Wall clock time and date at job start Fri Apr 10 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09011 * 110.88136 * 54.30037 * 11 10 9 13 13 C 1.55153 * 111.01013 * 178.17855 * 11 10 9 14 14 C 1.54368 * 102.92223 * 153.54913 * 13 11 10 15 15 N 1.47023 * 107.28806 * 337.86602 * 14 13 11 16 16 C 1.34779 * 125.64916 * 178.94496 * 15 14 13 17 17 O 1.21587 * 119.99938 * 179.97438 * 16 15 14 18 18 C 1.47524 * 119.99892 * 359.95325 * 16 15 14 19 19 C 1.36597 * 125.77075 * 179.71466 * 18 16 15 20 20 N 1.34809 * 106.83860 * 179.90281 * 19 18 16 21 21 C 1.46503 * 126.59288 * 180.11340 * 20 19 18 22 22 C 1.50699 * 109.47218 * 125.27159 * 21 20 19 23 23 N 1.34777 * 119.99978 * 179.97438 * 22 21 20 24 24 O 1.21286 * 120.00055 * 0.02562 * 22 21 20 25 25 N 1.40215 * 106.81304 * 0.35723 * 20 19 18 26 26 N 1.28760 * 108.36537 * 359.77478 * 25 20 19 27 27 C 1.47423 * 108.70195 * 358.90529 * 15 14 13 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 31 31 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 32 32 H 1.09002 * 110.72499 * 271.94833 * 13 11 10 33 33 H 1.09009 * 110.71673 * 35.21940 * 13 11 10 34 34 H 1.09003 * 109.90485 * 218.42701 * 14 13 11 35 35 H 1.08997 * 109.97687 * 97.34392 * 14 13 11 36 36 H 1.08004 * 126.57975 * 0.04364 * 19 18 16 37 37 H 1.08999 * 109.46975 * 245.27212 * 21 20 19 38 38 H 1.08994 * 109.47135 * 5.27046 * 21 20 19 39 39 H 0.96994 * 119.99878 * 0.02562 * 23 22 21 40 40 H 0.96997 * 119.99924 * 179.97438 * 23 22 21 41 41 H 1.08997 * 110.36616 * 265.28782 * 27 15 14 42 42 H 1.09004 * 110.45952 * 143.01626 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3595 -4.7291 -0.8257 13 6 1.8030 -6.1832 -0.0448 14 6 0.7998 -7.1425 0.6307 15 7 -0.0947 -6.3243 1.4626 16 6 -1.1231 -6.7874 2.2005 17 8 -1.7988 -6.0157 2.8534 18 6 -1.4292 -8.2304 2.2156 19 6 -2.4352 -8.8259 2.9221 20 7 -2.3694 -10.1462 2.6579 21 6 -3.2507 -11.1884 3.1903 22 6 -3.8524 -11.9685 2.0499 23 7 -4.7010 -12.9847 2.3022 24 8 -3.5722 -11.6824 0.9050 25 7 -1.2919 -10.3310 1.7799 26 7 -0.7616 -9.1822 1.5411 27 6 0.3202 -4.9136 1.3567 28 1 -0.4850 0.8401 0.0004 29 1 0.3557 -2.3880 0.0005 30 1 2.6849 -3.7145 -0.8894 31 1 2.6848 -3.7144 0.8905 32 1 1.9922 -6.4848 -1.0751 33 1 2.7332 -6.1370 0.5216 34 1 1.3341 -7.8589 1.2547 35 1 0.2212 -7.6704 -0.1273 36 1 -3.1480 -8.3332 3.5668 37 1 -2.6752 -11.8607 3.8267 38 1 -4.0467 -10.7273 3.7750 39 1 -4.9247 -13.2137 3.2178 40 1 -5.0885 -13.4865 1.5682 41 1 0.9901 -4.6527 2.1759 42 1 -0.5515 -4.2591 1.3572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491855246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:21 Heat of formation + Delta-G solvation = 15.588712 kcal Electronic energy + Delta-G solvation = -26296.045027 eV Core-core repulsion = 22312.671729 eV Total energy + Delta-G solvation = -3983.373298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.29565 -40.96327 -40.43881 -38.78909 -36.43862 -35.62302 -34.76537 -33.91072 -32.29631 -31.75847 -30.10934 -29.44967 -27.24708 -25.51082 -24.16810 -23.70900 -23.15874 -21.98220 -21.38463 -20.66465 -19.30446 -18.87597 -18.30213 -17.93614 -17.44759 -17.15400 -16.99443 -16.59262 -16.21545 -16.14054 -15.67729 -15.52884 -15.22640 -15.09281 -14.78966 -14.59978 -14.12193 -13.89179 -13.74989 -13.50740 -13.18080 -13.07460 -12.94916 -12.68541 -12.40001 -12.19501 -12.08505 -11.84166 -11.82721 -11.59431 -11.55627 -11.28150 -11.05266 -10.90282 -10.74122 -10.39635 -9.69006 -8.97272 -7.91698 -5.21137 0.08526 0.61987 0.96150 1.45631 1.48624 1.52554 1.58487 1.88490 2.16836 2.36445 2.58536 3.06789 3.39158 3.42069 3.55989 3.67564 3.74939 3.88683 3.91149 3.95315 4.08981 4.20958 4.33406 4.34515 4.48403 4.59760 4.64089 4.74390 4.87576 4.94052 5.02027 5.10259 5.21273 5.28515 5.30708 5.44305 5.52777 5.81038 6.29703 6.35921 6.40644 6.79771 7.04333 7.24188 7.35701 8.11952 8.34308 9.31849 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032261 B = 0.002130 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.719589 B =13143.228710 C =13572.023371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.977 3.023 4 H -0.297 1.297 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.748 5.748 10 C 0.165 3.835 11 C -0.097 4.097 12 H 0.075 0.925 13 C -0.113 4.113 14 C 0.116 3.884 15 N -0.606 5.606 16 C 0.609 3.391 17 O -0.575 6.575 18 C -0.123 4.123 19 C 0.117 3.883 20 N -0.345 5.345 21 C 0.094 3.906 22 C 0.499 3.501 23 N -0.825 5.825 24 O -0.582 6.582 25 N -0.066 5.066 26 N -0.219 5.219 27 C 0.123 3.877 28 H 0.250 0.750 29 H 0.372 0.628 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.244 0.756 37 H 0.167 0.833 38 H 0.189 0.811 39 H 0.425 0.575 40 H 0.411 0.589 41 H 0.067 0.933 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 -32.546 10.916 35.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.224 1.224 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.390 5.390 10 C 0.039 3.961 11 C -0.116 4.116 12 H 0.093 0.907 13 C -0.151 4.151 14 C -0.006 4.006 15 N -0.337 5.337 16 C 0.397 3.603 17 O -0.455 6.455 18 C -0.262 4.262 19 C -0.040 4.040 20 N -0.130 5.130 21 C -0.029 4.029 22 C 0.283 3.717 23 N -0.391 5.391 24 O -0.460 6.460 25 N -0.047 5.047 26 N -0.094 5.094 27 C 0.000 4.000 28 H 0.059 0.941 29 H 0.204 0.796 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.260 0.740 37 H 0.185 0.815 38 H 0.206 0.794 39 H 0.258 0.742 40 H 0.243 0.757 41 H 0.085 0.915 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.900 -32.851 9.871 35.200 hybrid contribution -1.090 1.502 0.472 1.915 sum -8.990 -31.350 10.343 34.214 Atomic orbital electron populations 1.69838 1.06754 1.26089 1.59605 1.25633 0.96402 1.01343 1.03843 0.85163 0.77102 0.78948 0.78251 1.22384 1.20319 1.20199 1.19641 0.91639 0.85275 1.41042 0.90237 1.42620 1.05620 1.01343 1.89460 1.20746 0.93207 0.83594 0.98578 1.22409 0.97619 0.95790 0.95819 0.90690 1.22713 0.97925 0.91407 1.03029 1.22168 0.91236 0.93298 0.93926 1.48391 1.30187 1.09369 1.45797 1.16753 0.79206 0.85610 0.78736 1.90792 1.51348 1.57933 1.45447 1.21239 1.02675 0.94216 1.08036 1.23816 0.98645 0.83286 0.98233 1.50099 1.23547 1.06874 1.32501 1.22411 0.95492 0.90206 0.94753 1.20820 0.79362 0.81566 0.89997 1.43554 1.47172 1.33981 1.14405 1.90907 1.61572 1.68744 1.24817 1.82008 0.98594 1.15621 1.08442 1.74718 1.21600 0.96571 1.16489 1.22139 0.98513 0.81148 0.98186 0.94106 0.79640 0.94723 0.95344 0.87666 0.88872 0.89918 0.90967 0.74006 0.81541 0.79432 0.74195 0.75672 0.91451 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.88 13.06 21.65 0.28 -61.60 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 3 Si 0.98 47.42 29.55 68.60 2.03 49.44 16 4 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.24 -13.98 9.99 84.03 0.84 -13.14 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.75 -39.25 5.49 -343.47 -1.89 -41.14 16 10 C 0.17 6.61 5.71 86.38 0.49 7.10 16 11 C -0.10 -3.25 3.07 -9.40 -0.03 -3.28 16 12 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 13 C -0.11 -2.78 6.42 31.80 0.20 -2.57 16 14 C 0.12 3.09 5.52 86.74 0.48 3.57 16 15 N -0.61 -19.98 3.33 -815.47 -2.71 -22.69 16 16 C 0.61 20.59 7.85 86.69 0.68 21.27 16 17 O -0.58 -22.64 17.12 -3.99 -0.07 -22.71 16 18 C -0.12 -3.35 6.85 40.82 0.28 -3.07 16 19 C 0.12 2.07 11.27 83.85 0.95 3.01 16 20 N -0.35 -5.41 3.41 -350.83 -1.20 -6.61 16 21 C 0.09 0.24 7.02 85.63 0.60 0.84 16 22 C 0.50 4.72 8.14 87.66 0.71 5.43 16 23 N -0.83 0.16 8.87 -173.53 -1.54 -1.38 16 24 O -0.58 -14.03 16.57 -3.05 -0.05 -14.08 16 25 N -0.07 -1.68 12.89 37.02 0.48 -1.20 16 26 N -0.22 -6.19 9.77 -49.99 -0.49 -6.67 16 27 C 0.12 4.50 6.23 86.85 0.54 5.04 16 28 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.37 21.12 7.63 -92.71 -0.71 20.41 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.03 1.12 8.03 -2.39 -0.02 1.10 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.06 8.04 -2.38 -0.02 2.04 16 34 H 0.08 2.05 7.73 -2.39 -0.02 2.03 16 35 H 0.07 1.97 7.61 -2.39 -0.02 1.95 16 36 H 0.24 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.17 -0.72 8.14 -2.39 -0.02 -0.74 16 38 H 0.19 -1.46 8.08 -2.39 -0.02 -1.48 16 39 H 0.43 -3.81 8.83 -92.71 -0.82 -4.63 16 40 H 0.41 0.28 8.93 -92.71 -0.83 -0.54 16 41 H 0.07 2.52 7.96 -2.39 -0.02 2.50 16 42 H 0.05 2.22 8.04 -2.38 -0.02 2.20 16 Total: -1.00 -94.58 362.59 -0.20 -94.79 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -1.26 Total: 13.95 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 6.21 Total: 19.90 kcal Atomic # 7 Polarization: -134.23 SS G_CDS: -7.06 Total: -141.30 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.12 Total: -36.79 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -94.58 -0.20 -94.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491855246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.375 kcal (2) G-P(sol) polarization free energy of solvation -94.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds