Wall clock time and date at job start Fri Apr 10 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09011 * 110.88136 * 54.30037 * 11 10 9 13 13 C 1.55153 * 111.01013 * 178.17855 * 11 10 9 14 14 C 1.54368 * 102.92223 * 153.54913 * 13 11 10 15 15 N 1.47023 * 107.28806 * 337.86602 * 14 13 11 16 16 C 1.34779 * 125.64916 * 178.94496 * 15 14 13 17 17 O 1.21587 * 119.99938 * 179.97438 * 16 15 14 18 18 C 1.47524 * 119.99892 * 359.95325 * 16 15 14 19 19 C 1.36597 * 125.77075 * 179.71466 * 18 16 15 20 20 N 1.34809 * 106.83860 * 179.90281 * 19 18 16 21 21 C 1.46503 * 126.59288 * 180.11340 * 20 19 18 22 22 C 1.50699 * 109.47218 * 125.27159 * 21 20 19 23 23 N 1.34777 * 119.99978 * 179.97438 * 22 21 20 24 24 O 1.21286 * 120.00055 * 0.02562 * 22 21 20 25 25 N 1.40215 * 106.81304 * 0.35723 * 20 19 18 26 26 N 1.28760 * 108.36537 * 359.77478 * 25 20 19 27 27 C 1.47423 * 108.70195 * 358.90529 * 15 14 13 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 31 31 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 32 32 H 1.09002 * 110.72499 * 271.94833 * 13 11 10 33 33 H 1.09009 * 110.71673 * 35.21940 * 13 11 10 34 34 H 1.09003 * 109.90485 * 218.42701 * 14 13 11 35 35 H 1.08997 * 109.97687 * 97.34392 * 14 13 11 36 36 H 1.08004 * 126.57975 * 0.04364 * 19 18 16 37 37 H 1.08999 * 109.46975 * 245.27212 * 21 20 19 38 38 H 1.08994 * 109.47135 * 5.27046 * 21 20 19 39 39 H 0.96994 * 119.99878 * 0.02562 * 23 22 21 40 40 H 0.96997 * 119.99924 * 179.97438 * 23 22 21 41 41 H 1.08997 * 110.36616 * 265.28782 * 27 15 14 42 42 H 1.09004 * 110.45952 * 143.01626 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3595 -4.7291 -0.8257 13 6 1.8030 -6.1832 -0.0448 14 6 0.7998 -7.1425 0.6307 15 7 -0.0947 -6.3243 1.4626 16 6 -1.1231 -6.7874 2.2005 17 8 -1.7988 -6.0157 2.8534 18 6 -1.4292 -8.2304 2.2156 19 6 -2.4352 -8.8259 2.9221 20 7 -2.3694 -10.1462 2.6579 21 6 -3.2507 -11.1884 3.1903 22 6 -3.8524 -11.9685 2.0499 23 7 -4.7010 -12.9847 2.3022 24 8 -3.5722 -11.6824 0.9050 25 7 -1.2919 -10.3310 1.7799 26 7 -0.7616 -9.1822 1.5411 27 6 0.3202 -4.9136 1.3567 28 1 -0.4850 0.8401 0.0004 29 1 0.3557 -2.3880 0.0005 30 1 2.6849 -3.7145 -0.8894 31 1 2.6848 -3.7144 0.8905 32 1 1.9922 -6.4848 -1.0751 33 1 2.7332 -6.1370 0.5216 34 1 1.3341 -7.8589 1.2547 35 1 0.2212 -7.6704 -0.1273 36 1 -3.1480 -8.3332 3.5668 37 1 -2.6752 -11.8607 3.8267 38 1 -4.0467 -10.7273 3.7750 39 1 -4.9247 -13.2137 3.2178 40 1 -5.0885 -13.4865 1.5682 41 1 0.9901 -4.6527 2.1759 42 1 -0.5515 -4.2591 1.3572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491855246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:21 Heat of formation + Delta-G solvation = 51.183765 kcal Electronic energy + Delta-G solvation = -26294.501510 eV Core-core repulsion = 22312.671729 eV Total energy + Delta-G solvation = -3981.829780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.45605 -40.08480 -39.56203 -37.42844 -34.99993 -34.53814 -34.36735 -32.20141 -31.15038 -30.30123 -29.15899 -28.36697 -25.66287 -23.94201 -23.21456 -22.56360 -21.83693 -21.38522 -20.02425 -19.63836 -18.40531 -17.86848 -17.30972 -16.87282 -16.49536 -16.21730 -16.05715 -15.52420 -15.17376 -14.79522 -14.60755 -14.37042 -14.16852 -13.52846 -13.43054 -13.27122 -13.08874 -12.66961 -12.45521 -12.24099 -12.09177 -11.67910 -11.37402 -11.15119 -11.11084 -10.78001 -10.53641 -10.48976 -10.46603 -10.41846 -10.28265 -10.02291 -9.94032 -9.60206 -9.46656 -8.80551 -8.40245 -6.85231 -5.68753 -2.97863 0.86122 1.53132 1.66455 1.82962 2.66792 3.07804 3.33408 3.49775 3.53645 3.55084 3.80526 3.97658 4.07211 4.19428 4.41785 4.64604 4.72061 4.87729 4.99635 5.02720 5.20000 5.46811 5.56251 5.66811 5.73641 5.89366 5.96008 6.04010 6.06181 6.11745 6.19222 6.23568 6.38856 6.48778 6.51217 6.56990 6.79311 6.93213 7.47987 7.63201 7.76114 7.76507 8.24394 8.49689 9.60653 10.18524 10.53008 11.53921 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032261 B = 0.002130 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.719589 B =13143.228710 C =13572.023371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.292 1.292 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.106 4.106 12 H 0.085 0.915 13 C -0.127 4.127 14 C 0.110 3.890 15 N -0.602 5.602 16 C 0.613 3.387 17 O -0.539 6.539 18 C -0.088 4.088 19 C 0.092 3.908 20 N -0.360 5.360 21 C 0.104 3.896 22 C 0.504 3.496 23 N -0.850 5.850 24 O -0.507 6.507 25 N -0.038 5.038 26 N -0.200 5.200 27 C 0.117 3.883 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.025 0.975 31 H 0.022 0.978 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.207 0.793 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.404 0.596 40 H 0.410 0.590 41 H 0.074 0.926 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 -30.431 9.554 33.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.165 4.165 14 C -0.013 4.013 15 N -0.334 5.334 16 C 0.399 3.601 17 O -0.416 6.416 18 C -0.227 4.227 19 C -0.063 4.063 20 N -0.145 5.145 21 C -0.021 4.021 22 C 0.285 3.715 23 N -0.416 5.416 24 O -0.379 6.379 25 N -0.019 5.019 26 N -0.075 5.075 27 C -0.004 4.004 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.223 0.777 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.232 0.768 40 H 0.242 0.758 41 H 0.092 0.908 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.168 -30.610 8.470 32.793 hybrid contribution -0.907 1.046 0.806 1.602 sum -9.075 -29.563 9.276 32.286 Atomic orbital electron populations 1.69658 1.05083 1.25730 1.57621 1.24751 0.95519 0.97689 1.03069 0.86260 0.78481 0.83603 0.77784 1.21750 1.21302 1.21329 1.19174 0.90989 0.84169 1.42794 0.91214 1.42372 1.05920 0.99941 1.89516 1.20590 0.92749 0.84758 0.98193 1.22592 0.98189 0.94877 0.96885 0.89670 1.22707 0.98072 0.94445 1.01313 1.22102 0.91589 0.93441 0.94144 1.48306 1.29682 1.09939 1.45461 1.16322 0.79825 0.84428 0.79546 1.90832 1.50190 1.56660 1.43926 1.21431 1.00244 0.95608 1.05367 1.23309 0.99971 0.83212 0.99797 1.49812 1.24407 1.06036 1.34281 1.21702 0.94456 0.90566 0.95423 1.20355 0.79522 0.81161 0.90461 1.43696 1.49201 1.35813 1.12918 1.90922 1.58670 1.66393 1.21953 1.82114 0.96872 1.15971 1.06896 1.74772 1.20665 0.96236 1.15831 1.22377 0.99950 0.80345 0.97747 0.93474 0.78191 0.95760 0.95993 0.89974 0.90412 0.91048 0.90875 0.77676 0.85271 0.84613 0.76762 0.75840 0.90826 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.94 13.06 55.49 0.72 -28.21 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 4 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.91 5.49 -59.91 -0.33 -19.24 16 10 C 0.17 3.33 5.71 -4.04 -0.02 3.31 16 11 C -0.11 -1.77 3.07 -88.47 -0.27 -2.05 16 12 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16 13 C -0.13 -1.67 6.42 -24.87 -0.16 -1.83 16 14 C 0.11 1.50 5.52 -3.04 -0.02 1.49 16 15 N -0.60 -9.72 3.33 -171.72 -0.57 -10.29 16 16 C 0.61 10.13 7.85 -12.47 -0.10 10.04 16 17 O -0.54 -10.28 17.12 5.29 0.09 -10.19 16 18 C -0.09 -1.22 6.85 -83.55 -0.57 -1.79 16 19 C 0.09 0.91 11.27 -16.84 -0.19 0.72 16 20 N -0.36 -3.24 3.41 -62.24 -0.21 -3.45 16 21 C 0.10 0.34 7.02 -5.19 -0.04 0.30 16 22 C 0.50 2.92 8.14 -10.99 -0.09 2.83 16 23 N -0.85 -1.09 8.87 31.22 0.28 -0.81 16 24 O -0.51 -6.16 16.57 5.55 0.09 -6.07 16 25 N -0.04 -0.50 12.89 60.35 0.78 0.28 16 26 N -0.20 -2.84 9.77 32.85 0.32 -2.52 16 27 C 0.12 2.07 6.23 -2.53 -0.02 2.06 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.38 10.50 7.63 -40.82 -0.31 10.18 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.45 8.03 -51.93 -0.42 0.03 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.96 8.04 -51.92 -0.42 0.54 16 34 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16 35 H 0.07 1.01 7.61 -51.93 -0.40 0.61 16 36 H 0.21 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.14 -0.13 8.08 -51.93 -0.42 -0.55 16 39 H 0.40 -1.03 8.83 -40.82 -0.36 -1.39 16 40 H 0.41 0.54 8.93 -40.82 -0.36 0.17 16 41 H 0.07 1.33 7.96 -51.93 -0.41 0.91 16 42 H 0.08 1.71 8.04 -51.93 -0.42 1.29 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -41.00 362.59 -5.69 -46.68 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.58 Total: 2.94 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.72 Total: 7.55 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: 0.99 Total: -64.25 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.18 Total: -16.26 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -41.00 -5.69 -46.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491855246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.868 kcal (2) G-P(sol) polarization free energy of solvation -40.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds