Wall clock time and date at job start Fri Apr 10 2020 18:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.09000 * 110.88593 * 308.87975 * 11 10 9 13 13 C 1.55157 * 111.00340 * 72.80369 * 11 10 9 14 14 C 1.54323 * 102.94289 * 153.57745 * 13 11 10 15 15 N 1.47024 * 107.27227 * 337.80876 * 14 13 11 16 16 C 1.34774 * 125.65115 * 178.90796 * 15 14 13 17 17 O 1.21280 * 120.00020 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.99778 * 0.03260 * 16 15 14 19 19 N 1.46499 * 109.46917 * 179.97438 * 18 16 15 20 20 C 1.34594 * 125.74439 * 125.00519 * 19 18 16 21 21 N 1.30867 * 107.62510 * 179.97438 * 20 19 18 22 22 C 1.34554 * 107.27056 * 359.97438 * 21 20 19 23 23 C 1.47872 * 126.04942 * 179.97438 * 22 21 20 24 24 N 1.34770 * 120.00046 * 359.97438 * 23 22 21 25 25 O 1.21557 * 119.99879 * 179.97438 * 23 22 21 26 26 N 1.28851 * 125.75506 * 304.69674 * 19 18 16 27 27 C 1.47426 * 108.70092 * 358.93896 * 15 14 13 28 28 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 30 30 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 32 32 H 1.08998 * 110.71991 * 271.94019 * 13 11 10 33 33 H 1.08998 * 110.72043 * 35.21511 * 13 11 10 34 34 H 1.08998 * 109.88593 * 218.38999 * 14 13 11 35 35 H 1.09001 * 109.88477 * 97.22441 * 14 13 11 36 36 H 1.09001 * 109.47551 * 300.00302 * 18 16 15 37 37 H 1.09000 * 109.47097 * 60.00714 * 18 16 15 38 38 H 1.07993 * 126.18876 * 359.93964 * 20 19 18 39 39 H 0.97003 * 119.99922 * 359.97438 * 24 23 22 40 40 H 0.97006 * 120.00277 * 179.97438 * 24 23 22 41 41 H 1.09010 * 110.37044 * 265.29373 * 27 15 14 42 42 H 1.09000 * 110.46344 * 143.01450 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3250 -4.7034 0.7823 13 6 0.3773 -4.9577 -1.3954 14 6 0.0016 -6.4536 -1.4474 15 7 0.8817 -7.1578 -0.5034 16 6 0.8550 -8.4795 -0.2411 17 8 1.6314 -8.9544 0.5606 18 6 -0.1394 -9.3672 -0.9439 19 7 0.0334 -10.7493 -0.4898 20 6 -0.9295 -11.5316 0.0321 21 7 -0.3896 -12.6900 0.3135 22 6 0.9080 -12.6215 -0.0359 23 6 1.9053 -13.7042 0.1044 24 7 1.5408 -14.8929 0.6244 25 8 3.0540 -13.5220 -0.2493 26 7 1.1314 -11.4225 -0.5277 27 6 1.7978 -6.1786 0.1092 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6849 -3.7105 -0.8952 31 1 2.6843 -3.7187 0.8848 32 1 -0.5151 -4.3340 -1.4473 33 1 1.0719 -4.7065 -2.1970 34 1 0.1546 -6.8395 -2.4553 35 1 -1.0394 -6.5849 -1.1521 36 1 -1.1511 -9.0327 -0.7143 37 1 0.0248 -9.3158 -2.0203 38 1 -1.9609 -11.2536 0.1904 39 1 0.6243 -15.0382 0.9069 40 1 2.1950 -15.6033 0.7161 41 1 2.7415 -6.1493 -0.4357 42 1 1.9728 -6.4239 1.1567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491804528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:16 Heat of formation + Delta-G solvation = 11.552088 kcal Electronic energy + Delta-G solvation = -26059.576026 eV Core-core repulsion = 22076.027687 eV Total energy + Delta-G solvation = -3983.548339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.50979 -41.20719 -40.31639 -38.94578 -36.47052 -35.67414 -34.64570 -33.98191 -32.86992 -31.96899 -30.41218 -29.52082 -27.06662 -25.63714 -24.51494 -23.88754 -23.31586 -21.77086 -21.41413 -20.53757 -19.29317 -19.17497 -18.55986 -18.17613 -17.68591 -17.40113 -17.12030 -16.62912 -16.28275 -16.01657 -15.72229 -15.44229 -15.30656 -15.08311 -14.92317 -14.79599 -14.19694 -13.98058 -13.83587 -13.59284 -13.01276 -12.96745 -12.94131 -12.73468 -12.25982 -12.11961 -11.80600 -11.69770 -11.68256 -11.63731 -11.59378 -11.54968 -11.21494 -10.92080 -10.87113 -10.53559 -9.76144 -8.99070 -7.95298 -5.23178 0.28701 0.96539 1.15173 1.38992 1.48712 1.50482 1.56630 1.83651 2.22601 2.31204 2.56322 3.10166 3.22882 3.38396 3.54085 3.63906 3.64298 3.88246 3.89674 4.03886 4.12034 4.28919 4.32526 4.44867 4.55672 4.62479 4.79897 4.81708 4.84763 4.98747 5.07372 5.19989 5.23225 5.27970 5.41345 5.50579 5.53337 5.73798 6.19930 6.27423 6.37087 6.91166 6.97896 7.16868 7.34982 8.09232 8.34361 9.27544 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038993 B = 0.001921 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.908333 B =14571.617777 C =15008.276787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.970 3.030 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.249 4.249 8 H 0.071 0.929 9 N -0.739 5.739 10 C 0.162 3.838 11 C -0.095 4.095 12 H 0.080 0.920 13 C -0.120 4.120 14 C 0.098 3.902 15 N -0.609 5.609 16 C 0.508 3.492 17 O -0.576 6.576 18 C 0.107 3.893 19 N -0.294 5.294 20 C 0.215 3.785 21 N -0.497 5.497 22 C 0.109 3.891 23 C 0.617 3.383 24 N -0.805 5.805 25 O -0.573 6.573 26 N -0.269 5.269 27 C 0.120 3.880 28 H 0.252 0.748 29 H 0.378 0.622 30 H 0.025 0.975 31 H 0.013 0.987 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.201 0.799 37 H 0.158 0.842 38 H 0.287 0.713 39 H 0.423 0.577 40 H 0.421 0.579 41 H 0.067 0.933 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -26.534 -3.980 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.035 3.965 11 C -0.115 4.115 12 H 0.099 0.901 13 C -0.157 4.157 14 C -0.023 4.023 15 N -0.343 5.343 16 C 0.296 3.704 17 O -0.455 6.455 18 C -0.016 4.016 19 N -0.089 5.089 20 C -0.079 4.079 21 N -0.223 5.223 22 C -0.170 4.170 23 C 0.397 3.603 24 N -0.371 5.371 25 O -0.449 6.449 26 N -0.108 5.108 27 C -0.004 4.004 28 H 0.061 0.939 29 H 0.210 0.790 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.218 0.782 37 H 0.175 0.825 38 H 0.302 0.698 39 H 0.255 0.745 40 H 0.256 0.744 41 H 0.085 0.915 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.319 -26.597 -3.914 28.141 hybrid contribution 0.231 1.235 0.470 1.341 sum -8.088 -25.362 -3.444 26.842 Atomic orbital electron populations 1.69777 1.06325 1.26156 1.59225 1.25485 0.96419 1.00802 1.03589 0.85271 0.77285 0.79492 0.78048 1.20467 1.21967 1.20819 1.19557 0.91427 0.85488 1.41579 0.91071 1.42421 1.05682 1.00709 1.89412 1.20657 0.93538 0.84608 0.97658 1.22330 0.97626 0.92163 0.99353 0.90122 1.22621 1.01676 0.95591 0.95860 1.22472 0.95091 0.91092 0.93679 1.48500 1.36797 1.05817 1.43182 1.20699 0.85325 0.81671 0.82743 1.90838 1.43134 1.74125 1.37360 1.22345 1.03235 0.73386 1.02588 1.47157 1.05625 1.13012 1.43132 1.27656 0.99585 0.85369 0.95308 1.71187 1.04952 1.23441 1.22736 1.23673 0.92826 0.93683 1.06863 1.16513 0.84537 0.82079 0.77124 1.43221 1.17346 1.12835 1.63663 1.90858 1.20534 1.82025 1.51488 1.74361 1.11335 1.05529 1.19618 1.22046 0.93080 0.86878 0.98379 0.93923 0.78989 0.95716 0.96900 0.89526 0.90932 0.87947 0.87235 0.78202 0.82497 0.69787 0.74481 0.74444 0.91468 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.58 13.06 21.65 0.28 -56.30 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 3 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.25 -13.51 9.99 84.03 0.84 -12.67 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.74 -35.41 5.55 -343.44 -1.91 -37.31 16 10 C 0.16 6.05 5.71 86.38 0.49 6.55 16 11 C -0.10 -2.61 3.05 -9.40 -0.03 -2.64 16 12 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 13 C -0.12 -2.52 6.37 31.78 0.20 -2.31 16 14 C 0.10 1.16 6.49 86.73 0.56 1.72 16 15 N -0.61 -11.76 3.33 -811.78 -2.70 -14.46 16 16 C 0.51 10.72 7.86 87.66 0.69 11.41 16 17 O -0.58 -19.54 15.94 -3.03 -0.05 -19.58 16 18 C 0.11 0.93 6.12 85.63 0.52 1.46 16 19 N -0.29 -4.89 3.17 -355.66 -1.13 -6.02 16 20 C 0.22 2.37 12.57 180.30 2.27 4.63 16 21 N -0.50 -8.98 11.09 -193.03 -2.14 -11.12 16 22 C 0.11 2.77 7.96 137.13 1.09 3.86 16 23 C 0.62 15.86 8.10 86.80 0.70 16.56 16 24 N -0.80 -11.31 8.87 -175.59 -1.56 -12.87 16 25 O -0.57 -19.94 17.92 -3.90 -0.07 -20.01 16 26 N -0.27 -7.44 11.06 -52.43 -0.58 -8.02 16 27 C 0.12 3.07 6.37 86.86 0.55 3.63 16 28 H 0.25 14.39 8.31 -92.71 -0.77 13.61 16 29 H 0.38 18.78 7.67 -92.71 -0.71 18.07 16 30 H 0.02 0.93 7.97 -2.38 -0.02 0.91 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.66 7.91 -2.39 -0.02 1.64 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.20 -0.73 8.06 -2.39 -0.02 -0.75 16 37 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.29 -0.82 8.06 -2.91 -0.02 -0.84 16 39 H 0.42 3.97 8.54 -92.71 -0.79 3.17 16 40 H 0.42 4.09 8.93 -92.70 -0.83 3.26 16 41 H 0.07 1.80 8.04 -2.38 -0.02 1.78 16 42 H 0.06 1.81 8.04 -2.39 -0.02 1.79 16 Total: -1.00 -93.15 365.16 -0.70 -93.85 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -1.24 Total: 16.00 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 8.36 Total: 28.74 kcal Atomic # 7 Polarization: -136.37 SS G_CDS: -9.73 Total: -146.10 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.12 Total: -39.60 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -93.15 -0.70 -93.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491804528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.398 kcal (2) G-P(sol) polarization free energy of solvation -93.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds