Wall clock time and date at job start Fri Apr 10 2020 18:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.88434 * 51.11772 * 11 10 9 13 13 C 1.55155 * 111.00412 * 287.19518 * 11 10 9 14 14 C 1.54327 * 102.94065 * 206.41899 * 13 11 10 15 15 N 1.47025 * 107.27126 * 22.19595 * 14 13 11 16 16 C 1.34777 * 125.65018 * 181.09053 * 15 14 13 17 17 O 1.21273 * 120.00178 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99376 * 359.95742 * 16 15 14 19 19 N 1.46507 * 109.46510 * 179.97438 * 18 16 15 20 20 C 1.34587 * 125.74459 * 125.00151 * 19 18 16 21 21 N 1.30875 * 107.62282 * 179.97438 * 20 19 18 22 22 C 1.34554 * 107.26828 * 359.97438 * 21 20 19 23 23 C 1.47871 * 126.04743 * 179.97438 * 22 21 20 24 24 N 1.34781 * 119.99900 * 359.97438 * 23 22 21 25 25 O 1.21555 * 120.00063 * 179.97438 * 23 22 21 26 26 N 1.28853 * 125.74924 * 304.69207 * 19 18 16 27 27 C 1.47425 * 108.70149 * 1.05494 * 15 14 13 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 31 31 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 32 32 H 1.08996 * 110.71895 * 324.78612 * 13 11 10 33 33 H 1.09001 * 110.72006 * 88.05773 * 13 11 10 34 34 H 1.09000 * 109.88574 * 262.77402 * 14 13 11 35 35 H 1.09001 * 110.00464 * 141.68047 * 14 13 11 36 36 H 1.08991 * 109.47628 * 299.99386 * 18 16 15 37 37 H 1.09004 * 109.47361 * 60.00359 * 18 16 15 38 38 H 1.07993 * 126.18884 * 359.94622 * 20 19 18 39 39 H 0.97002 * 119.99703 * 359.97438 * 24 23 22 40 40 H 0.96998 * 119.99975 * 179.97438 * 24 23 22 41 41 H 1.09001 * 110.36548 * 217.02965 * 27 15 14 42 42 H 1.09001 * 110.46206 * 94.75830 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3256 -4.6995 -0.7953 13 6 0.3763 -4.9645 1.3812 14 6 0.0006 -6.4606 1.4255 15 7 0.8814 -7.1602 0.4788 16 6 0.8550 -8.4806 0.2099 17 8 1.6319 -8.9516 -0.5934 18 6 -0.1399 -9.3717 0.9079 19 7 0.0324 -10.7514 0.4461 20 6 0.2509 -11.8220 1.2319 21 7 0.3497 -12.8704 0.4547 22 6 0.1912 -12.4449 -0.8119 23 6 0.2275 -13.2902 -2.0247 24 7 0.4355 -14.6173 -1.9152 25 8 0.0698 -12.7880 -3.1204 26 7 -0.0053 -11.1451 -0.7802 27 6 1.7979 -6.1779 -0.1284 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 2.6853 -3.7142 -0.8912 31 1 2.6841 -3.7150 0.8887 32 1 1.0704 -4.7171 2.1844 33 1 -0.5161 -4.3409 1.4355 34 1 -1.0402 -6.5905 1.1288 35 1 0.1510 -6.8532 2.4312 36 1 0.0236 -9.3256 1.9845 37 1 -1.1515 -9.0361 0.6792 38 1 0.3308 -11.8168 2.3088 39 1 0.5617 -15.0179 -1.0408 40 1 0.4589 -15.1718 -2.7107 41 1 1.9720 -6.4192 -1.1770 42 1 2.7421 -6.1507 0.4156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491804530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:19 Heat of formation + Delta-G solvation = 44.636883 kcal Electronic energy + Delta-G solvation = -26112.734247 eV Core-core repulsion = 22130.620573 eV Total energy + Delta-G solvation = -3982.113674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.84202 -40.36198 -39.40492 -37.97598 -35.06664 -34.96309 -33.87816 -32.66743 -32.09576 -30.39260 -29.58000 -28.52545 -25.46991 -24.57629 -23.36255 -22.77243 -22.55948 -20.99781 -20.30129 -19.78733 -18.60204 -17.94864 -17.48357 -17.30458 -16.70898 -16.59699 -16.41534 -15.69003 -15.27865 -15.09313 -14.55498 -14.35508 -14.30114 -14.01742 -13.80702 -13.55782 -13.30046 -13.02285 -12.73620 -12.63179 -12.29928 -11.94193 -11.15075 -10.95458 -10.91230 -10.83952 -10.75160 -10.69227 -10.61942 -10.51249 -10.38381 -10.06968 -10.01891 -9.81857 -9.23909 -8.95587 -8.93201 -7.07796 -6.16355 -3.16681 1.07054 1.56610 1.70560 2.13830 2.57690 2.96980 3.10189 3.48795 3.52112 3.69517 3.71841 3.81910 3.98385 4.31686 4.35093 4.45833 4.52435 4.62016 4.69612 4.83066 5.06527 5.17522 5.36866 5.55433 5.57166 5.69190 5.76801 5.79020 5.82498 5.86432 5.90948 6.02795 6.11805 6.18813 6.38045 6.55510 6.64744 6.88759 7.12172 7.61782 7.71500 7.75126 7.91220 8.69879 9.15846 10.02229 10.16435 11.32094 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034910 B = 0.001946 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.870580 B =14382.185643 C =14769.358237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.045 4.045 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.742 5.742 10 C 0.170 3.830 11 C -0.107 4.107 12 H 0.085 0.915 13 C -0.121 4.121 14 C 0.092 3.908 15 N -0.612 5.612 16 C 0.514 3.486 17 O -0.511 6.511 18 C 0.105 3.895 19 N -0.289 5.289 20 C 0.196 3.804 21 N -0.485 5.485 22 C 0.129 3.871 23 C 0.624 3.376 24 N -0.834 5.834 25 O -0.518 6.518 26 N -0.216 5.216 27 C 0.115 3.885 28 H 0.254 0.746 29 H 0.367 0.633 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.229 0.771 39 H 0.411 0.589 40 H 0.410 0.590 41 H 0.080 0.920 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 -27.061 8.202 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.464 4.464 8 H 0.083 0.917 9 N -0.388 5.388 10 C 0.042 3.958 11 C -0.127 4.127 12 H 0.104 0.896 13 C -0.159 4.159 14 C -0.030 4.030 15 N -0.347 5.347 16 C 0.299 3.701 17 O -0.385 6.385 18 C -0.020 4.020 19 N -0.085 5.085 20 C -0.100 4.100 21 N -0.210 5.210 22 C -0.150 4.150 23 C 0.404 3.596 24 N -0.400 5.400 25 O -0.389 6.389 26 N -0.055 5.055 27 C -0.007 4.007 28 H 0.065 0.935 29 H 0.200 0.800 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.158 0.842 37 H 0.148 0.852 38 H 0.245 0.755 39 H 0.240 0.760 40 H 0.243 0.757 41 H 0.099 0.901 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.006 -25.207 6.612 26.137 hybrid contribution -0.012 -1.859 0.637 1.966 sum -2.018 -27.067 7.249 28.093 Atomic orbital electron populations 1.70903 1.06026 1.28318 1.53598 1.25793 0.97051 1.01032 1.00330 0.83237 0.74229 0.75546 0.75904 1.21001 1.22244 1.22222 1.20024 0.92076 0.85745 1.48552 0.91720 1.42299 1.04833 1.00786 1.90833 1.20478 0.92597 0.84324 0.98397 1.22609 0.98741 0.93801 0.97529 0.89621 1.22657 1.02208 0.92777 0.98220 1.22276 0.94087 0.94199 0.92453 1.48453 1.37005 1.06061 1.43215 1.19782 0.85181 0.81651 0.83479 1.90855 1.40537 1.73381 1.33727 1.21893 1.02336 0.76672 1.01114 1.46931 1.48554 1.09072 1.03942 1.26499 1.01427 0.81583 1.00467 1.71204 1.20498 1.28912 1.00432 1.23612 1.09034 0.89383 0.92968 1.16235 0.76341 0.81856 0.85149 1.43416 1.75435 1.07445 1.13683 1.90905 1.48487 1.73279 1.26231 1.74466 1.16385 1.13192 1.01464 1.22298 0.92560 0.86510 0.99310 0.93484 0.79990 0.95855 0.95813 0.89982 0.89452 0.91062 0.91061 0.84171 0.85213 0.75511 0.75964 0.75743 0.90107 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.46 13.70 55.49 0.76 -27.70 16 2 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 3 Si 1.08 25.46 29.92 -169.99 -5.09 20.37 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.33 -9.19 9.99 -15.06 -0.15 -9.34 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.74 -17.77 5.55 -59.91 -0.33 -18.10 16 10 C 0.17 3.18 5.71 -4.05 -0.02 3.16 16 11 C -0.11 -1.52 3.05 -88.47 -0.27 -1.79 16 12 H 0.09 1.30 8.14 -51.92 -0.42 0.88 16 13 C -0.12 -1.38 6.37 -24.90 -0.16 -1.54 16 14 C 0.09 0.74 6.49 -3.06 -0.02 0.72 16 15 N -0.61 -6.58 3.33 -170.52 -0.57 -7.15 16 16 C 0.51 5.93 7.86 -10.98 -0.09 5.84 16 17 O -0.51 -8.56 15.94 5.56 0.09 -8.47 16 18 C 0.10 0.68 6.12 -5.19 -0.03 0.65 16 19 N -0.29 -2.80 3.17 -63.76 -0.20 -3.00 16 20 C 0.20 1.42 12.57 -90.48 -1.14 0.29 16 21 N -0.48 -4.83 11.09 -12.36 -0.14 -4.96 16 22 C 0.13 1.67 7.96 -156.35 -1.24 0.42 16 23 C 0.62 7.84 8.10 -12.32 -0.10 7.74 16 24 N -0.83 -6.05 8.87 30.54 0.27 -5.78 16 25 O -0.52 -8.59 17.92 5.32 0.10 -8.50 16 26 N -0.22 -3.05 11.06 32.07 0.35 -2.70 16 27 C 0.12 1.49 6.38 -2.53 -0.02 1.47 16 28 H 0.25 7.47 6.77 -40.82 -0.28 7.20 16 29 H 0.37 8.87 6.50 -40.82 -0.27 8.61 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.45 7.97 -51.93 -0.41 0.03 16 32 H 0.08 0.98 7.91 -51.93 -0.41 0.56 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.14 0.22 8.06 -51.93 -0.42 -0.20 16 37 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.23 0.36 8.06 -52.49 -0.42 -0.07 16 39 H 0.41 2.15 8.54 -40.82 -0.35 1.80 16 40 H 0.41 2.10 8.93 -40.82 -0.36 1.74 16 41 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 42 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -41.08 363.46 -8.11 -49.19 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.50 Total: 5.06 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -3.33 Total: 6.26 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: 0.15 Total: -69.38 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.18 Total: -16.97 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.09 Total: 20.37 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -41.08 -8.11 -49.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491804530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.827 kcal (2) G-P(sol) polarization free energy of solvation -41.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds