Wall clock time and date at job start Fri Apr 10 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48494 * 109.47268 * 269.99547 * 3 2 1 5 5 H 1.48501 * 109.47131 * 30.00127 * 3 2 1 6 6 H 1.48508 * 109.46878 * 149.99451 * 3 2 1 7 7 C 1.38946 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00298 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99855 * 180.02562 * 7 2 1 10 10 C 1.34780 * 120.00047 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99765 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00245 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47593 * 181.34023 * 12 10 9 14 14 C 1.46905 * 111.00546 * 162.31762 * 13 12 10 15 15 C 1.52995 * 109.47292 * 190.00115 * 14 13 12 16 16 N 1.46494 * 109.47156 * 180.02562 * 15 14 13 17 17 C 1.34781 * 120.00197 * 180.02562 * 16 15 14 18 18 O 1.21552 * 119.99740 * 359.97438 * 17 16 15 19 19 C 1.47869 * 119.99955 * 179.97438 * 17 16 15 20 20 N 1.34552 * 126.04601 * 179.97438 * 19 17 16 21 21 C 1.30873 * 107.26713 * 180.02562 * 20 19 17 22 22 N 1.34581 * 107.62400 * 0.02562 * 21 20 19 23 23 H 0.97004 * 125.74622 * 180.02562 * 22 21 20 24 24 N 1.28847 * 108.50704 * 359.72684 * 22 21 20 25 25 C 1.46903 * 110.99939 * 286.27519 * 13 12 10 26 26 C 1.52992 * 117.49794 * 3.74523 * 25 13 12 27 27 C 1.52998 * 117.49794 * 295.11961 * 25 13 12 28 28 H 0.97004 * 120.00450 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00654 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47318 * 61.34104 * 12 10 9 31 31 H 1.09008 * 109.47451 * 301.34417 * 12 10 9 32 32 H 1.08998 * 109.46506 * 70.00156 * 14 13 12 33 33 H 1.08996 * 109.46903 * 310.00194 * 14 13 12 34 34 H 1.09005 * 109.47053 * 300.00067 * 15 14 13 35 35 H 1.09005 * 109.47119 * 59.99877 * 15 14 13 36 36 H 0.96997 * 120.00239 * 359.97438 * 16 15 14 37 37 H 1.08003 * 126.18535 * 179.97438 * 21 20 19 38 38 H 1.09002 * 115.55330 * 149.45423 * 25 13 12 39 39 H 1.08998 * 117.50105 * 359.97438 * 26 25 13 40 40 H 1.09000 * 117.49878 * 145.02525 * 26 25 13 41 41 H 1.08996 * 117.49946 * 214.98179 * 27 25 13 42 42 H 1.08999 * 117.49772 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7002 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4472 -3.4209 0.0011 12 6 5.5606 -2.3705 0.0011 13 7 6.0504 -3.7551 -0.0313 14 6 7.4578 -3.8062 -0.4492 15 6 7.8595 -5.2589 -0.7119 16 7 9.2631 -5.3099 -1.1280 17 6 9.8383 -6.4945 -1.4152 18 8 9.1925 -7.5205 -1.3286 19 6 11.2550 -6.5458 -1.8358 20 7 11.9481 -7.6556 -2.1496 21 6 13.1607 -7.2795 -2.4671 22 7 13.2160 -5.9400 -2.3489 23 1 13.9944 -5.3875 -2.5219 24 7 12.0593 -5.5145 -1.9734 25 6 5.8635 -4.4102 1.2702 26 6 5.1437 -3.6176 2.3631 27 6 6.6519 -3.8571 2.4591 28 1 -0.4851 0.8400 -0.0004 29 1 3.8649 -0.3633 0.0007 30 1 5.9240 -1.8777 0.9028 31 1 5.9241 -1.8360 -0.8767 32 1 8.0861 -3.3924 0.3395 33 1 7.5875 -3.2228 -1.3607 34 1 7.7297 -5.8423 0.1998 35 1 7.2310 -5.6727 -1.5006 36 1 9.7785 -4.4911 -1.1975 37 1 13.9708 -7.9271 -2.7687 38 1 5.6952 -5.4865 1.2350 39 1 4.8092 -2.6099 2.1166 40 1 4.5016 -4.1724 3.0471 41 1 7.0018 -4.5694 3.2061 42 1 7.3095 -3.0074 2.2754 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493426709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:25 Heat of formation + Delta-G solvation = 42.025804 kcal Electronic energy + Delta-G solvation = -26317.370707 eV Core-core repulsion = 22335.143808 eV Total energy + Delta-G solvation = -3982.226899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.46161 -41.13651 -40.51762 -39.04900 -36.40703 -35.87884 -34.44927 -34.42980 -33.68146 -32.64723 -30.71465 -28.18127 -26.12672 -25.44190 -24.14517 -23.66013 -23.04100 -21.68822 -21.43703 -20.87180 -19.90686 -19.75895 -18.48469 -18.07396 -17.60029 -17.43729 -17.27574 -16.71030 -16.35306 -15.99442 -15.76557 -15.42954 -15.18405 -15.13981 -14.85887 -14.61872 -14.40550 -13.91657 -13.56754 -13.26154 -13.19541 -13.05108 -12.72844 -12.38200 -12.27751 -12.12864 -11.95737 -11.78620 -11.68523 -11.58952 -11.45990 -11.41716 -11.05135 -10.78781 -10.35166 -10.20794 -10.18081 -9.17497 -8.36712 -5.96721 0.24544 1.16220 1.31056 1.37798 1.45806 1.55581 1.97547 2.04459 2.23537 2.26028 2.64505 2.89988 3.15677 3.19541 3.28695 3.56789 3.73289 3.94872 3.97874 4.02730 4.09575 4.14773 4.22391 4.37347 4.45398 4.54568 4.74039 4.86368 4.90081 4.96527 4.98343 5.16399 5.17427 5.24837 5.26268 5.57080 5.89254 5.94665 6.03037 6.11243 6.32565 6.65333 6.94768 6.95274 7.08717 7.46483 8.06180 8.81278 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024334 B = 0.002221 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.390570 B =12603.306597 C =13017.257505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.020 4.020 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.230 1.230 7 C -0.320 4.320 8 H 0.053 0.947 9 N -0.598 5.598 10 C 0.457 3.543 11 O -0.598 6.598 12 C 0.049 3.951 13 N -0.505 5.505 14 C 0.055 3.945 15 C 0.132 3.868 16 N -0.692 5.692 17 C 0.608 3.392 18 O -0.558 6.558 19 C 0.123 3.877 20 N -0.518 5.518 21 C 0.220 3.780 22 N -0.377 5.377 23 H 0.474 0.526 24 N -0.271 5.271 25 C 0.027 3.973 26 C -0.196 4.196 27 C -0.182 4.182 28 H 0.277 0.723 29 H 0.388 0.612 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.420 0.580 37 H 0.283 0.717 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.445 -2.870 -2.415 36.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.218 4.218 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.153 1.153 7 C -0.449 4.449 8 H 0.071 0.929 9 N -0.241 5.241 10 C 0.245 3.755 11 O -0.480 6.480 12 C -0.082 4.082 13 N -0.228 5.228 14 C -0.072 4.072 15 C 0.008 3.992 16 N -0.345 5.345 17 C 0.391 3.609 18 O -0.433 6.433 19 C -0.156 4.156 20 N -0.244 5.244 21 C -0.077 4.077 22 N -0.103 5.103 23 H 0.326 0.674 24 N -0.115 5.115 25 C -0.082 4.082 26 C -0.234 4.234 27 C -0.221 4.221 28 H 0.086 0.914 29 H 0.223 0.777 30 H 0.102 0.898 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.258 0.742 37 H 0.298 0.702 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.129 0.871 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 34.614 -4.248 -2.559 34.967 hybrid contribution 0.493 1.609 0.380 1.726 sum 35.107 -2.638 -2.179 35.273 Atomic orbital electron populations 1.69816 1.08171 1.29038 1.50993 1.26117 0.96467 1.02740 0.96460 0.85363 0.79495 0.76763 0.79860 1.18211 1.20339 1.15289 1.18949 0.81541 0.94711 1.49743 0.92883 1.42025 1.05678 1.07520 1.68836 1.20769 0.90678 0.83310 0.80776 1.90571 1.71062 1.32642 1.53743 1.21924 0.90870 0.90680 1.04722 1.61253 1.18741 1.15607 1.27235 1.22256 0.87073 0.95448 1.02424 1.21151 0.79855 0.97771 1.00378 1.45422 1.12962 1.08462 1.67658 1.16597 0.83245 0.83898 0.77173 1.90832 1.63694 1.35252 1.53530 1.23474 0.96748 0.86556 1.08851 1.71261 1.04907 1.29686 1.18522 1.27660 0.97004 0.84709 0.98348 1.45174 1.10310 1.08929 1.45881 0.67427 1.74143 0.94004 1.25883 1.17425 1.22617 1.04292 0.97949 0.83370 1.23171 0.96110 1.01518 1.02569 1.23516 0.92854 1.04298 1.01449 0.91352 0.77687 0.89791 0.85681 0.91100 0.87887 0.91672 0.92179 0.74190 0.70161 0.87098 0.89936 0.89764 0.87072 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 13.96 21.66 0.30 -57.00 16 2 C -0.02 -1.12 5.50 84.93 0.47 -0.65 16 3 Si 0.97 38.80 27.74 68.60 1.90 40.70 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 7 C -0.32 -18.79 10.16 84.04 0.85 -17.94 16 8 H 0.05 3.74 7.39 -2.91 -0.02 3.71 16 9 N -0.60 -27.88 5.09 -306.99 -1.56 -29.44 16 10 C 0.46 20.31 5.84 87.65 0.51 20.82 16 11 O -0.60 -33.05 14.79 -3.07 -0.05 -33.09 16 12 C 0.05 1.43 5.00 85.56 0.43 1.86 16 13 N -0.51 -14.49 4.34 -875.55 -3.80 -18.29 16 14 C 0.06 1.04 4.96 86.30 0.43 1.47 16 15 C 0.13 2.98 5.67 86.38 0.49 3.47 16 16 N -0.69 -13.41 5.55 -465.95 -2.59 -15.99 16 17 C 0.61 15.92 7.83 86.79 0.68 16.60 16 18 O -0.56 -19.85 17.09 -3.88 -0.07 -19.91 16 19 C 0.12 2.63 7.96 137.13 1.09 3.72 16 20 N -0.52 -10.48 11.41 -193.03 -2.20 -12.68 16 21 C 0.22 1.40 13.14 180.30 2.37 3.76 16 22 N -0.38 -1.65 6.93 -60.38 -0.42 -2.06 16 23 H 0.47 -2.60 8.96 -219.79 -1.97 -4.57 16 24 N -0.27 -3.66 11.98 -52.44 -0.63 -4.29 16 25 C 0.03 0.78 4.55 44.91 0.20 0.99 16 26 C -0.20 -6.21 8.48 30.59 0.26 -5.95 16 27 C -0.18 -4.02 9.26 30.59 0.28 -3.73 16 28 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.39 14.87 5.76 -92.71 -0.53 14.33 16 30 H 0.08 2.05 5.99 -2.39 -0.01 2.03 16 31 H 0.13 2.83 7.77 -2.38 -0.02 2.81 16 32 H 0.07 1.00 6.87 -2.39 -0.02 0.98 16 33 H 0.10 1.56 7.84 -2.39 -0.02 1.55 16 34 H 0.06 1.63 7.30 -2.38 -0.02 1.61 16 35 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.42 5.53 8.17 -92.71 -0.76 4.77 16 37 H 0.28 -1.69 8.06 -2.91 -0.02 -1.72 16 38 H 0.11 3.49 8.03 -2.39 -0.02 3.47 16 39 H 0.08 2.91 4.92 -2.39 -0.01 2.90 16 40 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 42 H 0.11 1.96 7.15 -2.39 -0.02 1.94 16 Total: -1.00 -95.92 354.92 -3.25 -99.17 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -2.21 Total: 28.48 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 8.07 Total: 24.42 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -10.90 Total: -139.76 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -0.11 Total: -53.01 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.90 Total: 40.70 kcal Total: -95.92 -3.25 -99.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493426709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.193 kcal (2) G-P(sol) polarization free energy of solvation -95.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds