Wall clock time and date at job start Fri Apr 10 2020 18:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46927 * 2 1 4 4 N 1.46490 * 109.47074 * 239.99844 * 2 1 3 5 5 C 1.34773 * 120.00283 * 85.00146 * 4 2 1 6 6 O 1.21625 * 119.99749 * 359.97438 * 5 4 2 7 7 C 1.47235 * 120.00502 * 179.97438 * 5 4 2 8 8 C 1.37009 * 127.18985 * 179.97438 * 7 5 4 9 9 N 1.33320 * 106.37216 * 180.02562 * 8 7 5 10 10 N 1.28518 * 109.43855 * 0.02562 * 9 8 7 11 11 N 1.28715 * 110.63695 * 359.97438 * 10 9 8 12 12 H 0.97001 * 126.03157 * 179.72869 * 11 10 9 13 13 C 1.53004 * 109.47071 * 119.99905 * 2 1 3 14 14 C 1.53935 * 113.73422 * 281.87139 * 13 2 1 15 15 N 1.48184 * 86.10333 * 221.95973 * 14 13 2 16 16 C 1.46898 * 111.07478 * 137.52135 * 15 14 13 17 17 C 1.50699 * 109.47182 * 90.56400 * 16 15 14 18 18 O 1.21300 * 119.99681 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00104 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00007 * 180.02562 * 19 17 16 21 21 H 1.07990 * 120.00087 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99805 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00054 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00028 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46663 * 59.99793 * 24 22 20 26 26 H 1.48494 * 109.47101 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46906 * 299.99882 * 24 22 20 28 28 C 1.47964 * 90.79720 * 24.59628 * 15 14 13 29 29 H 1.08998 * 109.47417 * 180.09771 * 1 2 3 30 30 H 1.09004 * 109.47075 * 300.09677 * 1 2 3 31 31 H 1.09000 * 109.46946 * 60.09280 * 1 2 3 32 32 H 0.97003 * 120.00490 * 264.99939 * 4 2 1 33 33 H 1.07993 * 126.81277 * 0.02562 * 8 7 5 34 34 H 1.08998 * 112.93584 * 53.43600 * 13 2 1 35 35 H 1.09004 * 113.75822 * 336.23830 * 14 13 2 36 36 H 1.08997 * 113.76019 * 107.59959 * 14 13 2 37 37 H 1.08995 * 109.46823 * 210.56293 * 16 15 14 38 38 H 1.09001 * 109.47053 * 330.56431 * 16 15 14 39 39 H 0.97001 * 120.00072 * 359.97438 * 19 17 16 40 40 H 0.97008 * 119.99913 * 180.02562 * 23 22 20 41 41 H 1.09000 * 113.76022 * 221.08278 * 28 15 14 42 42 H 1.09006 * 113.75241 * 89.72356 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8574 1.1616 -2.4118 7 6 2.6384 -0.7123 -3.5591 8 6 2.8243 -0.1770 -4.8065 9 7 3.2789 -1.1662 -5.5760 10 7 3.3741 -2.2415 -4.8785 11 7 3.0042 -2.0287 -3.6641 12 1 2.9838 -2.6854 -2.9505 13 6 2.0400 -0.7212 1.2493 14 6 1.9732 0.1327 2.5283 15 7 3.3109 -0.4201 2.8460 16 6 4.2039 0.6238 3.3664 17 6 4.0863 0.6829 4.8677 18 8 3.3330 -0.0709 5.4471 19 7 4.8181 1.5732 5.5664 20 6 4.7115 1.6266 6.9322 21 1 4.0409 0.9555 7.4481 22 6 5.4655 2.5448 7.6525 23 7 6.2812 3.3618 7.0246 24 14 5.3198 2.6181 9.5134 25 1 5.7043 1.3056 10.0920 26 1 6.2220 3.6738 10.0393 27 1 3.9178 2.9327 9.8881 28 6 3.5700 -0.6729 1.4114 29 1 -0.3634 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3633 0.5124 -0.8908 32 1 2.2490 -1.6318 -1.1526 33 1 2.6395 0.8438 -5.1068 34 1 1.6178 -1.7194 1.3656 35 1 1.9752 1.2063 2.3402 36 1 1.1924 -0.1771 3.2229 37 1 5.2327 0.3919 3.0914 38 1 3.9225 1.5874 2.9417 39 1 5.4207 2.1757 5.1030 40 1 6.8079 4.0026 7.5275 41 1 4.0628 -1.6252 1.2152 42 1 4.0400 0.1647 0.8959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485513260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:09 Heat of formation + Delta-G solvation = 62.629963 kcal Electronic energy + Delta-G solvation = -26232.090717 eV Core-core repulsion = 22250.757281 eV Total energy + Delta-G solvation = -3981.333436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.86051 -40.72462 -39.59473 -37.81632 -35.80626 -34.15231 -33.89012 -32.38031 -31.38289 -31.08175 -29.55783 -26.29938 -25.88529 -25.11032 -24.11708 -23.42372 -22.09516 -21.25156 -20.37957 -19.46203 -19.14068 -17.91503 -17.22706 -16.94314 -16.80291 -16.10086 -15.67384 -15.43717 -15.11421 -14.97887 -14.70354 -14.55646 -14.16916 -13.79769 -13.61857 -13.11083 -12.86306 -12.71973 -12.68795 -12.41570 -12.11433 -11.80357 -11.60488 -11.41739 -11.28844 -11.16226 -11.09689 -10.98568 -10.71525 -10.60882 -10.45411 -10.22224 -10.08174 -9.68535 -9.50502 -8.79965 -8.21440 -7.97533 -6.42696 -3.83720 0.35346 1.79258 1.87844 2.37140 2.55603 3.18813 3.24575 3.28727 3.76023 3.79458 3.89549 4.07574 4.17659 4.24375 4.36244 4.46080 4.63277 4.78456 4.93933 4.96883 5.06114 5.18245 5.27650 5.31714 5.34411 5.47014 5.53099 5.55881 5.61384 5.66237 5.77266 5.85945 5.91571 6.01972 6.11229 6.23714 6.49579 6.76673 7.07812 7.46216 7.53723 7.73421 8.04492 8.60703 9.17059 9.53259 10.05451 10.75025 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026779 B = 0.002063 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.352051 B =13570.189745 C =13868.154889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.095 0.905 4 N -0.716 5.716 5 C 0.596 3.404 6 O -0.510 6.510 7 C -0.067 4.067 8 C 0.034 3.966 9 N -0.269 5.269 10 N -0.045 5.045 11 N -0.374 5.374 12 H 0.451 0.549 13 C -0.128 4.128 14 C 0.024 3.976 15 N -0.448 5.448 16 C 0.010 3.990 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.003 3.997 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.396 0.604 33 H 0.205 0.795 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.391 0.609 40 H 0.272 0.728 41 H 0.087 0.913 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -8.011 -20.778 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.113 0.887 4 N -0.367 5.367 5 C 0.379 3.621 6 O -0.383 6.383 7 C -0.201 4.201 8 C -0.125 4.125 9 N -0.134 5.134 10 N -0.027 5.027 11 N -0.102 5.102 12 H 0.298 0.702 13 C -0.148 4.148 14 C -0.105 4.105 15 N -0.170 5.170 16 C -0.122 4.122 17 C 0.231 3.769 18 O -0.460 6.460 19 N -0.203 5.203 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.126 4.126 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.229 0.771 33 H 0.222 0.778 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.224 0.776 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.823 -8.929 -20.916 24.050 hybrid contribution 0.217 1.079 1.418 1.795 sum -7.607 -7.849 -19.497 22.352 Atomic orbital electron populations 1.22157 0.94336 1.02501 1.03147 1.21201 0.94692 0.97316 0.82099 0.88673 1.45955 1.67275 1.13775 1.09726 1.16745 0.77975 0.86210 0.81162 1.90904 1.49284 1.14228 1.83852 1.22425 1.12654 0.85769 0.99248 1.23967 0.99128 1.01258 0.88144 1.75039 1.16433 0.95960 1.25989 1.78260 1.15281 1.20672 0.88486 1.45616 1.43327 1.09589 1.11623 0.70222 1.23380 0.96566 1.01133 0.93683 1.23957 0.94680 0.97450 0.94430 1.68411 1.01811 1.33653 1.13104 1.22481 0.98635 0.94397 0.96703 1.19665 0.85134 0.84395 0.87754 1.90520 1.41141 1.43615 1.70714 1.41876 1.38423 1.32593 1.07449 1.19638 1.23510 1.18168 0.81550 0.88011 1.25262 0.96112 0.95934 1.00681 1.69606 1.26418 1.21608 1.36781 0.85917 0.78216 0.77939 0.82143 1.19902 1.20977 1.19910 1.23993 0.95315 1.02150 0.91166 0.92217 0.90711 0.91961 0.77076 0.77791 0.87571 0.91054 0.88590 0.89480 0.92380 0.77555 0.91826 0.89488 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.44 37.16 0.35 -0.81 16 2 C 0.15 1.12 2.29 -67.93 -0.16 0.97 16 3 H 0.10 0.89 7.48 -51.93 -0.39 0.50 16 4 N -0.72 -4.08 4.94 -54.95 -0.27 -4.35 16 5 C 0.60 4.74 7.77 -12.61 -0.10 4.64 16 6 O -0.51 -5.91 16.59 5.26 0.09 -5.82 16 7 C -0.07 -0.47 7.17 -82.33 -0.59 -1.06 16 8 C 0.03 0.28 11.87 -17.35 -0.21 0.07 16 9 N -0.27 -2.62 12.35 30.47 0.38 -2.25 16 10 N -0.04 -0.38 13.35 60.35 0.81 0.43 16 11 N -0.37 -1.97 6.97 33.31 0.23 -1.73 16 12 H 0.45 0.56 8.32 -190.33 -1.58 -1.02 16 13 C -0.13 -1.08 3.35 -89.69 -0.30 -1.38 16 14 C 0.02 0.30 7.43 -2.64 -0.02 0.28 16 15 N -0.45 -6.74 5.65 -239.52 -1.35 -8.10 16 16 C 0.01 0.17 5.28 -4.98 -0.03 0.14 16 17 C 0.45 10.45 7.83 -10.99 -0.09 10.36 16 18 O -0.58 -15.64 16.01 5.54 0.09 -15.55 16 19 N -0.57 -14.31 5.29 -10.97 -0.06 -14.37 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 24 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.00 0.03 7.39 -2.76 -0.02 0.01 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.40 1.08 7.87 -40.82 -0.32 0.76 16 33 H 0.21 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.86 7.38 -51.93 -0.38 0.47 16 36 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 38 H 0.06 0.89 7.39 -51.93 -0.38 0.51 16 39 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -35.80 364.65 -6.97 -42.77 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.68 Total: 6.06 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.39 Total: 5.24 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.46 Total: -54.17 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.18 Total: -21.38 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.80 -6.97 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485513260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.400 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds