Wall clock time and date at job start Fri Apr 10 2020 18:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.09000 * 110.88593 * 308.87975 * 11 10 9 13 13 C 1.55157 * 111.00340 * 72.80369 * 11 10 9 14 14 C 1.54323 * 102.94289 * 153.57745 * 13 11 10 15 15 N 1.47024 * 107.27227 * 337.80876 * 14 13 11 16 16 C 1.34774 * 125.65115 * 178.90796 * 15 14 13 17 17 O 1.21280 * 120.00020 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.99778 * 0.03260 * 16 15 14 19 19 N 1.46499 * 109.46917 * 179.97438 * 18 16 15 20 20 C 1.34594 * 125.74439 * 125.00519 * 19 18 16 21 21 N 1.30867 * 107.62510 * 179.97438 * 20 19 18 22 22 C 1.34554 * 107.27056 * 359.97438 * 21 20 19 23 23 C 1.47872 * 126.04942 * 179.97438 * 22 21 20 24 24 N 1.34770 * 120.00046 * 359.97438 * 23 22 21 25 25 O 1.21557 * 119.99879 * 179.97438 * 23 22 21 26 26 N 1.28851 * 125.75506 * 304.69674 * 19 18 16 27 27 C 1.47426 * 108.70092 * 358.93896 * 15 14 13 28 28 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 30 30 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 32 32 H 1.08998 * 110.71991 * 271.94019 * 13 11 10 33 33 H 1.08998 * 110.72043 * 35.21511 * 13 11 10 34 34 H 1.08998 * 109.88593 * 218.38999 * 14 13 11 35 35 H 1.09001 * 109.88477 * 97.22441 * 14 13 11 36 36 H 1.09001 * 109.47551 * 300.00302 * 18 16 15 37 37 H 1.09000 * 109.47097 * 60.00714 * 18 16 15 38 38 H 1.07993 * 126.18876 * 359.93964 * 20 19 18 39 39 H 0.97003 * 119.99922 * 359.97438 * 24 23 22 40 40 H 0.97006 * 120.00277 * 179.97438 * 24 23 22 41 41 H 1.09010 * 110.37044 * 265.29373 * 27 15 14 42 42 H 1.09000 * 110.46344 * 143.01450 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3250 -4.7034 0.7823 13 6 0.3773 -4.9577 -1.3954 14 6 0.0016 -6.4536 -1.4474 15 7 0.8817 -7.1578 -0.5034 16 6 0.8550 -8.4795 -0.2411 17 8 1.6314 -8.9544 0.5606 18 6 -0.1394 -9.3672 -0.9439 19 7 0.0334 -10.7493 -0.4898 20 6 -0.9295 -11.5316 0.0321 21 7 -0.3896 -12.6900 0.3135 22 6 0.9080 -12.6215 -0.0359 23 6 1.9053 -13.7042 0.1044 24 7 1.5408 -14.8929 0.6244 25 8 3.0540 -13.5220 -0.2493 26 7 1.1314 -11.4225 -0.5277 27 6 1.7978 -6.1786 0.1092 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6849 -3.7105 -0.8952 31 1 2.6843 -3.7187 0.8848 32 1 -0.5151 -4.3340 -1.4473 33 1 1.0719 -4.7065 -2.1970 34 1 0.1546 -6.8395 -2.4553 35 1 -1.0394 -6.5849 -1.1521 36 1 -1.1511 -9.0327 -0.7143 37 1 0.0248 -9.3158 -2.0203 38 1 -1.9609 -11.2536 0.1904 39 1 0.6243 -15.0382 0.9069 40 1 2.1950 -15.6033 0.7161 41 1 2.7415 -6.1493 -0.4357 42 1 1.9728 -6.4239 1.1567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491804528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:16 Heat of formation + Delta-G solvation = 44.077621 kcal Electronic energy + Delta-G solvation = -26058.165613 eV Core-core repulsion = 22076.027687 eV Total energy + Delta-G solvation = -3982.137926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.81381 -40.30258 -39.38923 -37.90029 -34.93510 -34.81505 -33.85865 -32.51159 -32.04931 -30.46381 -29.53328 -28.58038 -25.61771 -24.64313 -23.37618 -22.68994 -22.39814 -20.97248 -20.21122 -19.72852 -18.57453 -17.85961 -17.44212 -17.10545 -16.85490 -16.58037 -16.18008 -15.56404 -15.36662 -14.88344 -14.59387 -14.46151 -14.25186 -13.89497 -13.64264 -13.35907 -13.17302 -12.91090 -12.67068 -12.57944 -12.26252 -11.80022 -11.28155 -10.94356 -10.89162 -10.82056 -10.76346 -10.67969 -10.61831 -10.51845 -10.34789 -10.12339 -10.05561 -9.80137 -9.74071 -8.93861 -8.88128 -6.99978 -5.83377 -3.12250 1.09460 1.59682 1.73475 2.19015 2.62571 2.99167 3.12153 3.40574 3.45256 3.45961 3.75521 3.85891 4.03636 4.35032 4.38167 4.50163 4.54515 4.64849 4.72253 4.91280 5.13226 5.25818 5.44877 5.52036 5.59868 5.75146 5.85426 5.87817 5.89959 5.97660 6.00436 6.07312 6.26841 6.28375 6.39211 6.63693 6.73889 6.90232 7.18202 7.64186 7.64439 7.76560 7.92721 8.35553 9.47129 10.02905 10.37787 11.39355 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038993 B = 0.001921 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.908333 B =14571.617777 C =15008.276787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.121 4.121 14 C 0.092 3.908 15 N -0.612 5.612 16 C 0.514 3.486 17 O -0.512 6.512 18 C 0.104 3.896 19 N -0.289 5.289 20 C 0.196 3.804 21 N -0.485 5.485 22 C 0.129 3.871 23 C 0.624 3.376 24 N -0.834 5.834 25 O -0.518 6.518 26 N -0.217 5.217 27 C 0.115 3.885 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.229 0.771 39 H 0.411 0.589 40 H 0.410 0.590 41 H 0.074 0.926 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 -25.716 -3.059 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.124 4.124 12 H 0.105 0.895 13 C -0.159 4.159 14 C -0.031 4.031 15 N -0.347 5.347 16 C 0.299 3.701 17 O -0.386 6.386 18 C -0.020 4.020 19 N -0.085 5.085 20 C -0.099 4.099 21 N -0.211 5.211 22 C -0.151 4.151 23 C 0.405 3.595 24 N -0.400 5.400 25 O -0.390 6.390 26 N -0.055 5.055 27 C -0.008 4.008 28 H 0.066 0.934 29 H 0.217 0.783 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.245 0.755 39 H 0.241 0.759 40 H 0.242 0.758 41 H 0.092 0.908 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.812 -25.736 -2.983 26.552 hybrid contribution -0.517 0.990 0.145 1.126 sum -6.329 -24.746 -2.837 25.700 Atomic orbital electron populations 1.69643 1.05108 1.25834 1.57671 1.24734 0.95548 0.97723 1.02872 0.86253 0.78528 0.83407 0.77904 1.21243 1.21671 1.21234 1.19183 0.91062 0.84091 1.42915 0.91181 1.42283 1.05798 0.99786 1.89614 1.20554 0.92729 0.84830 0.98319 1.22582 0.98691 0.93598 0.97560 0.89544 1.22664 1.02380 0.92605 0.98214 1.22291 0.93904 0.94298 0.92576 1.48458 1.37070 1.05936 1.43215 1.19771 0.85265 0.81564 0.83524 1.90855 1.40358 1.73055 1.34361 1.21899 1.02226 0.75948 1.01966 1.46934 1.06255 1.12165 1.43108 1.26505 0.98173 0.86795 0.98446 1.71201 1.06235 1.21718 1.21922 1.23603 0.91713 0.93737 1.06011 1.16231 0.85076 0.80937 0.77290 1.43417 1.16434 1.14185 1.65938 1.90901 1.18490 1.80897 1.48716 1.74451 1.08638 1.04550 1.17902 1.22323 0.92703 0.86653 0.99086 0.93446 0.78263 0.95868 0.95943 0.89203 0.90016 0.91124 0.91084 0.84137 0.85258 0.75494 0.75949 0.75759 0.90800 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.32 5.55 -59.90 -0.33 -17.65 16 10 C 0.16 3.01 5.71 -4.04 -0.02 2.99 16 11 C -0.10 -1.46 3.05 -88.47 -0.27 -1.73 16 12 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.12 -1.39 6.37 -24.90 -0.16 -1.55 16 14 C 0.09 0.74 6.49 -3.06 -0.02 0.72 16 15 N -0.61 -6.61 3.33 -170.52 -0.57 -7.18 16 16 C 0.51 5.96 7.86 -10.99 -0.09 5.87 16 17 O -0.51 -8.61 15.94 5.56 0.09 -8.52 16 18 C 0.10 0.69 6.12 -5.20 -0.03 0.66 16 19 N -0.29 -2.81 3.17 -63.77 -0.20 -3.01 16 20 C 0.20 1.46 12.57 -90.48 -1.14 0.32 16 21 N -0.49 -4.88 11.09 -12.36 -0.14 -5.02 16 22 C 0.13 1.66 7.96 -156.35 -1.24 0.41 16 23 C 0.62 7.80 8.10 -12.32 -0.10 7.70 16 24 N -0.83 -6.03 8.87 30.53 0.27 -5.76 16 25 O -0.52 -8.52 17.92 5.32 0.10 -8.43 16 26 N -0.22 -3.04 11.06 32.08 0.35 -2.69 16 27 C 0.11 1.48 6.37 -2.53 -0.02 1.46 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.38 9.44 7.67 -40.82 -0.31 9.12 16 30 H 0.02 0.43 7.97 -51.92 -0.41 0.02 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.00 7.91 -51.93 -0.41 0.59 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.14 0.26 8.06 -51.93 -0.42 -0.16 16 37 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.23 0.42 8.06 -52.49 -0.42 0.00 16 39 H 0.41 2.16 8.54 -40.82 -0.35 1.82 16 40 H 0.41 2.09 8.93 -40.82 -0.36 1.72 16 41 H 0.07 0.97 8.04 -51.92 -0.42 0.55 16 42 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -39.59 365.16 -8.17 -47.76 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.61 Total: 4.88 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -3.33 Total: 9.73 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: 0.11 Total: -67.79 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.18 Total: -16.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.59 -8.17 -47.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491804528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.839 kcal (2) G-P(sol) polarization free energy of solvation -39.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds