Wall clock time and date at job start Fri Apr 10 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48494 * 109.47268 * 269.99547 * 3 2 1 5 5 H 1.48501 * 109.47131 * 30.00127 * 3 2 1 6 6 H 1.48508 * 109.46878 * 149.99451 * 3 2 1 7 7 C 1.38946 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00298 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99855 * 180.02562 * 7 2 1 10 10 C 1.34780 * 120.00047 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99765 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00245 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47593 * 181.34023 * 12 10 9 14 14 C 1.46905 * 111.00546 * 162.31762 * 13 12 10 15 15 C 1.52995 * 109.47292 * 190.00115 * 14 13 12 16 16 N 1.46494 * 109.47156 * 180.02562 * 15 14 13 17 17 C 1.34781 * 120.00197 * 180.02562 * 16 15 14 18 18 O 1.21552 * 119.99740 * 359.97438 * 17 16 15 19 19 C 1.47869 * 119.99955 * 179.97438 * 17 16 15 20 20 N 1.34552 * 126.04601 * 179.97438 * 19 17 16 21 21 C 1.30873 * 107.26713 * 180.02562 * 20 19 17 22 22 N 1.34581 * 107.62400 * 0.02562 * 21 20 19 23 23 H 0.97004 * 125.74622 * 180.02562 * 22 21 20 24 24 N 1.28847 * 108.50704 * 359.72684 * 22 21 20 25 25 C 1.46903 * 110.99939 * 286.27519 * 13 12 10 26 26 C 1.52992 * 117.49794 * 3.74523 * 25 13 12 27 27 C 1.52998 * 117.49794 * 295.11961 * 25 13 12 28 28 H 0.97004 * 120.00450 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00654 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47318 * 61.34104 * 12 10 9 31 31 H 1.09008 * 109.47451 * 301.34417 * 12 10 9 32 32 H 1.08998 * 109.46506 * 70.00156 * 14 13 12 33 33 H 1.08996 * 109.46903 * 310.00194 * 14 13 12 34 34 H 1.09005 * 109.47053 * 300.00067 * 15 14 13 35 35 H 1.09005 * 109.47119 * 59.99877 * 15 14 13 36 36 H 0.96997 * 120.00239 * 359.97438 * 16 15 14 37 37 H 1.08003 * 126.18535 * 179.97438 * 21 20 19 38 38 H 1.09002 * 115.55330 * 149.45423 * 25 13 12 39 39 H 1.08998 * 117.50105 * 359.97438 * 26 25 13 40 40 H 1.09000 * 117.49878 * 145.02525 * 26 25 13 41 41 H 1.08996 * 117.49946 * 214.98179 * 27 25 13 42 42 H 1.08999 * 117.49772 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7002 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4472 -3.4209 0.0011 12 6 5.5606 -2.3705 0.0011 13 7 6.0504 -3.7551 -0.0313 14 6 7.4578 -3.8062 -0.4492 15 6 7.8595 -5.2589 -0.7119 16 7 9.2631 -5.3099 -1.1280 17 6 9.8383 -6.4945 -1.4152 18 8 9.1925 -7.5205 -1.3286 19 6 11.2550 -6.5458 -1.8358 20 7 11.9481 -7.6556 -2.1496 21 6 13.1607 -7.2795 -2.4671 22 7 13.2160 -5.9400 -2.3489 23 1 13.9944 -5.3875 -2.5219 24 7 12.0593 -5.5145 -1.9734 25 6 5.8635 -4.4102 1.2702 26 6 5.1437 -3.6176 2.3631 27 6 6.6519 -3.8571 2.4591 28 1 -0.4851 0.8400 -0.0004 29 1 3.8649 -0.3633 0.0007 30 1 5.9240 -1.8777 0.9028 31 1 5.9241 -1.8360 -0.8767 32 1 8.0861 -3.3924 0.3395 33 1 7.5875 -3.2228 -1.3607 34 1 7.7297 -5.8423 0.1998 35 1 7.2310 -5.6727 -1.5006 36 1 9.7785 -4.4911 -1.1975 37 1 13.9708 -7.9271 -2.7687 38 1 5.6952 -5.4865 1.2350 39 1 4.8092 -2.6099 2.1166 40 1 4.5016 -4.1724 3.0471 41 1 7.0018 -4.5694 3.2061 42 1 7.3095 -3.0074 2.2754 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493426709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:26 Heat of formation + Delta-G solvation = 75.810529 kcal Electronic energy + Delta-G solvation = -26315.905692 eV Core-core repulsion = 22335.143808 eV Total energy + Delta-G solvation = -3980.761884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.93437 -39.91514 -39.36910 -37.45777 -35.40337 -33.89886 -33.87167 -33.33328 -32.01807 -31.61311 -29.59732 -26.81646 -24.91805 -24.04244 -23.48992 -22.87727 -21.91319 -20.80526 -20.05984 -19.33032 -19.11544 -18.09617 -17.68698 -16.98034 -16.81010 -16.29438 -15.89419 -15.43259 -15.23410 -15.02538 -14.69487 -14.20833 -13.96888 -13.67927 -13.51373 -13.22328 -12.72484 -12.67452 -12.40311 -12.22691 -11.89721 -11.64790 -11.28640 -11.19038 -11.11177 -11.03051 -10.97452 -10.58791 -10.50041 -10.47100 -10.22588 -9.95521 -9.92955 -9.50341 -9.27844 -8.58679 -8.13603 -7.98569 -6.27310 -3.78429 0.89943 1.70011 2.10108 2.57221 3.03015 3.07309 3.07868 3.16147 3.67678 3.79197 3.94178 4.02720 4.06680 4.12725 4.44610 4.65984 4.81098 4.99608 5.07668 5.12112 5.15752 5.25124 5.37704 5.46319 5.52652 5.66542 5.73426 5.75472 5.83133 5.90651 5.93937 6.10132 6.17677 6.20629 6.27295 6.41821 7.00442 7.11123 7.17835 7.53003 7.61925 7.90662 8.18281 8.64562 8.99990 9.46367 9.88694 10.86018 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024334 B = 0.002221 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.390570 B =12603.306597 C =13017.257505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.040 3.960 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.301 4.301 8 H 0.120 0.880 9 N -0.596 5.596 10 C 0.456 3.544 11 O -0.547 6.547 12 C 0.036 3.964 13 N -0.479 5.479 14 C 0.047 3.953 15 C 0.125 3.875 16 N -0.711 5.711 17 C 0.612 3.388 18 O -0.504 6.504 19 C 0.155 3.845 20 N -0.461 5.461 21 C 0.197 3.803 22 N -0.399 5.399 23 H 0.452 0.548 24 N -0.278 5.278 25 C 0.040 3.960 26 C -0.166 4.166 27 C -0.227 4.227 28 H 0.272 0.728 29 H 0.368 0.632 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.406 0.594 37 H 0.232 0.768 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.865 -5.564 -2.149 31.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.163 4.163 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.429 4.429 8 H 0.137 0.863 9 N -0.237 5.237 10 C 0.241 3.759 11 O -0.427 6.427 12 C -0.096 4.096 13 N -0.202 5.202 14 C -0.082 4.082 15 C 0.002 3.998 16 N -0.364 5.364 17 C 0.393 3.607 18 O -0.375 6.375 19 C -0.126 4.126 20 N -0.186 5.186 21 C -0.101 4.101 22 N -0.122 5.122 23 H 0.299 0.701 24 N -0.119 5.119 25 C -0.068 4.068 26 C -0.204 4.204 27 C -0.267 4.267 28 H 0.083 0.917 29 H 0.201 0.799 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.240 0.760 37 H 0.248 0.752 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 28.947 -6.986 -2.286 29.866 hybrid contribution 2.178 2.609 0.337 3.415 sum 31.124 -4.377 -1.949 31.491 Atomic orbital electron populations 1.69619 1.05595 1.27358 1.49787 1.25023 0.95470 0.97876 0.97908 0.86690 0.79709 0.84245 0.78808 1.19698 1.20290 1.19628 1.19406 0.79176 0.96564 1.47775 0.86264 1.42212 1.07493 1.06015 1.67985 1.19498 0.87817 0.84654 0.83911 1.90588 1.69030 1.30714 1.52355 1.22043 0.96335 0.89433 1.01755 1.61434 1.15835 1.16007 1.26893 1.22246 0.89225 0.95982 1.00702 1.21352 0.79483 0.97184 1.01752 1.45637 1.13569 1.08420 1.68796 1.16222 0.82337 0.84164 0.77996 1.90873 1.62126 1.33470 1.51008 1.23907 0.97182 0.85397 1.06108 1.71338 1.02420 1.28510 1.16292 1.26789 0.97746 0.84289 1.01261 1.45135 1.10779 1.08544 1.47718 0.70119 1.74250 0.93097 1.26628 1.17950 1.22660 1.03072 0.98549 0.82555 1.23250 0.93306 1.02547 1.01253 1.23476 0.95433 1.04197 1.03564 0.91704 0.79915 0.92636 0.89258 0.93907 0.89994 0.90549 0.89675 0.75952 0.75208 0.85751 0.88023 0.88396 0.88777 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.96 55.50 0.77 -25.07 16 2 C 0.04 1.09 5.50 -17.47 -0.10 0.99 16 3 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.42 10.16 -14.94 -0.15 -8.58 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 9 N -0.60 -13.95 5.09 -10.97 -0.06 -14.01 16 10 C 0.46 10.09 5.84 -10.99 -0.06 10.02 16 11 O -0.55 -14.38 14.79 5.55 0.08 -14.30 16 12 C 0.04 0.58 5.00 -4.98 -0.02 0.55 16 13 N -0.48 -7.27 4.34 -228.09 -0.99 -8.26 16 14 C 0.05 0.52 4.96 -3.82 -0.02 0.50 16 15 C 0.13 1.45 5.67 -4.05 -0.02 1.43 16 16 N -0.71 -7.31 5.55 -61.24 -0.34 -7.65 16 17 C 0.61 7.94 7.83 -12.32 -0.10 7.84 16 18 O -0.50 -8.51 17.09 5.32 0.09 -8.42 16 19 C 0.16 1.72 7.96 -156.35 -1.24 0.48 16 20 N -0.46 -4.92 11.41 -12.36 -0.14 -5.06 16 21 C 0.20 0.94 13.14 -90.48 -1.19 -0.24 16 22 N -0.40 -1.57 6.93 29.56 0.20 -1.37 16 23 H 0.45 -0.27 8.96 -190.21 -1.71 -1.98 16 24 N -0.28 -2.22 11.98 32.07 0.38 -1.84 16 25 C 0.04 0.61 4.55 -67.72 -0.31 0.30 16 26 C -0.17 -2.64 8.48 -26.73 -0.23 -2.87 16 27 C -0.23 -2.83 9.26 -26.73 -0.25 -3.08 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 30 H 0.06 0.80 5.99 -51.93 -0.31 0.49 16 31 H 0.09 1.23 7.77 -51.92 -0.40 0.82 16 32 H 0.04 0.41 6.87 -51.93 -0.36 0.06 16 33 H 0.08 0.80 7.84 -51.93 -0.41 0.40 16 34 H 0.08 0.95 7.30 -51.93 -0.38 0.57 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.41 3.20 8.17 -40.82 -0.33 2.86 16 37 H 0.23 -0.14 8.06 -52.48 -0.42 -0.56 16 38 H 0.12 1.88 8.03 -51.93 -0.42 1.46 16 39 H 0.10 1.81 4.92 -51.93 -0.26 1.55 16 40 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.00 7.15 -51.93 -0.37 0.63 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -38.84 354.92 -9.47 -48.31 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.42 Total: 10.40 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -3.69 Total: 7.35 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -0.16 Total: -63.26 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.17 Total: -22.72 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.84 -9.47 -48.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493426709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.122 kcal (2) G-P(sol) polarization free energy of solvation -38.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds