 -0.07 -19.67 16 25 N -0.27 -7.14 11.06 -52.43 -0.58 -7.72 16 26 C -0.14 -3.85 7.45 31.22 0.23 -3.61 16 27 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.37 19.30 7.67 -92.71 -0.71 18.59 16 29 H 0.01 0.57 7.85 -2.39 -0.02 0.55 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.10 1.91 8.10 -2.39 -0.02 1.90 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 2.14 7.50 -2.39 -0.02 2.13 16 35 H 0.42 3.24 8.70 -92.71 -0.81 2.44 16 36 H 0.20 -0.82 8.06 -2.38 -0.02 -0.84 16 37 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.28 -0.43 8.06 -2.91 -0.02 -0.45 16 39 H 0.42 4.11 8.54 -92.71 -0.79 3.32 16 40 H 0.42 4.10 8.93 -92.71 -0.83 3.28 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 2.29 7.90 -2.39 -0.02 2.27 16 Total: -1.00 -94.64 368.14 -1.68 -96.32 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -2.02 Total: 20.02 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 7.80 Total: 20.52 kcal Atomic # 7 Polarization: -137.24 SS G_CDS: -9.36 Total: -146.61 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.12 Total: -37.82 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -94.64 -1.68 -96.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485092792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.820 kcal (2) G-P(sol) polarization free energy of solvation -94.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds