Wall clock time and date at job start Fri Apr 10 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30833 * 125.90004 * 2 1 4 4 N 1.40078 * 108.20554 * 180.25765 * 3 2 1 5 5 H 0.97000 * 126.04168 * 179.70074 * 4 3 2 6 6 C 1.34949 * 107.92807 * 359.71754 * 4 3 2 7 7 C 1.50700 * 126.13395 * 179.97438 * 6 4 3 8 8 C 1.35323 * 107.74230 * 0.02562 * 6 4 3 9 9 C 1.50703 * 126.03701 * 180.02562 * 8 6 4 10 10 C 1.50703 * 109.47013 * 90.00126 * 9 8 6 11 11 O 1.21274 * 120.00152 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99611 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99693 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46964 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.70667 * 59.85548 * 14 13 12 16 16 C 1.53711 * 109.74653 * 180.62171 * 14 13 12 17 17 O 1.42960 * 109.14905 * 172.16512 * 16 14 13 18 18 C 1.42956 * 114.16835 * 297.29390 * 17 16 14 19 19 C 1.53287 * 109.22427 * 62.57896 * 18 17 16 20 20 N 1.47151 * 109.68604 * 299.31806 * 14 13 12 21 21 C 1.36937 * 120.98060 * 9.76488 * 20 14 13 22 22 H 1.08009 * 120.00023 * 328.61637 * 21 20 14 23 23 C 1.38809 * 120.00314 * 148.61950 * 21 20 14 24 24 N 1.31623 * 119.99854 * 349.29840 * 23 21 20 25 25 Si 1.86801 * 120.00307 * 169.01668 * 23 21 20 26 26 H 1.48500 * 109.47000 * 90.00098 * 25 23 21 27 27 H 1.48494 * 109.47466 * 210.00605 * 25 23 21 28 28 H 1.48505 * 109.47016 * 330.00241 * 25 23 21 29 29 H 1.09000 * 109.47579 * 270.20990 * 1 2 3 30 30 H 1.08995 * 109.47249 * 30.21010 * 1 2 3 31 31 H 1.09008 * 109.47271 * 150.21233 * 1 2 3 32 32 H 1.09000 * 109.46853 * 270.03090 * 7 6 4 33 33 H 1.09005 * 109.46988 * 30.02013 * 7 6 4 34 34 H 1.08996 * 109.47398 * 150.02584 * 7 6 4 35 35 H 1.08993 * 109.47284 * 329.99667 * 9 8 6 36 36 H 1.09007 * 109.46842 * 209.99773 * 9 8 6 37 37 H 0.96995 * 120.00267 * 359.97438 * 12 10 9 38 38 H 1.09005 * 109.47232 * 60.00323 * 13 12 10 39 39 H 1.08997 * 109.47124 * 299.99748 * 13 12 10 40 40 H 1.08999 * 109.65779 * 52.20367 * 16 14 13 41 41 H 1.08997 * 109.48643 * 292.03024 * 16 14 13 42 42 H 1.08997 * 109.51041 * 302.65188 * 18 17 16 43 43 H 1.09005 * 109.55632 * 182.52690 * 18 17 16 44 44 H 1.09000 * 109.68320 * 187.97625 * 19 18 17 45 45 H 1.09001 * 109.71624 * 67.44129 * 19 18 17 46 46 H 0.97001 * 120.00031 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3907 1.2078 -0.0114 6 6 3.6142 -0.7154 -0.0032 7 6 4.8349 -1.5991 -0.0082 8 6 2.3270 -1.1331 0.0037 9 6 1.8598 -2.5658 0.0094 10 6 1.7105 -3.0399 1.4321 11 8 1.9595 -2.2885 2.3509 12 7 1.3004 -4.2989 1.6833 13 6 1.1558 -4.7599 3.0663 14 6 0.6801 -6.2140 3.0721 15 1 1.4066 -6.8404 2.5544 16 6 0.5113 -6.6995 4.5207 17 8 -0.1043 -7.9897 4.5142 18 6 -1.4216 -8.0069 3.9591 19 6 -1.3544 -7.5866 2.4865 20 7 -0.6257 -6.3111 2.4007 21 6 -1.1447 -5.2477 1.7116 22 1 -0.9248 -4.2391 2.0292 23 6 -1.9536 -5.4659 0.6048 24 7 -2.0530 -6.6732 0.0901 25 14 -2.9072 -4.0477 -0.1494 26 1 -2.0786 -3.3942 -1.1942 27 1 -4.1590 -4.5622 -0.7603 28 1 -3.2420 -3.0591 0.9069 29 1 -0.3634 0.0038 1.0276 30 1 -0.3633 0.8880 -0.5171 31 1 -0.3634 -0.8919 -0.5106 32 1 5.1238 -1.8138 -1.0371 33 1 5.6539 -1.0903 0.5003 34 1 4.6102 -2.5322 0.5084 35 1 2.5909 -3.1884 -0.5063 36 1 0.8986 -2.6366 -0.4999 37 1 1.1009 -4.8997 0.9484 38 1 0.4252 -4.1370 3.5825 39 1 2.1172 -4.6897 3.5751 40 1 -0.1169 -5.9992 5.0712 41 1 1.4888 -6.7649 4.9985 42 1 -2.0568 -7.3113 4.5076 43 1 -1.8353 -9.0127 4.0322 44 1 -2.3635 -7.4600 2.0945 45 1 -0.8297 -8.3487 1.9103 46 1 -2.6179 -6.8257 -0.6835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673071535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:51 Heat of formation + Delta-G solvation = -9.439308 kcal Electronic energy + Delta-G solvation = -28583.680148 eV Core-core repulsion = 24702.761897 eV Total energy + Delta-G solvation = -3880.918251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.36342 -40.62921 -39.71900 -36.87884 -35.19210 -34.40495 -33.93570 -33.13223 -32.08087 -30.18916 -28.96651 -28.59807 -27.50461 -26.13202 -25.17849 -23.32632 -21.57705 -21.34423 -21.06401 -20.18239 -18.70778 -18.23966 -17.65288 -17.52709 -17.11646 -16.32563 -16.24075 -16.09229 -15.96673 -15.59768 -15.34525 -14.89155 -14.81948 -14.49125 -14.31768 -14.16679 -14.07680 -13.95126 -13.52501 -13.25609 -13.18682 -13.08081 -12.86060 -12.81731 -12.63815 -12.52200 -12.41296 -12.11192 -11.96410 -11.80980 -11.48291 -11.26482 -10.87126 -10.56121 -10.49957 -10.18026 -9.72871 -9.31134 -8.56006 -7.80852 -5.31905 0.90250 1.46725 1.53307 1.58776 1.64090 1.89458 1.99017 2.49716 2.64168 3.07225 3.36020 3.49821 3.69288 3.75958 4.09469 4.11843 4.15583 4.24882 4.29632 4.35944 4.46677 4.51135 4.57776 4.63745 4.66018 4.67951 4.70711 4.74470 4.78700 4.81967 4.94335 5.04413 5.06937 5.10075 5.16277 5.24724 5.35496 5.64782 5.68917 5.72415 5.77400 6.33067 6.42895 6.46769 6.73529 6.86389 7.16846 7.51349 7.82544 8.38985 9.23566 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.004328 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.817603 B = 6467.644377 C = 7822.739304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.077 3.923 3 N -0.330 5.330 4 N -0.470 5.470 5 H 0.449 0.551 6 C 0.107 3.893 7 C -0.090 4.090 8 C -0.238 4.238 9 C -0.056 4.056 10 C 0.511 3.489 11 O -0.588 6.588 12 N -0.698 5.698 13 C 0.145 3.855 14 C 0.127 3.873 15 H 0.040 0.960 16 C 0.057 3.943 17 O -0.398 6.398 18 C 0.045 3.955 19 C 0.150 3.850 20 N -0.605 5.605 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.031 4.031 24 N -0.927 5.927 25 Si 0.938 3.062 26 H -0.269 1.269 27 H -0.301 1.301 28 H -0.282 1.282 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.412 0.588 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.116 0.884 42 H 0.041 0.959 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.007 0.993 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 5.573 -0.451 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 N -0.155 5.155 4 N -0.180 5.180 5 H 0.296 0.704 6 C -0.023 4.023 7 C -0.149 4.149 8 C -0.250 4.250 9 C -0.097 4.097 10 C 0.298 3.702 11 O -0.469 6.469 12 N -0.349 5.349 13 C 0.020 3.980 14 C 0.021 3.979 15 H 0.057 0.943 16 C -0.022 4.022 17 O -0.316 6.316 18 C -0.032 4.032 19 C 0.024 3.976 20 N -0.331 5.331 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.227 4.227 24 N -0.573 5.573 25 Si 0.767 3.233 26 H -0.194 1.194 27 H -0.227 1.227 28 H -0.208 1.208 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.115 0.885 37 H 0.249 0.751 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.134 0.866 42 H 0.060 0.940 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.025 0.975 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.632 7.156 0.137 13.657 hybrid contribution -0.966 -0.017 -0.934 1.344 sum 10.665 7.139 -0.797 12.859 Atomic orbital electron populations 1.20236 0.86621 1.03875 1.02919 1.22416 0.97482 0.90757 0.98242 1.77136 0.87694 1.22765 1.27866 1.46047 1.06959 1.05098 1.59879 0.70408 1.21307 0.97461 0.85163 0.98325 1.20599 0.91653 0.97708 1.04906 1.19285 0.92212 0.94895 1.18562 1.19884 1.04324 0.92429 0.93076 1.20983 0.76018 0.81155 0.92031 1.90615 1.52922 1.55499 1.47863 1.46047 1.66066 1.13580 1.09240 1.21022 0.99686 0.93555 0.83725 1.21625 0.88126 0.94277 0.93913 0.94288 1.23070 0.98753 0.84773 0.95605 1.87798 1.30895 1.30468 1.82483 1.23216 0.83531 1.01678 0.94805 1.21224 0.97503 0.86636 0.92219 1.44308 1.16613 1.11309 1.60872 1.19267 1.25860 0.87227 1.04624 0.91340 1.25601 1.02398 0.97674 0.97064 1.70099 1.41837 1.21281 1.24098 0.85726 0.78595 0.80134 0.78871 1.19424 1.22736 1.20796 0.91254 0.89627 0.90273 0.87651 0.89091 0.90112 0.85985 0.88451 0.75123 0.93808 0.90549 0.93544 0.86572 0.94026 0.87852 0.91646 0.97455 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.27 10.26 71.24 0.73 -1.54 16 2 C 0.08 2.46 7.22 43.10 0.31 2.77 16 3 N -0.33 -10.34 12.70 -47.39 -0.60 -10.95 16 4 N -0.47 -11.38 7.36 -48.00 -0.35 -11.73 16 5 H 0.45 7.35 8.96 -213.34 -1.91 5.43 16 6 C 0.11 2.61 7.21 41.41 0.30 2.91 16 7 C -0.09 -1.40 10.04 71.24 0.71 -0.68 16 8 C -0.24 -7.08 4.59 -20.14 -0.09 -7.17 16 9 C -0.06 -1.61 5.61 29.10 0.16 -1.45 16 10 C 0.51 17.73 7.82 87.66 0.69 18.42 16 11 O -0.59 -24.22 16.03 -3.01 -0.05 -24.27 16 12 N -0.70 -24.44 3.78 -463.06 -1.75 -26.19 16 13 C 0.14 5.06 4.46 86.38 0.38 5.45 16 14 C 0.13 4.67 3.23 45.11 0.15 4.81 16 15 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 16 C 0.06 1.84 6.31 72.22 0.46 2.30 16 17 O -0.40 -14.41 10.74 -148.98 -1.60 -16.01 16 18 C 0.05 1.67 6.98 72.08 0.50 2.17 16 19 C 0.15 6.69 5.37 86.35 0.46 7.15 16 20 N -0.61 -26.95 3.03 -672.97 -2.04 -28.98 16 21 C -0.24 -11.47 7.06 84.03 0.59 -10.88 16 22 H 0.07 3.35 5.82 -2.91 -0.02 3.33 16 23 C -0.03 -1.54 5.06 84.86 0.43 -1.11 16 24 N -0.93 -49.31 11.13 21.65 0.24 -49.07 16 25 Si 0.94 41.19 29.57 68.60 2.03 43.21 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 27 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 2.24 7.25 -2.38 -0.02 2.22 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.08 1.40 7.77 -2.39 -0.02 1.38 16 35 H 0.12 2.70 7.77 -2.39 -0.02 2.68 16 36 H 0.10 2.85 7.25 -2.38 -0.02 2.83 16 37 H 0.41 15.03 7.32 -92.71 -0.68 14.35 16 38 H 0.04 1.72 7.56 -2.38 -0.02 1.71 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 44 H 0.07 3.27 6.32 -2.39 -0.02 3.26 16 45 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 46 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 Total: -1.00 -66.79 370.76 0.09 -66.70 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -1.58 Total: 34.14 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 5.79 Total: 23.14 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -4.50 Total: -126.92 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.65 Total: -40.28 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -66.79 0.09 -66.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673071535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.262 kcal (2) G-P(sol) polarization free energy of solvation -66.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds